PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3ASN
Biol. Unit 1
Info
Asym.Unit (679 KB)
Biol.Unit 1 (335 KB)
Biol.Unit 2 (332 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY OXIDIZED STATE MEASURED AT 1.7470 ANGSTROM WAVELENGTH
Authors
:
M. Suga, N. Yano, K. Muramoto, K. Shinzawa-Itoh, T. Maeda, E. Yamashita T. Tsukihara, S. Yoshikawa
Date
:
17 Dec 10 (Deposition) - 03 Aug 11 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M (1x)
Biol. Unit 2: N,O,P,Q,R,S,T,U,V,W,X,Y,Z (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Suga, N. Yano, K. Muramoto, K. Shinzawa-Itoh, T. Maeda, E. Yamashita, T. Tsukihara, S. Yoshikawa
Distinguishing Between Cl- And O2(2-) As The Bridging Element Between Fe3+ And Cu2+ In Resting-Oxidized Cytochrom C Oxidase
Acta Crystallogr. , Sect. D V. 67 742 2011
[
close entry info
]
Hetero Components
(13, 27)
Info
All Hetero Components
01a: CARDIOLIPIN (CDLa)
01b: CARDIOLIPIN (CDLb)
01c: CARDIOLIPIN (CDLc)
01d: CARDIOLIPIN (CDLd)
02a: CHOLIC ACID (CHDa)
02b: CHOLIC ACID (CHDb)
02c: CHOLIC ACID (CHDc)
02d: CHOLIC ACID (CHDd)
02e: CHOLIC ACID (CHDe)
02f: CHOLIC ACID (CHDf)
02g: CHOLIC ACID (CHDg)
02h: CHOLIC ACID (CHDh)
04a: DINUCLEAR COPPER ION (CUAa)
04b: DINUCLEAR COPPER ION (CUAb)
03a: COPPER (II) ION (CUa)
04b: COPPER (II) ION (CUb)
05a: DECYL-BETA-D-MALTOPYRANOSIDE (DMUa)
05b: DECYL-BETA-D-MALTOPYRANOSIDE (DMUb)
06a: N-FORMYLMETHIONINE (FMEa)
06b: N-FORMYLMETHIONINE (FMEb)
06c: N-FORMYLMETHIONINE (FMEc)
06d: N-FORMYLMETHIONINE (FMEd)
07a: HEME-A (HEAa)
07b: HEME-A (HEAb)
07c: HEME-A (HEAc)
07d: HEME-A (HEAd)
08a: MAGNESIUM ION (MGa)
08b: MAGNESIUM ION (MGb)
09a: SODIUM ION (NAa)
09b: SODIUM ION (NAb)
10a: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKa)
10b: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKb)
10c: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKc)
10d: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKd)
10e: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKe)
10f: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKf)
11a: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVa)
11b: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVb)
11c: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVc)
11d: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVd)
11e: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVe)
11f: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVf)
11g: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVg)
11h: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVh)
12a: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCa)
12b: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCb)
13a: N-ACETYL-SERINE (SACa)
13b: N-ACETYL-SERINE (SACb)
14a: TRISTEAROYLGLYCEROL (TGLa)
14b: TRISTEAROYLGLYCEROL (TGLb)
14c: TRISTEAROYLGLYCEROL (TGLc)
