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3A96
Asym. Unit
Info
Asym.Unit (28 KB)
Biol.Unit 1 (24 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME SOAKED WITH 100MM RHCL3 AT PH2.2
Authors
:
S. Abe, T. Koshiyama, T. Ohki, T. Hikage, Y. Watanabe, T. Ueno
Date
:
15 Oct 09 (Deposition) - 09 Mar 10 (Release) - 09 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Allergen, Antimicrobial, Bacteriolytic Enzyme, Disulfide Bond, Glycosidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Ueno, S. Abe, T. Koshiyama, T. Ohki, T. Hikage, Y. Watanabe
Elucidation Of Metal-Ion Accumulation Induced By Hydrogen Bonds On Protein Surfaces By Using Porous Lysozyme Crystals Containing Rh(Iii) Ions As The Model Surfaces
Chemistry V. 16 2730 2010
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: SODIUM ION (NAa)
3a: RHODIUM(III) ION (RH3a)
3b: RHODIUM(III) ION (RH3b)
3c: RHODIUM(III) ION (RH3c)
3d: RHODIUM(III) ION (RH3d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
NA
1
Ligand/Ion
SODIUM ION
3
RH3
4
Ligand/Ion
RHODIUM(III) ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:60 , CYS A:64 , SER A:72 , ARG A:73 , HOH A:140 , HOH A:191
BINDING SITE FOR RESIDUE NA A 130
2
AC2
SOFTWARE
TYR A:23 , ASN A:113
BINDING SITE FOR RESIDUE CL A 131
3
AC3
SOFTWARE
ASN A:65 , GLY A:67 , ARG A:68 , THR A:69 , SER A:72 , HOH A:140
BINDING SITE FOR RESIDUE CL A 132
4
AC4
SOFTWARE
SER A:24 , GLY A:26 , GLN A:121
BINDING SITE FOR RESIDUE CL A 133
5
AC5
SOFTWARE
LYS A:33
BINDING SITE FOR RESIDUE CL A 134
6
AC6
SOFTWARE
HOH A:162 , HOH A:190 , HOH A:205 , HOH A:206 , HOH A:212
BINDING SITE FOR RESIDUE RH3 A 135
7
AC7
SOFTWARE
ASP A:18 , HOH A:204 , HOH A:211 , HOH A:222 , HOH A:226
BINDING SITE FOR RESIDUE RH3 A 136
8
AC8
SOFTWARE
ARG A:14 , HOH A:160 , HOH A:181
BINDING SITE FOR RESIDUE RH3 A 137
9
AC9
SOFTWARE
HOH A:139 , HOH A:208 , HOH A:209 , HOH A:210
BINDING SITE FOR RESIDUE RH3 A 138
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:1-129)
2: LACTALBUMIN_LYSOZYME_1 (A:76-94)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LYSC_CHICK
19-147
1
A:1-129
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LYSC_CHICK
94-112
1
A:76-94
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:1-28)
Exon 1.2 (A:28-82)
Exon 1.3 (A:82-108)
Exon 1.4a (A:108-129)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4a
5: Boundary 1.4a/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSGALT00000016196
1a
ENSGALE00000107726
chr1:
37298007-37298210
204
LYSC_CHICK
1-46
46
1
A:1-28
28
1.2
ENSGALT00000016196
2
ENSGALE00000107723
chr1:
37299463-37299624
162
LYSC_CHICK
46-100
55
1
A:28-82
55
1.3
ENSGALT00000016196
3
ENSGALE00000107724
chr1:
37301396-37301474
79
LYSC_CHICK
100-126
27
1
A:82-108
27
1.4a
ENSGALT00000016196
4a
ENSGALE00000107725
chr1:
37301556-37301734
179
LYSC_CHICK
126-147
22
1
A:108-129
22
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3a96a_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
Lysozyme
(696)
Chicken (Gallus gallus) [TaxId: 9031]
(459)
1a
d3a96a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3a96A00 (A:1-129)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.10, no name defined]
(605)
Chicken (Gallus gallus)
(228)
1a
3a96A00
A:1-129
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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