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3A29
Asym. Unit
Info
Asym.Unit (208 KB)
Biol.Unit 1 (204 KB)
Biol.Unit 2 (103 KB)
Biol.Unit 3 (104 KB)
Biol.Unit 4 (104 KB)
Biol.Unit 5 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN LIVER FBPASE IN COMPLEX WITH TRICYCLIC INHIBITOR
Authors
:
M. Takahashi, J. Sone, H. Hanzawa
Date
:
08 May 09 (Deposition) - 06 Oct 09 (Release) - 06 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: A,C (1x)
Biol. Unit 4: B,D (1x)
Biol. Unit 5: C,D (1x)
Keywords
:
Hydrolase, Allosteric Enzyme, Carbohydrate Metabolism, Disease Mutation, Gluconeogenesis, Magnesium, Metal- Binding, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Tsukada, M. Takahashi, T. Takemoto, O. Kanno, T. Yamane, S. Kawamura, T. Nishi
Synthesis, Sar, And X-Ray Structure Of Tricyclic Compounds As Potent Fbpase Inhibitors
Bioorg. Med. Chem. Lett. V. 19 5909 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 2-AMINO-4,5-DIHYDRONAPHTHO[1,2-D][... (2T0a)
1b: 2-AMINO-4,5-DIHYDRONAPHTHO[1,2-D][... (2T0b)
1c: 2-AMINO-4,5-DIHYDRONAPHTHO[1,2-D][... (2T0c)
1d: 2-AMINO-4,5-DIHYDRONAPHTHO[1,2-D][... (2T0d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2T0
4
Ligand/Ion
2-AMINO-4,5-DIHYDRONAPHTHO[1,2-D][1,3]THIAZOL-8-YLDIHYDROGEN PHOSPHATE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:17 , GLU A:20 , GLY A:21 , ALA A:24 , GLY A:26 , THR A:27 , GLY A:28 , GLU A:29 , LEU A:30 , THR A:31 , LYS A:112 , TYR A:113 , ARG A:140 , HOH A:361 , HOH A:375
BINDING SITE FOR RESIDUE 2T0 A 401
2
AC2
SOFTWARE
VAL B:17 , GLU B:20 , GLY B:21 , ALA B:24 , GLY B:26 , THR B:27 , GLY B:28 , GLU B:29 , LEU B:30 , THR B:31 , LYS B:112 , TYR B:113 , ARG B:140 , MET B:177 , HOH B:354 , HOH B:410
BINDING SITE FOR RESIDUE 2T0 B 401
3
AC3
SOFTWARE
VAL C:17 , GLU C:20 , GLY C:21 , ALA C:24 , THR C:27 , GLY C:28 , GLU C:29 , LEU C:30 , THR C:31 , LYS C:112 , TYR C:113 , MET C:177 , HOH C:350 , HOH C:418 , HOH C:434 , HOH C:435
BINDING SITE FOR RESIDUE 2T0 C 401
4
AC4
SOFTWARE
VAL D:17 , GLU D:20 , GLY D:21 , ALA D:24 , GLY D:26 , THR D:27 , GLY D:28 , GLU D:29 , LEU D:30 , THR D:31 , LYS D:112 , TYR D:113 , ARG D:140 , MET D:177 , HOH D:339 , HOH D:375
BINDING SITE FOR RESIDUE 2T0 D 401
[
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]
SAPs(SNPs)/Variants
(8, 32)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_002380 (G163S, chain A/B/C/D, )
2: VAR_002381 (A176D, chain A/B/C/D, )
3: VAR_038812 (F193S, chain A/B/C/D, )
4: VAR_022212 (K217K, chain A/B/C/D, )
5: VAR_022213 (F232I, chain A/B/C/D, )
6: VAR_022214 (R254L, chain A/B/C/D, )
7: VAR_038813 (P283R, chain A/B/C/D, )
8: VAR_002382 (V324A, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_002380
G
164
S
F16P1_HUMAN
Disease (FBPD)
---
A/B/C/D
G
163
S
2
UniProt
VAR_002381
A
177
D
F16P1_HUMAN
Disease (FBPD)
---
A/B/C/D
A
176
D
3
UniProt
VAR_038812
F
194
S
F16P1_HUMAN
Disease (FBPD)
---
A/B/C/D
F
193
S
4
UniProt
VAR_022212
R
218
K
F16P1_HUMAN
Polymorphism
1769259
A/B/C/D
K
217
K
5
UniProt
VAR_022213
F
233
I
F16P1_HUMAN
Polymorphism
2297085
A/B/C/D
F
232
I
6
UniProt
VAR_022214
R
255
L
F16P1_HUMAN
Polymorphism
28369761
A/B/C/D
R
254
L
7
UniProt
VAR_038813
P
284
R
F16P1_HUMAN
Disease (FBPD)
---
A/B/C/D
P
283
R
8
UniProt
VAR_002382
V
325
A
F16P1_HUMAN
Polymorphism
---
A/B/C/D
V
324
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FBPASE (A:273-285,B:273-285,C:273-285,D:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FBPASE
PS00124
Fructose-1-6-bisphosphatase active site.
