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3ASO
Asym. Unit
Info
Asym.Unit (681 KB)
Biol.Unit 1 (336 KB)
Biol.Unit 2 (332 KB)
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(1)
Title
:
BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY OXIDIZED STATE MEASURED AT 0.9 ANGSTROM WAVELENGTH
Authors
:
M. Suga, N. Yano, K. Muramoto, K. Shinzawa-Itoh, T. Maeda, E. Yamashita T. Tsukihara, S. Yoshikawa
Date
:
17 Dec 10 (Deposition) - 03 Aug 11 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M (1x)
Biol. Unit 2: N,O,P,Q,R,S,T,U,V,W,X,Y,Z (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Suga, N. Yano, K. Muramoto, K. Shinzawa-Itoh, T. Maeda, E. Yamashita, T. Tsukihara, S. Yoshikawa
Distinguishing Between Cl- And O2(2-) As The Bridging Element Between Fe3+ And Cu2+ In Resting-Oxidized Cytochrom C Oxidase
Acta Crystallogr. , Sect. D V. 67 742 2011
[
close entry info
]
Hetero Components
(17, 60)
Info
All Hetero Components
01a: CARDIOLIPIN (CDLa)
01b: CARDIOLIPIN (CDLb)
01c: CARDIOLIPIN (CDLc)
01d: CARDIOLIPIN (CDLd)
02a: CHOLIC ACID (CHDa)
02b: CHOLIC ACID (CHDb)
02c: CHOLIC ACID (CHDc)
02d: CHOLIC ACID (CHDd)
02e: CHOLIC ACID (CHDe)
02f: CHOLIC ACID (CHDf)
02g: CHOLIC ACID (CHDg)
02h: CHOLIC ACID (CHDh)
04a: DINUCLEAR COPPER ION (CUAa)
04b: DINUCLEAR COPPER ION (CUAb)
03a: COPPER (II) ION (CUa)
04b: COPPER (II) ION (CUb)
05a: DECYL-BETA-D-MALTOPYRANOSIDE (DMUa)
05b: DECYL-BETA-D-MALTOPYRANOSIDE (DMUb)
06a: N-FORMYLMETHIONINE (FMEa)
06b: N-FORMYLMETHIONINE (FMEb)
06c: N-FORMYLMETHIONINE (FMEc)
06d: N-FORMYLMETHIONINE (FMEd)
07a: HEME-A (HEAa)
07b: HEME-A (HEAb)
07c: HEME-A (HEAc)
07d: HEME-A (HEAd)
08a: MAGNESIUM ION (MGa)
08b: MAGNESIUM ION (MGb)
09a: SODIUM ION (NAa)
09b: SODIUM ION (NAb)
10a: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKa)
10b: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKb)
10c: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKc)
10d: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKd)
10e: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKe)
10f: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKf)
11a: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVa)
11b: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVb)
11c: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVc)
11d: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVd)
11e: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVe)
11f: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVf)
11g: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVg)
