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3B3R
Asym. Unit
Info
Asym.Unit (297 KB)
Biol.Unit 1 (292 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF STREPTOMYCES CHOLESTEROL OXIDASE H447Q/E361Q MUTANT BOUND TO GLYCEROL (0.98A)
Authors
:
A. Y. Lyubimov, K. Heard, H. Tang, N. S. Sampson, A. Vrielink
Date
:
22 Oct 07 (Deposition) - 18 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.98
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Flavoenzyme, Flavin, Cholesterol Oxidase, Covalently-Modified Flavin, Cholesterol Metabolism, Fad, Flavoprotein, Lipid Metabolism, Oxidoreductase, Secreted, Steroid Metabolism
(Keyword Search:
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Reference
:
A. Y. Lyubimov, K. Heard, H. Tang, N. S. Sampson, A. Vrielink
Distortion Of Flavin Geometry Is Linked To Ligand Binding I Cholesterol Oxidase
Protein Sci. V. 16 2647 2007
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: FLAVIN-N7 PROTONATED-ADENINE DINUC... (FAEa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
FAE
1
Ligand/Ion
FLAVIN-N7 PROTONATED-ADENINE DINUCLEOTIDE
2
GOL
3
Ligand/Ion
GLYCEROL
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:179 , GLN A:180 , ARG A:283 , HIS A:331 , TRP A:333 , ASN A:334 , HOH A:536
BINDING SITE FOR RESIDUE SO4 A 514
2
AC2
SOFTWARE
ARG A:254 , THR A:256 , LYS A:257 , ASP A:258 , HOH A:1010
BINDING SITE FOR RESIDUE SO4 A 515
3
AC3
SOFTWARE
ILE A:16 , GLY A:17 , GLY A:19 , TYR A:20 , GLY A:21 , LEU A:39 , GLU A:40 , MET A:41 , TYR A:107 , GLY A:109 , ARG A:110 , GLY A:111 , GLY A:114 , GLY A:115 , VAL A:118 , ASN A:119 , GLY A:120 , GLY A:121 , MET A:122 , ILE A:218 , HIS A:248 , GLN A:249 , VAL A:250 , GLY A:288 , ALA A:289 , GLY A:290 , TYR A:446 , ASP A:474 , GLY A:475 , ASN A:485 , PRO A:486 , PHE A:487 , GOL A:512 , HOH A:516 , HOH A:517 , HOH A:606 , HOH A:667 , HOH A:675 , HOH A:680 , HOH A:686 , HOH A:690 , HOH A:691 , HOH A:907 , HOH A:1135
BINDING SITE FOR RESIDUE FAE A 510
4
AC4
SOFTWARE
ALA A:363 , PRO A:364 , PRO A:366 , GOL A:512 , HOH A:601 , HOH A:671 , HOH A:841 , HOH A:1058
BINDING SITE FOR RESIDUE GOL A 511
5
AC5
SOFTWARE
GLY A:120 , MET A:122 , ILE A:218 , PRO A:344 , GLN A:361 , LEU A:377 , TYR A:446 , GLN A:447 , ASN A:485 , FAE A:510 , GOL A:511 , HOH A:573 , HOH A:841 , HOH A:907
BINDING SITE FOR RESIDUE GOL A 512
6
AC6
SOFTWARE
LEU A:237 , ILE A:244 , HOH A:570 , HOH A:703 , HOH A:1013 , HOH A:1128
BINDING SITE FOR RESIDUE GOL A 513
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GMC_OXRED_1 (A:109-132)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GMC_OXRED_1
PS00623
GMC oxidoreductases signature 1.
CHOD_STRS0
146-169
1
A:109-132
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3b3ra2 (A:319-450)
2a: SCOP_d3b3ra1 (A:9-318,A:451-506)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
GMC oxidoreductases
(30)
Protein domain
:
Cholesterol oxidase
(17)
Streptomyces sp. [TaxId: 1931]
(14)
1a
d3b3ra2
A:319-450
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Cholesterol oxidase of GMC family
(17)
Streptomyces sp. [TaxId: 1931]
(14)
2a
d3b3ra1
A:9-318,A:451-506
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3b3rA02 (A:156-213,A:323-384,A:406-442)
2a: CATH_3b3rA01 (A:4-155,A:218-322,A:385-401,A:443-505)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cholesterol Oxidase; domain 2
(20)
Homologous Superfamily
:
Cholesterol Oxidase; domain 2
(20)
Sa-coo (Streptomyces sp)
(9)
1a
3b3rA02
A:156-213,A:323-384,A:406-442
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Sa-coo (Streptomyces sp)
(9)
2a
3b3rA01
A:4-155,A:218-322,A:385-401,A:443-505
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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