14d: TRISTEAROYLGLYCEROL (TGLd)
14e: TRISTEAROYLGLYCEROL (TGLe)
14f: TRISTEAROYLGLYCEROL (TGLf)
15a: PHOSPHOTHREONINE (TPOa)
15b: PHOSPHOTHREONINE (TPOb)
16a: UNKNOWN ATOM OR ION (UNXa)
16b: UNKNOWN ATOM OR ION (UNXb)
17a: ZINC ION (ZNa)
17b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CDL
2
Ligand/Ion
CARDIOLIPIN
2
CHD
5
Ligand/Ion
CHOLIC ACID
3
CU
-1
Ligand/Ion
COPPER (II) ION
4
CUA
1
Ligand/Ion
DINUCLEAR COPPER ION
5
DMU
1
Ligand/Ion
DECYL-BETA-D-MALTOPYRANOSIDE
6
FME
2
Mod. Amino Acid
N-FORMYLMETHIONINE
7
HEA
2
Ligand/Ion
HEME-A
8
MG
-1
Ligand/Ion
MAGNESIUM ION
9
NA
-1
Ligand/Ion
SODIUM ION
10
PEK
3
Ligand/Ion
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
11
PGV
4
Ligand/Ion
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
12
PSC
1
Ligand/Ion
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
13
SAC
1
Mod. Amino Acid
N-ACETYL-SERINE
14
TGL
3
Ligand/Ion
TRISTEAROYLGLYCEROL
15
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
16
UNX
1
Ligand/Ion
UNKNOWN ATOM OR ION
17
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: EC5 (SOFTWARE)
28: EC7 (SOFTWARE)
29: FC2 (SOFTWARE)
30: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:24 , GLY A:27 , MET A:28 , THR A:31 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , VAL A:58 , HIS A:61 , ALA A:62 , MET A:65 , ILE A:66 , VAL A:70 , ILE A:73 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , SER A:382 , VAL A:386 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , MET A:468 , HOH A:2045 , HOH A:2283 , HOH A:2378
BINDING SITE FOR RESIDUE HEA A 515
02
AC2
SOFTWARE
TRP A:126 , TRP A:236 , VAL A:243 , TYR A:244 , HIS A:290 , HIS A:291 , THR A:309 , ILE A:312 , THR A:316 , GLY A:317 , GLY A:352 , GLY A:355 , ILE A:356 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , VAL A:373 , HIS A:376 , PHE A:377 , VAL A:380 , LEU A:381 , ARG A:438 , HOH A:2081 , HOH A:2183 , HOH A:2272 , HOH A:2341 , ILE B:34 , ILE B:72
BINDING SITE FOR RESIDUE HEA A 516
03
AC3
SOFTWARE
HIS A:240 , HIS A:290 , HIS A:291
BINDING SITE FOR RESIDUE CU A 517
04
AC4
SOFTWARE
HIS A:368 , ASP A:369 , HOH A:2267 , GLU B:198 , HOH B:2266 , HOH B:2268
BINDING SITE FOR RESIDUE MG A 518
05
AC5
SOFTWARE
GLU A:40 , GLY A:45 , SER A:441 , HOH A:2258
BINDING SITE FOR RESIDUE NA A 519
06
AC6
SOFTWARE
VAL A:350 , TYR A:379 , ASN A:422 , HIS A:429 , PHE A:430 , LEU A:433 , HOH A:4504 , LEU B:7 , LEU B:28 , VAL B:31 , PHE B:32 , SER B:35 , SER B:36 , LEU B:39
BINDING SITE FOR RESIDUE TGL A 521
07
AC7
SOFTWARE
ASN A:406 , THR A:408 , TRP A:409 , HOH A:2126 , HOH A:4387 , HOH A:4576 , HOH A:4647 , HOH A:4726 , PHE D:87 , HIS K:10 , GLN M:15 , ALA M:16 , LEU M:19 , SER M:20 , HOH M:4628
BINDING SITE FOR RESIDUE PGV A 524
08
AC8
SOFTWARE
