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3BGV
Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (52 KB)
Biol.Unit 4 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MRNA CAP GUANINE-N7 METHYLTRANSFERASE IN COMPLEX WITH SAH
Authors
:
V. V. Lunin, H. Wu, H. Zeng, T. Antoshenko, F. Mackenzie, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, J. Min, A. N. Plotnikov, Structural Genomics Consortium (Sgc)
Date
:
27 Nov 07 (Deposition) - 04 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Methyltransferase, Alternative Splicing, Mrna Capping, Mrna Processing, Nucleus, Phosphoprotein, Rna-Binding, S- Adenosyl-L-Methionine, Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Wu, V. V. Lunin, H. Zeng, T. Antoshenko, F. Mackenzie, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, J. Min, A. N. Plotnikov
The Crystal Structure Of Human Rna (Guanine-7-) Methyltransferase In Complex With Sah.
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
1b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
1c: S-ADENOSYL-L-HOMOCYSTEINE (SAHc)
1d: S-ADENOSYL-L-HOMOCYSTEINE (SAHd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SAH
4
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:16 , GLY A:41 , GLY A:43 , ASP A:63 , ILE A:64 , ASP A:97 , SER A:98 , GLN A:120 , PHE A:121 , VAL A:122 , TYR A:125 , MET A:136 , HOH A:323 , HOH C:471
BINDING SITE FOR RESIDUE SAH C 313
2
AC2
SOFTWARE
LYS B:16 , GLY B:41 , CYS B:42 , GLY B:43 , ASP B:63 , ILE B:64 , ASP B:97 , SER B:98 , GLN B:120 , PHE B:121 , VAL B:122 , TYR B:125 , HOH B:325 , HOH B:327 , HOH B:330 , HOH C:494 , HOH C:544
BINDING SITE FOR RESIDUE SAH C 314
3
AC3
SOFTWARE
LYS C:16 , GLY C:41 , GLY C:43 , ASP C:63 , ILE C:64 , ASP C:97 , SER C:98 , GLN C:120 , PHE C:121 , VAL C:122 , TYR C:125 , MET C:136 , HOH C:434 , HOH C:439 , HOH C:450 , HOH C:477 , HOH C:519
BINDING SITE FOR RESIDUE SAH C 315
4
AC4
SOFTWARE
HOH C:487 , HOH C:506 , HOH C:526 , LYS D:16 , GLY D:41 , GLY D:43 , ASP D:63 , ILE D:64 , ALA D:96 , ASP D:97 , SER D:98 , GLN D:120 , PHE D:121 , VAL D:122 , TYR D:125 , MET D:136 , HOH D:324 , HOH D:327 , HOH D:341
BINDING SITE FOR RESIDUE SAH C 316
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(9, 36)
Info
All Exons
Exon 1.4 (A:4-21 | B:5-21 | C:5-21 | D:5-21)
Exon 1.5 (A:21-63 (gaps) | B:21-63 (gaps) | ...)
Exon 1.6 (A:63-100 (gaps) | B:63-100 | C:63-...)
Exon 1.7 (A:101-161 | B:101-161 | C:101-161 ...)
Exon 1.8 (A:161-216 (gaps) | B:161-216 (gaps...)
Exon 1.9 (A:216-252 | B:216-252 | C:216-252 ...)
Exon 1.10 (A:287-289 | B:286-289 | C:286-289 ...)
Exon 1.11 (A:290-301 | B:290-301 | C:290-301 ...)
Exon 1.12b (A:301-312 | B:301-312 | C:301-312 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.3b/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12b
10: Boundary 1.12b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000383314
1
ENSE00001313973
chr18:
13726660-13726728
69
MCES_HUMAN
-
0
0
-
-
1.2
ENST00000383314
2
ENSE00001540359
chr18:
13730626-13730754
129
MCES_HUMAN
-
0
0
-
-
1.3b
ENST00000383314
3b
ENSE00001120461
chr18:
13731475-13731933
459
MCES_HUMAN
1-139
139
0
-
-
1.4
ENST00000383314
4
ENSE00000666433
chr18:
13734463-13734598
136
MCES_HUMAN
140-185
46
4
A:4-21
B:5-21
C:5-21
D:5-21
18
17
17
17
1.5
ENST00000383314
5
ENSE00000666434
chr18:
13737009-13737134
126
MCES_HUMAN
185-227
43
4
A:21-63 (gaps)
B:21-63 (gaps)
C:21-63 (gaps)
D:21-63 (gaps)
43
43
43
43
1.6
ENST00000383314
6
ENSE00000666435
chr18:
13740166-13740278
113
MCES_HUMAN
227-264
38
4
A:63-100 (gaps)
B:63-100
C:63-100 (gaps)
D:63-100 (gaps)
38
38
38
38
1.7
ENST00000383314
7
ENSE00000666436
chr18:
13741509-13741690
182
MCES_HUMAN
265-325
61
4
A:101-161
B:101-161
C:101-161
D:101-161
61
61
61
61
1.8
ENST00000383314
8
ENSE00000666437
chr18:
13742487-13742651
165
MCES_HUMAN
325-380
56
4
A:161-216 (gaps)
B:161-216 (gaps)
C:161-216 (gaps)
D:161-216 (gaps)
56
56
56
56
1.9
ENST00000383314
9
ENSE00000666438
chr18:
13746219-13746336
118
MCES_HUMAN
380-419
40
4
A:216-252
B:216-252
C:216-252
D:216-252
37
37
37
37
1.10
ENST00000383314
10
ENSE00000883621
chr18:
13752325-13752426
102
MCES_HUMAN
420-453
34
4
A:287-289
B:286-289
C:286-289
D:286-289
3
4
4
4
1.11
ENST00000383314
11
ENSE00000883622
chr18:
13754113-13754146
34
MCES_HUMAN
454-465
12
4
A:290-301
B:290-301
C:290-301
D:290-301
12
12
12
12
1.12b
ENST00000383314
12b
ENSE00001496033
chr18:
13759941-13764557
4617
MCES_HUMAN
465-476
12
4
A:301-312
B:301-312
C:301-312
D:301-311
12
12
12
11
[
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SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3bgvD00 (D:5-311)
1b: CATH_3bgvA00 (A:4-312)
1c: CATH_3bgvC00 (C:5-312)
1d: CATH_3bgvB00 (B:5-312)
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Classes
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Human (Homo sapiens)
(49)
1a
3bgvD00
D:5-311
1b
3bgvA00
A:4-312
1c
3bgvC00
C:5-312
1d
3bgvB00
B:5-312
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (195 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (52 KB)
Header - Biol.Unit 3
Biol.Unit 4 (50 KB)
Header - Biol.Unit 4
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