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Getting 'Exon' information from database.
3BH7
Asym. Unit
Info
Asym.Unit (87 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE RP2-ARL3 COMPLEX BOUND TO GDP-ALF4
Authors
:
S. Veltel, R. Gasper, A. Wittinghofer
Date
:
28 Nov 07 (Deposition) - 25 Mar 08 (Release) - 05 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Protein Complex, Gtpase Activating Protein And Gtpase, Retinitis Pigmentosa, Gtp-Binding, Lipoprotein, Myristate, Nucleotide-Binding, Disease Mutation, Membrane, Palmitate, Phosphoprotein, Sensory Transduction, Vision, Metal Binding Protein, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Veltel, R. Gasper, E. Eisenacher, A. Wittinghofer
The Retinitis Pigmentosa 2 Gene Product Is A Gtpase-Activating Protein For Arf-Like 3
Nat. Struct. Mol. Biol. V. 15 373 2008
[
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: TETRAFLUOROALUMINATE ION (ALFa)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALF
1
Ligand/Ion
TETRAFLUOROALUMINATE ION
2
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:31 , THR A:48 , HOH A:178 , HOH A:180
BINDING SITE FOR RESIDUE MG A 1
2
AC2
SOFTWARE
ASP A:26 , ASN A:27 , LYS A:30 , PRO A:47 , THR A:48 , GLY A:70 , GLN A:71 , HOH A:178 , HOH A:179 , HOH A:180 , ARG B:118
BINDING SITE FOR RESIDUE ALF A 3
3
AC3
SOFTWARE
ASN A:27 , ALA A:28 , GLY A:29 , LYS A:30 , THR A:31 , THR A:32 , ILE A:45 , ASN A:126 , LYS A:127 , ASP A:129 , LEU A:130 , SER A:159 , ALA A:160 , LEU A:161 , HOH A:178 , HOH A:180 , HOH A:185 , HOH A:193 , HOH A:224 , HOH A:242 , GLY B:98 , SER B:99 , GLN B:115 , GLN B:116 , ARG B:118 , HOH B:403
BINDING SITE FOR RESIDUE GDP A 2
[
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SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_018069 (C67Y, chain B, )
02: VAR_018070 (C86Y, chain B, )
03: VAR_018071 (P95L, chain B, )
04: VAR_008498 (C108G, chain B, )
05: VAR_068353 (C108Y, chain B, )
06: VAR_026058 (R118C, chain B, )
07: VAR_008499 (R118H, chain B, )
08: VAR_018072 (R118L, chain B, )
09: VAR_018074 (E138G, chain B, )
10: VAR_053961 (K144R, chain B, )
11: VAR_018075 (L188P, chain B, )
12: VAR_008500 (L253R, chain B, )
13: VAR_014535 (R282W, chain B, )
14: VAR_014536 (D338Y, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_018069
C
67
Y
XRP2_HUMAN
Disease (RP2)
---
B
C
67
Y
02
UniProt
VAR_018070
C
86
Y
XRP2_HUMAN
Disease (RP2)
---
B
C
86
Y
03
UniProt
VAR_018071
P
95
L
XRP2_HUMAN
Unclassified
---
B
P
95
L
04
UniProt
VAR_008498
C
108
G
XRP2_HUMAN
Disease (RP2)
---
B
C
108
G
05
UniProt
VAR_068353
C
108
Y
XRP2_HUMAN
Disease (RP2)
---
B
C
108
Y
06
UniProt
VAR_026058
R
118
C
XRP2_HUMAN
Disease (RP2)
---
B
R
118
C
07
UniProt
VAR_008499
R
118
H
XRP2_HUMAN
Disease (RP2)
---
B
R
118
H
08
UniProt
VAR_018072
R
118
L
XRP2_HUMAN
Disease (RP2)
28933687
B
R
118
L
09
UniProt
VAR_018074
E
138
G
XRP2_HUMAN
Disease (RP2)
---
B
E
138
G
10
UniProt
VAR_053961
K
144
R
XRP2_HUMAN
Polymorphism
3126141
B
K
144
R
11
UniProt
VAR_018075
L
188
P
XRP2_HUMAN
Disease (RP2)
---
B
L
188
P
12
UniProt
VAR_008500
L
253
R
XRP2_HUMAN
Disease (RP2)
---
B
L
253
R
13
UniProt
VAR_014535
R
282
W
XRP2_HUMAN
Polymorphism
1805147
B
R
282
W
14
UniProt
VAR_014536
D
338
Y
XRP2_HUMAN
Polymorphism
1805148
B
D
338
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.2 (B:37-256)
Exon 1.3 (B:257-295)
Exon 1.4 (B:295-323)
Exon 1.5 (B:324-350)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000218340
1
ENSE00000870084
X:46696375-46696637
263
XRP2_HUMAN
1-34
34
0
-
-
1.2
ENST00000218340
2
ENSE00000669241
X:46712911-46713576
666
XRP2_HUMAN
35-256
222
1
B:37-256
220
1.3
ENST00000218340
3
ENSE00000870085
X:46719423-46719537
115
XRP2_HUMAN
257-295
39
1
B:257-295
39
1.4
ENST00000218340
4
ENSE00001093035
X:46736940-46737025
86
XRP2_HUMAN
295-323
29
1
B:295-323
29
1.5
ENST00000218340
5
ENSE00001093037
X:46739121-46741793
2673
XRP2_HUMAN
324-350
27
1
B:324-350
27
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3bh7a_ (A:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
ADP-ribosylation factor
(40)
Mouse (Mus musculus) [TaxId: 10090]
(3)
1a
d3bh7a_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3bh7A00 (A:17-177)
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(
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(
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(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
House mouse (Mus musculus)
(47)
1a
3bh7A00
A:17-177
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Protein
Nucleic
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Chain B
Asymmetric Unit 1
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