11h: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVh)
12a: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCa)
12b: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCb)
13a: N-ACETYL-SERINE (SACa)
13b: N-ACETYL-SERINE (SACb)
14a: TRISTEAROYLGLYCEROL (TGLa)
14b: TRISTEAROYLGLYCEROL (TGLb)
14c: TRISTEAROYLGLYCEROL (TGLc)
14d: TRISTEAROYLGLYCEROL (TGLd)
14e: TRISTEAROYLGLYCEROL (TGLe)
14f: TRISTEAROYLGLYCEROL (TGLf)
15a: PHOSPHOTHREONINE (TPOa)
15b: PHOSPHOTHREONINE (TPOb)
16a: UNKNOWN ATOM OR ION (UNXa)
16b: UNKNOWN ATOM OR ION (UNXb)
17a: ZINC ION (ZNa)
17b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CDL
4
Ligand/Ion
CARDIOLIPIN
2
CHD
8
Ligand/Ion
CHOLIC ACID
3
CU
2
Ligand/Ion
COPPER (II) ION
4
CUA
2
Ligand/Ion
DINUCLEAR COPPER ION
5
DMU
2
Ligand/Ion
DECYL-BETA-D-MALTOPYRANOSIDE
6
FME
4
Mod. Amino Acid
N-FORMYLMETHIONINE
7
HEA
4
Ligand/Ion
HEME-A
8
MG
2
Ligand/Ion
MAGNESIUM ION
9
NA
2
Ligand/Ion
SODIUM ION
10
PEK
6
Ligand/Ion
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
11
PGV
8
Ligand/Ion
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
12
PSC
2
Ligand/Ion
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
13
SAC
2
Mod. Amino Acid
N-ACETYL-SERINE
14
TGL
6
Ligand/Ion
TRISTEAROYLGLYCEROL
15
TPO
2
Mod. Amino Acid
PHOSPHOTHREONINE
16
UNX
2
Ligand/Ion
UNKNOWN ATOM OR ION
17
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:24 , GLY A:27 , MET A:28 , THR A:31 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , VAL A:58 , HIS A:61 , ALA A:62 , MET A:65 , ILE A:66 , VAL A:70 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , SER A:382 , VAL A:386 , PHE A:393 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , HOH A:2045 , HOH A:2283 , HOH A:2378
BINDING SITE FOR RESIDUE HEA A 515
02
AC2
SOFTWARE
TRP A:126 , TRP A:236 , VAL A:243 , TYR A:244 , HIS A:290 , HIS A:291 , THR A:309 , ILE A:312 , THR A:316 , GLY A:317 , GLY A:352 , GLY A:355 , ILE A:356 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , VAL A:373 , HIS A:376 , PHE A:377 , VAL A:380 , LEU A:381 , ARG A:438 , HOH A:2081 , HOH A:2183 , HOH A:2272 , HOH A:2341 , ILE B:34 , ILE B:72 , LEU B:73
BINDING SITE FOR RESIDUE HEA A 516
03
AC3
SOFTWARE
HIS A:240 , HIS A:290 , HIS A:291
BINDING SITE FOR RESIDUE CU A 517
04
AC4
SOFTWARE
HIS A:368 , ASP A:369 , HOH A:2267 , GLU B:198 , HOH B:2266 , HOH B:2268
BINDING SITE FOR RESIDUE MG A 518
05
AC5
SOFTWARE
GLU A:40 , GLY A:45 , SER A:441 , HOH A:2258
BINDING SITE FOR RESIDUE NA A 519
06
AC6
SOFTWARE