PHE A:94 , PRO A:95 , ARG A:96 , MET A:97 , MET A:100 , HOH A:2085 , HOH A:2289 , HIS C:9 , ASN C:50 , TRP C:57 , TRP C:58 , GLU C:64 , HIS C:71 , LEU C:79 , GLY C:82 , GLU C:90 , PEK C:264
BINDING SITE FOR RESIDUE PGV A 522
09
AC9
SOFTWARE
HIS B:161 , CYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , MET B:207
BINDING SITE FOR RESIDUE CUA B 228
10
BC1
SOFTWARE
PHE A:321 , ILE B:41 , HIS B:52 , MET B:56 , ASP B:57 , VAL B:61 , HIS E:5 , ASP E:8 , PHE E:11 , LEU E:41 , HOH E:2664 , ARG I:10
BINDING SITE FOR RESIDUE PSC B 229
11
BC2
SOFTWARE
MET A:271 , GLN B:59 , GLU B:62 , THR B:63 , HOH B:2605 , HOH B:3446 , HOH B:4731 , PEK P:1265 , ARG T:14 , ARG T:17 , PHE T:21 , GLY T:22
BINDING SITE FOR RESIDUE CHD B 1085
12
BC3
SOFTWARE
HIS A:233 , ASP A:300 , THR A:301 , TYR A:304 , TRP C:99 , HIS C:103 , HOH C:4482 , HOH C:4842 , CDL T:1269
BINDING SITE FOR RESIDUE CHD C 525
13
BC4
SOFTWARE
HIS A:151 , PGV A:522 , TRP C:34 , TYR C:181 , TYR C:182 , ALA C:184 , PHE C:186 , THR C:187 , ILE C:188 , PHE C:198 , TRP G:62 , THR G:68 , PHE G:69 , PHE G:70 , HIS G:71 , ASN G:76 , HOH G:2350
BINDING SITE FOR RESIDUE PEK C 264
14
BC5
SOFTWARE
LYS C:157 , HIS C:158 , TYR C:172 , ALA F:1 , LYS G:5 , ARG G:17 , PHE G:21 , GLY G:22 , CHD G:229 , CDL G:269 , SER N:279 , GLN O:59
BINDING SITE FOR RESIDUE PEK C 265
15
BC6
SOFTWARE
MET C:54 , TRP C:58 , VAL C:61 , SER C:65 , THR C:66 , PHE C:86 , HIS C:207 , ILE C:210 , THR C:213 , PHE C:214 , ARG C:221 , HIS C:226 , PHE C:227 , THR C:228 , HIS C:231 , HIS C:232 , PHE C:233 , GLY C:234 , CDL C:270 , HOH C:2065 , HOH C:2253 , HOH C:2559 , HOH C:4413
BINDING SITE FOR RESIDUE PGV C 267
16
BC7
SOFTWARE
PHE A:237 , TRP C:99 , TYR C:102 , HIS C:103 , ASN H:24 , HOH P:4823 , ALA T:1 , HOH T:4364
BINDING SITE FOR RESIDUE PGV C 268
17
BC8
SOFTWARE
MET C:51 , LEU C:52 , MET C:54 , TYR C:55 , TRP C:58 , ARG C:59 , ILE C:62 , ARG C:63 , PHE C:67 , THR C:213 , VAL C:217 , LYS C:224 , HIS C:226 , PGV C:267 , HOH C:4262 , HOH C:4599
BINDING SITE FOR RESIDUE CDL C 270
18
BC9
SOFTWARE
ARG C:156 , LEU C:160 , PHE C:164 , LEU C:223 , PHE J:1
BINDING SITE FOR RESIDUE CHD C 271
19
CC1
SOFTWARE
TRP A:334 , GLY A:343 , LYS A:411 , PHE A:414 , HOH B:2562 , ARG D:73 , TRP D:78 , VAL D:81 , HOH I:4610
BINDING SITE FOR RESIDUE TGL D 523
20
CC2
SOFTWARE
CYS F:60 , CYS F:62 , CYS F:82 , CYS F:85
BINDING SITE FOR RESIDUE ZN F 99
21
CC3
SOFTWARE
LEU C:127 , LEU C:131 , PEK C:265 , SER G:27 , LEU G:30 , CYS G:31 , ASN G:34 , LEU G:37 , HIS G:38 , ARG G:42 , HOH G:4624 , PHE N:282 , ASP N:300 , TYR N:304 , SER N:307 , ILE N:311 , ALA O:77 , LEU O:78
BINDING SITE FOR RESIDUE CDL G 269
22
CC4
SOFTWARE
PEK C:265 , ARG G:14 , ARG G:17 , PHE G:21 , GLY G:22 , HOH G:2446 , HOH G:3605 , HOH G:4380 , HOH G:4790 , MET N:271 , GLU O:62 , THR O:63
BINDING SITE FOR RESIDUE CHD G 229
23
CC5
SOFTWARE
