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3BIM
Asym. Unit
Info
Asym.Unit (191 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (50 KB)
Biol.Unit 4 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BCL6 BTB DOMAIN DIMER IN COMPLEX WITH THE BCOR BBD COREPRESSOR PEPTIDE
Authors
:
G. G. Prive, A. F. Ghetu
Date
:
30 Nov 07 (Deposition) - 08 Jan 08 (Release) - 19 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: C,D,K,L (1x)
Biol. Unit 2: G,H,O,P (1x)
Biol. Unit 3: A,B,I,J (1x)
Biol. Unit 4: E,F,M,N (1x)
Keywords
:
Protein-Peptide Compex, Activator, Chromosomal Rearrangement, Dna-Binding, Metal-Binding, Nucleus, Phosphoprotein, Polymorphism, Proto-Oncogene, Repressor, Transcription, Transcription Regulation, Zinc, Zinc-Finger, Alternative Splicing, Ank Repeat, Chromatin Regulator, Disease Mutation, Transcription Repressor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. F. Ghetu, C. M. Corcoran, L. Cerchietti, V. J. Bardwell, A. Melnick, G. G. Prive
Structure Of A Bcor Corepressor Peptide In Complex With The Bcl6 Btb Domain Dimer.
Mol. Cell V. 29 384 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: BTB (A:32-99,B:32-99,C:32-99,D:32-99,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BTB
PS50097
BTB domain profile.
BCL6_HUMAN
32-99
8
A:32-99
B:32-99
C:32-99
D:32-99
E:32-99
F:32-99
G:32-99
H:32-99
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Exons
(4, 30)
Info
All Exons
Exon 1.5 (A:5-54 | B:5-54 | C:5-54 | D:5-54 ...)
Exon 1.6c (A:54-128 | B:54-128 | C:54-128 | D...)
Exon 1.7 (A:128-129 | B:128-128 | C:128-129 ...)
Exon 2.6a (I:498-514 | J:498-514 | K:498-514 ...)
View:
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All Exon Boundaries
1: Boundary 1.4b/1.5
2: Boundary 1.5/1.6c
3: Boundary 1.6c/1.7
4: Boundary 1.7/1.8
5: Boundary 2.5/2.6a
6: Boundary 2.6a/2.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000232014
3c
ENSE00001512051
chr3:
187454357-187453878
480
BCL6_HUMAN
-
0
0
-
-
1.4b
ENST00000232014
4b
ENSE00001377234
chr3:
187452695-187452657
39
BCL6_HUMAN
-
0
0
-
-
1.5
ENST00000232014
5
ENSE00002178368
chr3:
187451491-187451321
171
BCL6_HUMAN
1-54
54
8
A:5-54
B:5-54
C:5-54
D:5-54
E:6-54
F:5-54
G:7-54
H:6-54
50
50
50
50
49
50
48
49
1.6c
ENST00000232014
6c
ENSE00000781579
chr3:
187449718-187449497
222
BCL6_HUMAN
54-128
75
8
A:54-128
B:54-128
C:54-128
D:54-128
E:54-128
F:54-126
G:54-128
H:54-127
75
75
75
75
75
73
75
74
1.7
ENST00000232014
7
ENSE00001609887
chr3:
187447809-187446838
972
BCL6_HUMAN
128-452
325
6
A:128-129
B:128-128
C:128-129
D:128-128
E:128-128
-
G:128-128
-
2
1
2
1
1
-
1
-
1.8
ENST00000232014
8
ENSE00001591359
chr3:
187446332-187446148
185
BCL6_HUMAN
452-514
63
0
-
-
1.9
ENST00000232014
9
ENSE00001601736
chr3:
187444686-187444519
168
BCL6_HUMAN
514-570
57
0
-
-
1.10a
ENST00000232014
10a
ENSE00001721923
chr3:
187443417-187443287
131
BCL6_HUMAN
570-613
44
0
-
-
1.11a
ENST00000232014
11a
ENSE00001660239
chr3:
187442866-187442729
138
BCL6_HUMAN