VAL A:350 , ASN A:422 , HIS A:429 , PHE A:430 , LEU A:433 , HOH A:4504 , LEU B:7 , GLY B:8 , LEU B:28 , VAL B:31 , PHE B:32 , SER B:35 , LEU B:39 , HOH D:2606
BINDING SITE FOR RESIDUE TGL A 521
07
AC7
SOFTWARE
ASN A:406 , THR A:408 , TRP A:409 , HOH A:2126 , HOH A:4387 , HOH A:4576 , HOH A:4647 , HOH A:4726 , THR D:80 , PHE D:87 , HIS K:10 , ALA M:16 , LEU M:19 , SER M:20 , HOH M:4628
BINDING SITE FOR RESIDUE PGV A 524
08
AC8
SOFTWARE
PHE A:94 , PRO A:95 , ARG A:96 , MET A:97 , MET A:100 , HOH A:2085 , HOH A:2289 , HIS C:9 , ALA C:24 , ASN C:50 , MET C:54 , TRP C:57 , TRP C:58 , GLU C:64 , HIS C:71 , LEU C:79 , GLY C:82 , PEK G:264
BINDING SITE FOR RESIDUE PGV A 522
09
AC9
SOFTWARE
HIS B:161 , CYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , MET B:207
BINDING SITE FOR RESIDUE CUA B 228
10
BC1
SOFTWARE
PHE A:321 , ILE B:41 , HIS B:52 , MET B:56 , ASP B:57 , VAL B:61 , TRP B:65 , HIS E:5 , ASP E:8 , PHE E:11 , LEU E:41 , HOH E:2664 , ARG I:10 , ALA I:14
BINDING SITE FOR RESIDUE PSC B 229
11
BC2
SOFTWARE
MET A:271 , TRP A:275 , GLU B:62 , THR B:63 , HOH B:2605 , HOH B:3446 , HOH B:4731 , ARG T:14 , ARG T:17 , PHE T:21 , GLY T:22 , PEK T:1265
BINDING SITE FOR RESIDUE CHD B 1085
12
BC3
SOFTWARE
HIS A:233 , ASP A:300 , THR A:301 , TYR A:304 , TRP C:99 , HIS C:103 , PGV C:268 , HOH C:4482 , HOH C:4842 , CDL T:1269
BINDING SITE FOR RESIDUE CHD C 525
13
BC4
SOFTWARE
LYS C:157 , HIS C:158 , THR C:168 , TYR C:172 , ALA F:1 , ARG G:17 , PHE G:21 , GLY G:22 , CHD G:229 , CDL G:269 , TRP N:275 , SER N:279 , GLN O:59
BINDING SITE FOR RESIDUE PEK C 265
14
BC5
SOFTWARE
TRP C:58 , VAL C:61 , SER C:65 , THR C:66 , PHE C:86 , HIS C:207 , ILE C:210 , THR C:213 , PHE C:214 , ARG C:221 , HIS C:226 , PHE C:227 , HIS C:231 , HIS C:232 , PHE C:233 , GLY C:234 , CDL C:270 , HOH C:2253 , HOH C:2559 , HOH C:4413 , HOH F:2065
BINDING SITE FOR RESIDUE PGV C 267
15
BC6
SOFTWARE
PHE A:237 , TRP C:99 , TYR C:102 , HIS C:103 , CHD C:525 , ASN H:24 , HOH P:4823 , HOH T:4364
BINDING SITE FOR RESIDUE PGV C 268
16
BC7
SOFTWARE
MET C:51 , LEU C:52 , TYR C:55 , TRP C:58 , ARG C:59 , ILE C:62 , ARG C:63 , PHE C:67 , THR C:213 , VAL C:217 , LYS C:224 , HIS C:226 , PGV C:267 , HOH C:4262 , HOH C:4599
BINDING SITE FOR RESIDUE CDL C 270
17
BC8
SOFTWARE
ARG C:156 , LEU C:160 , PHE C:164 , LEU C:223 , PHE J:1
BINDING SITE FOR RESIDUE CHD C 271
18
BC9
SOFTWARE
TRP A:334 , GLY A:343 , LYS A:411 , PHE A:414 , ARG D:73 , TRP D:78 , VAL D:81 , HOH I:4610
BINDING SITE FOR RESIDUE TGL D 523
19
CC1
SOFTWARE
CYS F:60 , CYS F:62 , CYS F:82 , CYS F:85