F16P1_HUMAN
274-286
4
A:273-285
B:273-285
C:273-285
D:273-285
[
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]
Exons
(7, 28)
Info
All Exons
Exon 1.2a (A:9-56 | B:9-56 | C:9-56 | D:9-56)
Exon 1.3 (A:56-110 (gaps) | B:56-110 (gaps) ...)
Exon 1.4 (A:111-141 | B:111-141 | C:111-141 ...)
Exon 1.5 (A:142-188 | B:142-188 | C:142-188 ...)
Exon 1.6 (A:189-234 | B:189-234 | C:189-234 ...)
Exon 1.7 (A:235-274 | B:235-274 | C:235-274 ...)
Exon 1.8b (A:275-335 | B:275-335 | C:275-335 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8b
8: Boundary 1.8b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000375326
2a
ENSE00001466714
chr9:
97401789-97401423
367
F16P1_HUMAN
1-57
57
4
A:9-56
B:9-56
C:9-56
D:9-56
48
48
48
48
1.3
ENST00000375326
3
ENSE00001667291
chr9:
97382773-97382611
163
F16P1_HUMAN
57-111
55
4
A:56-110 (gaps)
B:56-110 (gaps)
C:56-110 (gaps)
D:56-110 (gaps)
55
55
55
55
1.4
ENST00000375326
4
ENSE00001759285
chr9:
97380142-97380050
93
F16P1_HUMAN
112-142
31
4
A:111-141
B:111-141
C:111-141
D:111-141
31
31
31
31
1.5
ENST00000375326
5
ENSE00000895738
chr9:
97372343-97372203
141
F16P1_HUMAN
143-189
47
4
A:142-188
B:142-188
C:142-188
D:142-188
47
47
47
47
1.6
ENST00000375326
6
ENSE00002196628
chr9:
97369234-97369097
138
F16P1_HUMAN
190-235
46
4
A:189-234
B:189-234
C:189-234
D:189-234
46
46
46
46
1.7
ENST00000375326
7
ENSE00000895736
chr9:
97367858-97367739
120
F16P1_HUMAN
236-275
40
4
A:235-274
B:235-274
C:235-274
D:235-274
40
40
40
40
1.8b
ENST00000375326
8b
ENSE00001889161
chr9:
97365854-97365415
440
F16P1_HUMAN
276-338
63
4
A:275-335
B:275-335
C:275-335
D:275-335
61
61
61
61
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3a29a_ (A:)
1b: SCOP_d3a29c_ (C:)
1c: SCOP_d3a29d_ (D:)
1d: SCOP_d3a29b_ (B:)
View:
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(
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(
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(
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Carbohydrate phosphatase
(140)
Superfamily
:
Carbohydrate phosphatase
(140)
Family
:
Inositol monophosphatase/fructose-1,6-bisphosphatase-like
(121)
Protein domain
:
Fructose-1,6-bisphosphatase
(75)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3a29a_
A:
1b
d3a29c_
C:
1c
d3a29d_
D:
1d
d3a29b_
B:
[
close SCOP info
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3a29B01 (B:9-199)
1b: CATH_3a29C01 (C:9-199)
1c: CATH_3a29D01 (D:9-199)
1d: CATH_3a29A01 (A:9-199)
2a: CATH_3a29A02 (A:200-334)
2b: CATH_3a29B02 (B:200-334)
2c: CATH_3a29C02 (C:200-334)
2d: CATH_3a29D02 (D:200-334)
View:
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Classes
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(
)
Architectures
(
)
(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Fructose-1,6-Bisphosphatase; Chain A, domain 1
(114)
Homologous Superfamily
:
Fructose-1,6-Bisphosphatase, subunit A, domain 1
(114)
Human (Homo sapiens)
(25)
1a
3a29B01
B:9-199
1b
3a29C01
C:9-199
1c
3a29D01
D:9-199
1d
3a29A01
A:9-199
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
[code=3.40.190.80, no name defined]
(109)
Human (Homo sapiens)
(25)
2a
3a29A02
A:200-334
2b
3a29B02
B:200-334
2c
3a29C02
C:200-334
2d
3a29D02
D:200-334
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Asym.Unit (208 KB)
Header - Asym.Unit
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