SER G:2 , ALA G:3 , LYS G:5 , GLY G:6 , HIS G:8 , HOH G:4909 , LYS P:77 , ARG P:80 , ILE P:84 , PHE P:98 , TRP P:240 , VAL P:247
BINDING SITE FOR RESIDUE PEK G 1263
24
CC6
SOFTWARE
TYR J:32 , ARG J:33 , MET J:36 , THR J:37
BINDING SITE FOR RESIDUE CHD J 60
25
CC7
SOFTWARE
THR A:17 , LEU A:18 , LEU A:21 , TRP A:25 , TRP A:81 , PHE A:400 , ILE A:472 , ILE L:11 , PRO L:12 , PHE L:13 , SER L:14 , ARG L:20 , MET L:24 , PHE L:29
BINDING SITE FOR RESIDUE TGL L 522
26
CC8
SOFTWARE
TRP D:98 , TYR D:102 , LEU M:27 , LEU M:28 , GLY M:31 , TRP M:32 , TYR M:35 , HIS M:36 , HOH M:4119
BINDING SITE FOR RESIDUE DMU M 526
27
EC5
SOFTWARE
TRP A:275 , GLN B:59 , CHD B:1085 , LYS P:157 , HIS P:158 , ALA S:1 , ARG T:17 , GLY T:22 , CDL T:1269 , HOH T:4067
BINDING SITE FOR RESIDUE PEK P 1265
28
EC7
SOFTWARE
ALA G:1 , HOH G:4541 , HOH G:4789 , TRP P:99 , HIS P:103 , ALA P:107 , CHD P:1525 , HOH P:4240 , HOH P:4397 , ASN U:24
BINDING SITE FOR RESIDUE PGV P 1268
29
FC2
SOFTWARE
LYS C:77 , ARG C:80 , TYR C:81 , ILE C:84 , PHE C:98 , TRP C:240 , VAL C:247 , SER T:2 , ALA T:3 , LYS T:5 , GLY T:6 , HIS T:8
BINDING SITE FOR RESIDUE PEK T 263
30
FC3
SOFTWARE
PHE A:282 , ASP A:300 , SER A:307 , ILE A:311 , ALA B:77 , LEU B:78 , LEU B:81 , CHD C:525 , LEU P:127 , LEU P:250 , PEK P:1265 , SER T:27 , LEU T:30 , CYS T:31 , ASN T:34 , LEU T:37 , HIS T:38 , ARG T:42 , HOH T:4502 , HOH T:4708
BINDING SITE FOR RESIDUE CDL T 1269
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(10, 10)
Info
All PROSITE Patterns/Profiles
01: COX2_TM (B:1-91)
02: COX1 (A:1-514)
03: COX3 (C:4-261)
04: CHCH (H:26-72)
05: COX5B_2 (F:1-98)
06: COX6A (G:55-72)
07: COX2_CUA (B:92-225)
08: COX5B_1 (F:69-91)
09: COX2 (B:159-207)
10: COX1_CUB (A:236-291)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COX2_TM
PS50999
Cytochrome oxidase subunit II transmembrane region profile.
COX2_BOVIN
1-91
1
B:1-91
-
2
COX1
PS50855
Cytochrome oxidase subunit I profile.
COX1_BOVIN
1-514
1
A:1-514
-
3
COX3
PS50253
Heme-copper oxidase subunit III family profile.
COX3_BOVIN
4-261
1
C:4-261
-
4
CHCH
PS51808
Coiled coil-helix-coiled coil-helix (CHCH) domain profile.
CX6B1_BOVIN
27-73
1
H:26-72
-
5
COX5B_2
PS51359
Cytochrome c oxidase subunit Vb, zinc binding domain profile.
COX5B_BOVIN
32-129
1
F:1-98
-
6
COX6A
PS01329
Cytochrome c oxidase subunit VIa signature.
CX6A2_BOVIN
67-84
1
G:55-72
-
7
COX2_CUA
PS50857
Cytochrome oxidase subunit II copper A binding domain profile.
COX2_BOVIN
92-225
1
B:92-225
-
8
COX5B_1
PS00848
Cytochrome c oxidase subunit Vb, zinc binding region signature.
COX5B_BOVIN
100-122
1
F:69-91
-
9
COX2
PS00078
CO II and nitrous oxide reductase dinuclear copper centers signature.
COX2_BOVIN
159-207
1
B:159-207
-
10
COX1_CUB
PS00077
Heme-copper oxidase catalytic subunit, copper B binding region signature.