BINDING SITE FOR RESIDUE ZN F 99
20
CC2
SOFTWARE
HIS A:151 , PGV A:522 , TYR C:181 , TYR C:182 , ALA C:184 , PHE C:186 , THR C:187 , ILE C:188 , PHE C:198 , GLY C:202 , TRP G:62 , THR G:68 , PHE G:69 , PHE G:70 , HIS G:71 , ASN G:76 , HOH G:2350
BINDING SITE FOR RESIDUE PEK G 264
21
CC3
SOFTWARE
LEU C:127 , LEU C:131 , PEK C:265 , SER G:27 , LEU G:30 , CYS G:31 , ASN G:34 , LEU G:37 , HIS G:38 , ARG G:42 , HOH G:4624 , HOH G:4794 , HOH G:4857 , PHE N:282 , ASP N:300 , TYR N:304 , SER N:307 , ILE N:311 , ALA O:77 , LEU O:78
BINDING SITE FOR RESIDUE CDL G 269
22
CC4
SOFTWARE
PEK C:265 , ARG G:14 , ARG G:17 , PHE G:21 , GLY G:22 , HOH G:2446 , HOH G:3605 , HOH G:4380 , HOH G:4790 , MET N:271 , GLU O:62 , THR O:63
BINDING SITE FOR RESIDUE CHD G 229
23
CC5
SOFTWARE
SER G:2 , ALA G:3 , LYS G:5 , GLY G:6 , HIS G:8 , LYS P:77 , ARG P:80 , ILE P:84 , PHE P:98 , TRP P:240 , VAL P:247
BINDING SITE FOR RESIDUE PEK G 1263
24
CC6
SOFTWARE
TYR J:32 , ARG J:33 , MET J:36 , THR J:37
BINDING SITE FOR RESIDUE CHD J 60
25
CC7
SOFTWARE
THR A:17 , LEU A:18 , LEU A:21 , TRP A:25 , PHE A:400 , ILE A:472 , ASN L:10 , ILE L:11 , PRO L:12 , PHE L:13 , SER L:14 , ARG L:20 , MET L:24 , PHE L:29 , HOH L:4868
BINDING SITE FOR RESIDUE TGL L 522
26
CC8
SOFTWARE
TRP D:98 , LEU M:27 , LEU M:28 , GLY M:31 , TRP M:32 , TYR M:35 , HIS M:36 , HOH M:4119
BINDING SITE FOR RESIDUE DMU M 526
27
CC9
SOFTWARE
GLY N:27 , MET N:28 , THR N:31 , SER N:34 , ILE N:37 , ARG N:38 , TYR N:54 , VAL N:58 , HIS N:61 , ALA N:62 , MET N:65 , ILE N:66 , VAL N:70 , GLY N:125 , TRP N:126 , TYR N:371 , PHE N:377 , HIS N:378 , SER N:382 , VAL N:386 , PHE N:393 , PHE N:425 , GLN N:428 , ARG N:438 , ARG N:439 , SER N:458 , MET N:468 , HOH N:3045 , HOH N:3283 , HOH N:3378
BINDING SITE FOR RESIDUE HEA N 515
28
DC1
SOFTWARE
TRP N:126 , TRP N:236 , VAL N:243 , TYR N:244 , HIS N:290 , HIS N:291 , THR N:309 , ILE N:312 , THR N:316 , GLY N:317 , GLY N:352 , GLY N:355 , ILE N:356 , LEU N:358 , ALA N:359 , ASP N:364 , HIS N:368 , VAL N:373 , HIS N:376 , PHE N:377 , VAL N:380 , LEU N:381 , ARG N:438 , HOH N:3081 , HOH N:3183 , HOH N:3272 , HOH N:3341
BINDING SITE FOR RESIDUE HEA N 516
29
DC2
SOFTWARE
HIS N:240 , HIS N:290 , HIS N:291
BINDING SITE FOR RESIDUE CU N 517
30
DC3
SOFTWARE
HIS N:368 , ASP N:369 , GLU O:198 , HOH O:3266 , HOH O:3267 , HOH O:3268
BINDING SITE FOR RESIDUE MG N 518
31
DC4
SOFTWARE
GLU N:40 , GLY N:45 , SER N:441 , HOH N:3258
BINDING SITE FOR RESIDUE NA N 519
32
DC5
SOFTWARE