614-659
46
0
-
-
1.12b
ENST00000232014
12b
ENSE00001928038
chr3:
187440389-187440186
204
BCL6_HUMAN
660-706
47
0
-
-
2.3b
ENST00000378444
3b
ENSE00001817959
X:39956656-39956468
189
BCOR_HUMAN
-
0
0
-
-
2.4
ENST00000378444
4
ENSE00002148237
X:39937222-39937097
126
BCOR_HUMAN
1-29
29
0
-
-
2.5
ENST00000378444
5
ENSE00001667630
X:39935785-39935707
79
BCOR_HUMAN
29-55
27
0
-
-
2.6a
ENST00000378444
6a
ENSE00001619092
X:39934433-39931602
2832
BCOR_HUMAN
56-999
944
8
I:498-514
J:498-514
K:498-514
L:499-514
M:498-514
N:499-514
O:498-514
P:498-514
17
17
17
16
17
16
17
17
2.7
ENST00000378444
7
ENSE00001778196
X:39930943-39930890
54
BCOR_HUMAN
1000-1017
18
0
-
-
2.8
ENST00000378444
8
ENSE00001645302
X:39930412-39930226
187
BCOR_HUMAN
1018-1080
63
0
-
-
2.10a
ENST00000378444
10a
ENSE00001800109
X:39923852-39923589
264
BCOR_HUMAN
1080-1168
89
0
-
-
2.11a
ENST00000378444
11a
ENSE00001477563
X:39923205-39922861
345
BCOR_HUMAN
1168-1283
116
0
-
-
2.12b
ENST00000378444
12b
ENSE00001317352
X:39922324-39921999
326
BCOR_HUMAN
1283-1391
109
0
-
-
2.13
ENST00000378444
13
ENSE00001296350
X:39921646-39921392
255
BCOR_HUMAN
1392-1476
85
0
-
-
2.14
ENST00000378444
14
ENSE00001308881
X:39916574-39916408
167
BCOR_HUMAN
1477-1532
56
0
-
-
2.15
ENST00000378444
15
ENSE00001290210
X:39914766-39914621
146
BCOR_HUMAN
1532-1581
50
0
-
-
2.16
ENST00000378444
16
ENSE00001311651
X:39913586-39913509
78
BCOR_HUMAN
1581-1607
27
0
-
-
2.17a
ENST00000378444
17a
ENSE00001290580
X:39913295-39913139
157
BCOR_HUMAN
1607-1659
53
0
-
-
2.18e
ENST00000378444
18e
ENSE00001711436
X:39911653-39910501
1153
BCOR_HUMAN
1659-1755
97
0
-
-
[
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3bima_ (A:)
1b: SCOP_d3bimb_ (B:)
1c: SCOP_d3bimc_ (C:)
1d: SCOP_d3bimd_ (D:)
1e: SCOP_d3bime_ (E:)
1f: SCOP_d3bimf_ (F:)
1g: SCOP_d3bimg_ (G:)
1h: SCOP_d3bimh_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
POZ domain
(79)
Superfamily
:
POZ domain
(79)
Family
:
BTB/POZ domain
(43)
Protein domain
:
B-cell lymphoma 6 (Bcl6) protein BTB domain
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3bima_
A:
1b
d3bimb_
B:
1c
d3bimc_
C:
1d
d3bimd_
D:
1e
d3bime_
E:
1f
d3bimf_
F:
1g
d3bimg_
G:
1h
d3bimh_
H:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3bimF00 (F:5-126)
1b: CATH_3bimE00 (E:6-128)
1c: CATH_3bimB00 (B:5-128)
1d: CATH_3bimD00 (D:5-128)
1e: CATH_3bimA00 (A:5-129)
1f: CATH_3bimC00 (C:5-129)
1g: CATH_3bimG00 (G:7-128)
1h: CATH_3bimH00 (H:6-127)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Potassium Channel Kv1.1; Chain A
(53)
Homologous Superfamily
:
Potassium Channel Kv1.1; Chain A
(53)
Human (Homo sapiens)
(30)
1a
3bimF00
F:5-126
1b
3bimE00
E:6-128
1c
3bimB00
B:5-128
1d
3bimD00
D:5-128
1e
3bimA00
A:5-129
1f
3bimC00
C:5-129
1g
3bimG00
G:7-128
1h
3bimH00
H:6-127
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Pfam Domains
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all PFAM domains
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