COX1_BOVIN
236-291
1
A:236-291
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(14, 28)
Info
All SCOP Domains
01a: SCOP_d3asne_ (E:)
01b: SCOP_d3asnr_ (R:)
02a: SCOP_d3asnh_ (H:)
02b: SCOP_d3asnu_ (U:)
03a: SCOP_d3asnb2 (B:91-227)
03b: SCOP_d3asno2 (O:91-227)
04a: SCOP_d3asna_ (A:)
04b: SCOP_d3asnn_ (N:)
05a: SCOP_d3asnc_ (C:)
05b: SCOP_d3asnp_ (P:)
06a: SCOP_d3asnd_ (D:)
06b: SCOP_d3asnq_ (Q:)
07a: SCOP_d3asng_ (G:)
07b: SCOP_d3asnt_ (T:)
08a: SCOP_d3asni_ (I:)
08b: SCOP_d3asnv_ (V:)
09a: SCOP_d3asnj_ (J:)
09b: SCOP_d3asnw_ (W:)
10a: SCOP_d3asnk_ (K:)
10b: SCOP_d3asnx_ (X:)
11a: SCOP_d3asnl_ (L:)
11b: SCOP_d3asny_ (Y:)
12a: SCOP_d3asnm_ (M:)
12b: SCOP_d3asnz_ (Z:)
13a: SCOP_d3asnb1 (B:1-90)
13b: SCOP_d3asno1 (O:1-90)
14a: SCOP_d3asnf_ (F:)
14b: SCOP_d3asns_ (S:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Cytochrome c oxidase subunit E
(25)
Family
:
Cytochrome c oxidase subunit E
(25)
Protein domain
:
Cytochrome c oxidase subunit E
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
01a
d3asne_
E:
01b
d3asnr_
R:
Fold
:
Cytochrome c oxidase subunit h
(26)
Superfamily
:
Cytochrome c oxidase subunit h
(26)
Family
:
Cytochrome c oxidase subunit h
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
02a
d3asnh_
H:
02b
d3asnu_
U:
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Periplasmic domain of cytochrome c oxidase subunit II
(70)
Protein domain
:
automated matches
(5)
Cow (Bos taurus) [TaxId: 9913]
(1)
03a
d3asnb2
B:91-227
03b
d3asno2
O:91-227
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Cytochrome c oxidase subunit I-like
(65)
Superfamily
:
Cytochrome c oxidase subunit I-like
(65)
Family
:
Cytochrome c oxidase subunit I-like
(65)
Protein domain
:
automated matches
(24)
Cow (Bos taurus) [TaxId: 9913]
(18)
04a
d3asna_
A:
04b
d3asnn_
N:
Fold
:
Cytochrome c oxidase subunit III-like
(29)
Superfamily
:
Cytochrome c oxidase subunit III-like
(29)
Family
:
Cytochrome c oxidase subunit III-like
(29)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit III
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
05a
d3asnc_
C:
05b
d3asnp_
P:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
06a
d3asnd_
D:
06b
d3asnq_
Q:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
07a
d3asng_
G:
07b
d3asnt_
T:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
08a
d3asni_
I:
08b
d3asnv_
V:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
09a
d3asnj_
J:
09b
d3asnw_
W:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
10a
d3asnk_
K:
10b
d3asnx_
X:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
11a
d3asnl_
L:
11b
d3asny_
Y:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
12a
d3asnm_
M:
12b
d3asnz_
Z:
Fold
:
Transmembrane helix hairpin
(84)
Superfamily
:
Cytochrome c oxidase subunit II-like, transmembrane region
(66)
Family
:
automated matches
(9)
Protein domain
:
automated matches
(9)
Cow (Bos taurus) [TaxId: 9913]
(1)
13a
d3asnb1
B:1-90
13b
d3asno1
O:1-90
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Rubredoxin-like
(127)
Family
:
Cytochrome c oxidase Subunit F
(25)
Protein domain
:
Cytochrome c oxidase Subunit F
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
14a
d3asnf_
F:
14b
d3asns_
S:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (679 KB)
Header - Asym.Unit
Biol.Unit 1 (335 KB)
Header - Biol.Unit 1
Biol.Unit 2 (332 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3ASN
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help