VAL N:350 , TYR N:379 , ASN N:422 , PHE N:426 , HIS N:429 , PHE N:430 , LEU N:433 , HOH N:4573 , LEU O:7 , GLY O:8 , LEU O:28 , VAL O:31 , PHE O:32 , SER O:35 , SER O:36 , LEU O:39 , HOH V:3606
BINDING SITE FOR RESIDUE TGL N 1521
33
DC6
SOFTWARE
THR N:17 , LEU N:18 , LEU N:20 , LEU N:21 , PHE N:22 , TRP N:25 , TRP N:81 , PHE N:400 , ILE N:472 , HOH N:4751 , ILE Y:11 , PRO Y:12 , PHE Y:13 , SER Y:14 , ARG Y:20 , MET Y:24 , MET Y:25 , PHE Y:28 , PHE Y:29 , HOH Y:4526
BINDING SITE FOR RESIDUE TGL N 1522
34
DC7
SOFTWARE
ASN N:406 , THR N:408 , TRP N:409 , ILE N:412 , HOH N:4490 , PHE Q:87 , HIS X:10 , PRO Z:12 , GLN Z:15 , LEU Z:19
BINDING SITE FOR RESIDUE PGV N 1524
35
DC8
SOFTWARE
PHE N:94 , PRO N:95 , ARG N:96 , MET N:97 , MET N:100 , HOH N:3085 , HOH N:3289 , HIS P:9 , ALA P:24 , THR P:28 , ASN P:50 , MET P:54 , TRP P:57 , TRP P:58 , GLU P:64 , HIS P:71 , LEU P:79 , GLY P:82 , SER P:89 , PHE P:93
BINDING SITE FOR RESIDUE PGV N 1266
36
DC9
SOFTWARE
HIS O:161 , CYS O:196 , GLU O:198 , CYS O:200 , HIS O:204 , MET O:207
BINDING SITE FOR RESIDUE CUA O 228
37
EC1
SOFTWARE
PHE N:321 , ILE O:41 , HIS O:52 , MET O:56 , ASP O:57 , TRP O:65 , HOH O:3664 , HIS R:5 , ASP R:8 , PHE R:11 , LEU R:41 , ARG V:10 , ALA V:14
BINDING SITE FOR RESIDUE PSC O 1229
38
EC2
SOFTWARE
HIS N:233 , ASP N:300 , THR N:301 , TYR N:304 , TRP P:99 , HIS P:103 , PGV P:1268 , HOH P:4400
BINDING SITE FOR RESIDUE CHD P 1525
39
EC3
SOFTWARE
TRP P:58 , VAL P:61 , SER P:65 , THR P:66 , HIS P:71 , HIS P:207 , ILE P:210 , PHE P:214 , ARG P:221 , HIS P:226 , PHE P:227 , THR P:228 , HIS P:231 , HIS P:232 , PHE P:233 , GLY P:234 , CDL P:1270 , HOH P:3253 , HOH S:3065
BINDING SITE FOR RESIDUE PGV P 1267
40
EC4
SOFTWARE
HOH G:4541 , HOH G:4789 , TRP P:99 , HIS P:103 , CHD P:1525 , HOH P:4240 , HOH P:4397 , ASN U:24
BINDING SITE FOR RESIDUE PGV P 1268
41
EC5
SOFTWARE
MET P:51 , TYR P:55 , ARG P:59 , ARG P:63 , PHE P:67 , THR P:213 , PHE P:220 , LYS P:224 , HIS P:226 , PGV P:1267 , HOH P:3144 , HOH P:4461 , LYS W:8 , THR W:27
BINDING SITE FOR RESIDUE CDL P 1270
42
EC6
SOFTWARE
ARG P:156 , LEU P:160 , PHE P:164 , LEU P:223 , PHE W:1
BINDING SITE FOR RESIDUE CHD P 1271
43
EC7
SOFTWARE
TRP N:334 , GLY N:343 , PHE N:414 , ILE O:42 , LYS O:49 , ARG Q:73 , SER Q:74 , GLU Q:77 , TRP Q:78 , VAL Q:81 , HOH V:4391
BINDING SITE FOR RESIDUE TGL Q 1523
44
EC8
SOFTWARE
CYS S:60 , CYS S:62 , CYS S:82 , CYS S:85
BINDING SITE FOR RESIDUE ZN S 99
45
EC9
SOFTWARE
LYS C:77 , ARG C:80 , TYR C:81 , ILE C:84 , LEU C:85 , VAL C:91 , PHE C:98 , TRP C:240 , VAL C:247 , SER T:2 , ALA T:3 , LYS T:5 , GLY T:6 , HIS T:8
