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3A5O
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A DICTYOSTELIUM P109I CA2+-ACTIN IN COMPLEX WITH HUMAN GELSOLIN SEGMENT 1
Authors
:
K. Murakami, T. Yasunaga, T. Q. Noguchi, T. Q. Uyeda, T. Wakabayashi
Date
:
09 Aug 09 (Deposition) - 27 Oct 10 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : C,S
Biol. Unit 1: C,S (1x)
Keywords
:
Actin, Adp, Hydrolysis, Actin Capping, Actin-Binding, Cytoskeleton, Atp-Binding, Nucleotide-Binding, Structural Protein, Contractile Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
K. Murakami, T. Yasunaga, T. Q. P. Noguchi, Y. Gomibuchi, K. X. Ngo, T. Q. P. Uyeda, T. Wakabayashi
Structural Basis For Actin Assembly, Activation Of Atp Hydrolysis, And Delayed Phosphate Release
Cell(Cambridge, Mass. ) V. 143 275 2010
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: 4-METHYL-HISTIDINE (HICa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
3
Ligand/Ion
CALCIUM ION
3
HIC
1
Mod. Amino Acid
4-METHYL-HISTIDINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY S:43 , ASP S:44 , GLU S:75 , VAL S:123 , HOH S:1031 , HOH S:1117
BINDING SITE FOR RESIDUE CA S 128
2
AC2
SOFTWARE
GLU C:167 , HOH C:1223 , ASP S:87 , GLY S:92 , ALA S:94 , HOH S:1004 , HOH S:1082
BINDING SITE FOR RESIDUE CA S 129
3
AC3
SOFTWARE
ATP C:376 , HOH C:1001 , HOH C:1008 , HOH C:1050 , HOH C:1065 , HOH C:1108
BINDING SITE FOR RESIDUE CA C 377
4
AC4
SOFTWARE
GLY C:13 , SER C:14 , GLY C:15 , MET C:16 , LYS C:18 , GLY C:156 , ASP C:157 , GLY C:158 , VAL C:159 , GLY C:182 , ARG C:210 , LYS C:213 , GLU C:214 , GLY C:301 , GLY C:302 , THR C:303 , MET C:305 , PHE C:306 , CA C:377 , HOH C:1009 , HOH C:1065 , HOH C:1108 , HOH C:1134 , HOH C:1164 , HOH C:1222 , HOH C:1294 , HOH C:1305
BINDING SITE FOR RESIDUE ATP C 376
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024690 (A80T, chain S, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024690
A
129
T
GELS_HUMAN
Polymorphism
2230287
S
A
80
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (C:53-63)
2: ACTINS_ACT_LIKE (C:104-116)
3: ACTINS_2 (C:356-364)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACT1_DICDI
54-64
1
C:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACT1_DICDI
105-117
1
C:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACT1_DICDI
357-365
1
C:356-364
[
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Exons
(3, 3)
Info
All Exons
Exon 1.16d (S:5-68)
Exon 1.17 (S:68-119)
Exon 1.18b (S:120-127)
View:
Select:
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All Exon Boundaries
1: Boundary 1.14/1.16d
2: Boundary 1.16d/1.17
3: Boundary 1.17/1.18b
4: Boundary 1.18b/1.18f
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.14
ENST00000373818
14
ENSE00001461665
chr9:
124062071-124062283
213
GELS_HUMAN
1-48
48
0
-
-
1.16d
ENST00000373818
16d
ENSE00001725493
chr9:
124064241-124064445
205
GELS_HUMAN
49-117
69
1
S:5-68
64
1.17
ENST00000373818
17
ENSE00001745162
chr9:
124065189-124065343
155
GELS_HUMAN
117-168
52
1
S:68-119
52
1.18b
ENST00000373818
18b
ENSE00001764209
chr9:
124072962-124073123
162
GELS_HUMAN
169-222
54
1
S:120-127
8
1.18f
ENST00000373818
18f
ENSE00001689299
chr9:
124074617-124074766
150
GELS_HUMAN
223-272
50
0
-
-
1.18i
ENST00000373818
18i
ENSE00001727906
chr9:
124076212-124076301
90
GELS_HUMAN
273-302
30
0
-
-
1.19b
ENST00000373818
19b
ENSE00001732099
chr9:
124079364-124079496
133
GELS_HUMAN
303-347
45
0
-
-
1.20
ENST00000373818
20
ENSE00001734404
chr9:
124080684-124080772
89
GELS_HUMAN
347-376
30
0
-
-
1.21a
ENST00000373818
21a
ENSE00001618926
chr9:
124080943-124081158
216
GELS_HUMAN
377-448
72
0
-
-
1.22b
ENST00000373818
22b
ENSE00001591416
chr9:
124083546-124083679
134
GELS_HUMAN
449-493
45
0
-
-
1.23
ENST00000373818
23
ENSE00001735249
chr9:
124086832-124086922
91
GELS_HUMAN
493-523
31
0
-
-
1.24a
ENST00000373818
24a
ENSE00001704432
chr9:
124088790-124088960
171
GELS_HUMAN
524-580
57
0
-
-
1.25
ENST00000373818
25
ENSE00001668309
chr9:
124089586-124089760
175
GELS_HUMAN
581-639
59
0
-
-
1.26b
ENST00000373818
26b
ENSE00001721539
chr9:
124091169-124091293
125
GELS_HUMAN
639-680
42
0
-
-
1.26c
ENST00000373818
26c
ENSE00001771020
chr9:
124091516-124091593
78
GELS_HUMAN
681-706
26
0
-
-
1.27a
ENST00000373818
27a
ENSE00001779366
chr9:
124093666-124093726
61
GELS_HUMAN
707-727
21
0
-
-
1.28d
ENST00000373818
28d
ENSE00001732346
chr9:
124094712-124095120
409
GELS_HUMAN
727-782
56
0
-
-
[
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3a5os_ (S:)
2a: SCOP_d3a5oc2 (C:147-375)
3a: SCOP_d3a5oc1 (C:6-146)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Gelsolin-like
(96)
Superfamily
:
Actin depolymerizing proteins
(88)
Family
:
Gelsolin-like
(43)
Protein domain
:
Gelsolin
(33)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d3a5os_
S:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
automated matches
(47)
Slime mold (Dictyostelium discoideum) [TaxId: 44689]
(4)
2a
d3a5oc2
C:147-375
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Slime mold (Dictyostelium discoideum) [TaxId: 44689]
(4)
3a
d3a5oc1
C:6-146
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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