BINDING SITE FOR RESIDUE PEK T 263
46
FC1
SOFTWARE
HIS N:151 , LEU N:215 , HOH N:4772 , TRP P:34 , TYR P:181 , TYR P:182 , ALA P:184 , PHE P:186 , THR P:187 , ILE P:188 , PHE P:198 , TRP T:62 , THR T:68 , PHE T:69 , PHE T:70 , HIS T:71 , ASN T:76
BINDING SITE FOR RESIDUE PEK T 1264
47
FC2
SOFTWARE
SER A:279 , GLN B:59 , CHD B:1085 , LYS P:157 , HIS P:158 , THR P:168 , TYR P:172 , HOH P:4892 , ALA S:1 , ARG T:17 , GLY T:22 , CDL T:1269
BINDING SITE FOR RESIDUE PEK T 1265
48
FC3
SOFTWARE
ASP A:300 , SER A:307 , ILE A:311 , ILE B:74 , ALA B:77 , LEU B:78 , LEU B:81 , CHD C:525 , LEU P:127 , TYR P:253 , SER T:27 , LEU T:30 , CYS T:31 , ASN T:34 , LEU T:37 , HIS T:38 , ARG T:42 , PEK T:1265 , HOH T:4502 , HOH T:4708
BINDING SITE FOR RESIDUE CDL T 1269
49
FC4
SOFTWARE
TYR W:32 , ARG W:33 , MET W:36 , THR W:37
BINDING SITE FOR RESIDUE CHD W 1059
50
FC5
SOFTWARE
TRP Q:98 , LEU Z:27 , LEU Z:28 , GLY Z:31 , TRP Z:32 , TYR Z:35 , HIS Z:36 , HOH Z:4251
BINDING SITE FOR RESIDUE DMU Z 1526
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(10, 20)
Info
All PROSITE Patterns/Profiles
01: COX2_TM (B:1-91,O:1-91)
02: COX1 (A:1-514,N:1-514)
03: COX3 (C:4-261,P:4-261)
04: CHCH (H:26-72,U:26-72)
05: COX5B_2 (F:1-98,S:1-98)
06: COX6A (G:55-72,T:55-72)
07: COX2_CUA (B:92-225,O:92-225)
08: COX5B_1 (F:69-91,S:69-91)
09: COX2 (B:159-207,O:159-207)
10: COX1_CUB (A:236-291,N:236-291)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COX2_TM
PS50999
Cytochrome oxidase subunit II transmembrane region profile.
COX2_BOVIN
1-91
2
B:1-91
O:1-91
2
COX1
PS50855
Cytochrome oxidase subunit I profile.
COX1_BOVIN
1-514
2
A:1-514
N:1-514
3
COX3
PS50253
Heme-copper oxidase subunit III family profile.
COX3_BOVIN
4-261
2
C:4-261
P:4-261
4
CHCH
PS51808
Coiled coil-helix-coiled coil-helix (CHCH) domain profile.
CX6B1_BOVIN
27-73
2
H:26-72
U:26-72
5
COX5B_2
PS51359
Cytochrome c oxidase subunit Vb, zinc binding domain profile.
COX5B_BOVIN
32-129
2
F:1-98
S:1-98
6
COX6A
PS01329
Cytochrome c oxidase subunit VIa signature.
CX6A2_BOVIN
67-84
2
G:55-72
T:55-72
7
COX2_CUA
PS50857
Cytochrome oxidase subunit II copper A binding domain profile.
COX2_BOVIN
92-225
2
B:92-225
O:92-225
8
COX5B_1
PS00848
Cytochrome c oxidase subunit Vb, zinc binding region signature.
COX5B_BOVIN
100-122
2
F:69-91
S:69-91
9
COX2
PS00078
CO II and nitrous oxide reductase dinuclear copper centers signature.
COX2_BOVIN
159-207
2
B:159-207
O:159-207
10
COX1_CUB
PS00077
Heme-copper oxidase catalytic subunit, copper B binding region signature.
COX1_BOVIN
236-291
2
A:236-291
N:236-291
[
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Exons
(11, 22)
Info
All Exons
Exon 1.2 (I:1-36 | V:1-36)
Exon 1.3 (I:37-73 | V:37-73)
Exon 2.2 (J:1-13 | W:1-13)
Exon 2.3 (J:14-42 | W:14-42)
Exon 2.4 (J:42-58 | W:42-58)
Exon 3.2 (E:5-32 | R:5-32)
Exon 3.3 (E:32-72 | R:32-72)
Exon 3.4 (E:73-109 | R:73-109)
Exon 4.1 (G:1-13 | T:1-13)
Exon 4.2 (G:13-58 | T:13-58)
Exon 4.3 (G:59-84 | T:59-84)
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 2.1/2.2
05: Boundary 2.2/2.3
06: Boundary 2.3/2.4
07: Boundary 2.4/-
08: Boundary 3.1/3.2
09: Boundary 3.2/3.3
10: Boundary 3.3/3.4
11: Boundary 3.4/3.5
12: Boundary -/4.1
13: Boundary 4.1/4.2
14: Boundary 4.2/4.3
15: Boundary 4.3/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000018778
1
ENSBTAE00000392730
chr14:
62538824-62538908
85
COX6C_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000018778
2
ENSBTAE00000152930
chr14:
62539837-62539968
132
COX6C_BOVIN
1-37
37
2
I:1-36
V:1-36
36
36
1.3
ENSBTAT00000018778
3
ENSBTAE00000152932
chr14:
62540912-62541039
128
COX6C_BOVIN
38-74
37
2
I:37-73
V:37-73
37
37
1.4
ENSBTAT00000018778
4
ENSBTAE00000382779
chr14:
62548625-62548744
120
COX6C_BOVIN
-
0
0
-
-
2.1
ENSBTAT00000019808
1
ENSBTAE00000161251
chr18:
46232862-46232802
61
CX7A1_BOVIN
1-5
5
0
-
-
2.2
ENSBTAT00000019808
2
ENSBTAE00000161252
chr18:
46232104-46232018
87
CX7A1_BOVIN
6-34
29
2
J:1-13
W:1-13
13
13
2.3
ENSBTAT00000019808
3
ENSBTAE00000161253
chr18:
46231883-46231799
85
CX7A1_BOVIN
35-63
29
2
J:14-42
W:14-42
29
29
2.4
ENSBTAT00000019808
4
ENSBTAE00000161254
chr18:
46231418-46231281
138
CX7A1_BOVIN
63-80
18
2
J:42-58
W:42-58
17
17
3.1
ENSBTAT00000022949
1
ENSBTAE00000344359
chr21:
33835267-33835426
160
COX5A_BOVIN
1-36
36
0
-
-
3.2
ENSBTAT00000022949
2
ENSBTAE00000187373
chr21:
33840320-33840436
117
COX5A_BOVIN
36-75
40
2
E:5-32
R:5-32
28
28
3.3
ENSBTAT00000022949
3
ENSBTAE00000187374
chr21:
33842603-33842724
122
COX5A_BOVIN
75-115
41
2
E:32-72
R:32-72
41
41
3.4
ENSBTAT00000022949
4
ENSBTAE00000187376
chr21:
33843979-33844143
165
COX5A_BOVIN
116-152
37
2
E:73-109
R:73-109
37
37
3.5
ENSBTAT00000022949
5
ENSBTAE00000187379
chr21:
33846054-33846214
161
COX5A_BOVIN
-
0
0
-
-
4.1
ENSBTAT00000026002
1
ENSBTAE00000425992
chr25:
29305227-29305113
115
CX6A2_BOVIN
1-25
25
2
G:1-13
T:1-13
13
13
4.2
ENSBTAT00000026002
2
ENSBTAE00000211646
chr25:
29304966-29304830
137
CX6A2_BOVIN
25-70
46
2
G:13-58
T:13-58
46
46
4.3
ENSBTAT00000026002
3
ENSBTAE00000211652
chr25:
29304732-29304604
129
CX6A2_BOVIN
71-97
27
2
G:59-84
T:59-84
26
26
[
close EXON info
]
SCOP Domains
(19, 28)
Info
All SCOP Domains
01a: SCOP_d3asoe_ (E:)
01b: SCOP_d3asor_ (R:)
02a: SCOP_d3asou_ (U:)
03a: SCOP_d3asoh_ (H:)
04a: SCOP_d3asob2 (B:91-227)
04b: SCOP_d3asoo2 (O:91-227)
05a: SCOP_d3ason_ (N:)
06a: SCOP_d3asoa_ (A:)
07a: SCOP_d3asoc_ (C:)
07b: SCOP_d3asop_ (P:)
08a: SCOP_d3asoq_ (Q:)
09a: SCOP_d3asod_ (D:)
10a: SCOP_d3asog_ (G:)
10b: SCOP_d3asot_ (T:)
11a: SCOP_d3asoi_ (I:)
11b: SCOP_d3asov_ (V:)
12a: SCOP_d3asoj_ (J:)
12b: SCOP_d3asow_ (W:)
13a: SCOP_d3asox_ (X:)
14a: SCOP_d3asok_ (K:)
15a: SCOP_d3asol_ (L:)
15b: SCOP_d3asoy_ (Y:)
16a: SCOP_d3asoz_ (Z:)
17a: SCOP_d3asom_ (M:)
18a: SCOP_d3asob1 (B:1-90)
18b: SCOP_d3asoo1 (O:1-90)
19a: SCOP_d3asof_ (F:)
19b: SCOP_d3asos_ (S:)
View:
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Classes
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(
)
Folds
(
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(
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Cytochrome c oxidase subunit E
(25)
Family
:
Cytochrome c oxidase subunit E
(25)
Protein domain
:
Cytochrome c oxidase subunit E
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
01a
d3asoe_
E:
01b
d3asor_
R:
Fold
:
Cytochrome c oxidase subunit h
(26)
Superfamily
:
Cytochrome c oxidase subunit h
(26)
Family
:
Cytochrome c oxidase subunit h
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
02a
d3asou_
U:
Protein domain
:
Cytochrome c oxidase subunit h
(8)
Cow (Bos taurus) [TaxId: 9913]
(8)
03a
d3asoh_
H:
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Periplasmic domain of cytochrome c oxidase subunit II
(70)
Protein domain
:
Cytochrome c oxidase
(62)
Cow (Bos taurus) [TaxId: 9913]
(24)
04a
d3asob2
B:91-227
04b
d3asoo2
O:91-227
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Cytochrome c oxidase subunit I-like
(65)
Superfamily
:
Cytochrome c oxidase subunit I-like
(65)
Family
:
Cytochrome c oxidase subunit I-like
(65)
Protein domain
:
automated matches
(24)
Cow (Bos taurus) [TaxId: 9913]
(18)
05a
d3ason_
N:
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit I
(8)
Cow (Bos taurus) [TaxId: 9913]
(8)
06a
d3asoa_
A:
Fold
:
Cytochrome c oxidase subunit III-like
(29)
Superfamily
:
Cytochrome c oxidase subunit III-like
(29)
Family
:
Cytochrome c oxidase subunit III-like
(29)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit III
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
07a
d3asoc_
C:
07b
d3asop_
P:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
08a
d3asoq_
Q:
Protein domain
:
Mitochondrial cytochrome c oxidase subunit IV
(8)
Cow (Bos taurus) [TaxId: 9913]
(8)
09a
d3asod_
D:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
10a
d3asog_
G:
10b
d3asot_
T:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
11a
d3asoi_
I:
11b
d3asov_
V:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
12a
d3asoj_
J:
12b
d3asow_
W:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
13a
d3asox_
X:
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIb
(8)
Cow (Bos taurus) [TaxId: 9913]
(8)
14a
d3asok_
K:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
15a
d3asol_
L:
15b
d3asoy_
Y:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
16a
d3asoz_
Z:
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(8)
Cow (Bos taurus) [TaxId: 9913]
(8)
17a
d3asom_
M:
Fold
:
Transmembrane helix hairpin
(84)
Superfamily
:
Cytochrome c oxidase subunit II-like, transmembrane region
(66)
Family
:
Cytochrome c oxidase subunit II-like, transmembrane region
(57)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit II
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
18a
d3asob1
B:1-90
18b
d3asoo1
O:1-90
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Rubredoxin-like
(127)
Family
:
Cytochrome c oxidase Subunit F
(25)
Protein domain
:
Cytochrome c oxidase Subunit F
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
19a
d3asof_
F:
19b
d3asos_
S:
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Asym.Unit (681 KB)
Header - Asym.Unit
Biol.Unit 1 (336 KB)
Header - Biol.Unit 1
Biol.Unit 2 (332 KB)
Header - Biol.Unit 2
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