3A29 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN LIVER FBPASE IN COMPLEX WITH TRICYCLIC INHIBITOR

Authors :   M. Takahashi, J. Sone, H. Hanzawa

Date :   08 May 09 (Deposition) - 06 Oct 09 (Release) - 06 Oct 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,B  (1x)
Biol. Unit 3: A,C  (1x)
Biol. Unit 4: B,D  (1x)
Biol. Unit 5: C,D  (1x)

Keywords :   Hydrolase, Allosteric Enzyme, Carbohydrate Metabolism, Disease Mutation, Gluconeogenesis, Magnesium, Metal- Binding, Polymorphism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Tsukada, M. Takahashi, T. Takemoto, O. Kanno, T. Yamane, S. Kawamura, T. Nishi
Synthesis, Sar, And X-Ray Structure Of Tricyclic Compounds As Potent Fbpase Inhibitors
Bioorg. Med. Chem. Lett. V. 19 5909 2009
PubMed-ID: 19762234 | Reference-DOI: 10.1016/J.BMCL.2009.08.081
(for further references see the PDB file header)

Molecule 1 - FRUCTOSE-1,6-BISPHOSPHATASE 1
	Chains	:	A, B, C, D
	EC Number	:	3.1.3.11
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET3A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FBP1, FBP
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FBPASE 1, D-FRUCTOSE-1,6-BISPHOSPHATE 1- PHOSPHOHYDROLASE 1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A	B
Biological Unit 3 (1x)	:	A		C
Biological Unit 4 (1x)	:		B		D
Biological Unit 5 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	2T0	4	Ligand/Ion	2-AMINO-4,5-DIHYDRONAPHTHO[1,2-D][1,3]THIAZOL-8-YLDIHYDROGEN PHOSPHATE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	2T0	4	Ligand/Ion	2-AMINO-4,5-DIHYDRONAPHTHO[1,2-D][1,3]THIAZOL-8-YLDIHYDROGEN PHOSPHATE

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	2T0	2	Ligand/Ion	2-AMINO-4,5-DIHYDRONAPHTHO[1,2-D][1,3]THIAZOL-8-YLDIHYDROGEN PHOSPHATE

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	2T0	2	Ligand/Ion	2-AMINO-4,5-DIHYDRONAPHTHO[1,2-D][1,3]THIAZOL-8-YLDIHYDROGEN PHOSPHATE

Biological Unit 4 (1, 2)

No.	Name	Count	Type	Full Name
1	2T0	2	Ligand/Ion	2-AMINO-4,5-DIHYDRONAPHTHO[1,2-D][1,3]THIAZOL-8-YLDIHYDROGEN PHOSPHATE

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	2T0	2	Ligand/Ion	2-AMINO-4,5-DIHYDRONAPHTHO[1,2-D][1,3]THIAZOL-8-YLDIHYDROGEN PHOSPHATE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:17 , GLU A:20 , GLY A:21 , ALA A:24 , GLY A:26 , THR A:27 , GLY A:28 , GLU A:29 , LEU A:30 , THR A:31 , LYS A:112 , TYR A:113 , ARG A:140 , HOH A:361 , HOH A:375	BINDING SITE FOR RESIDUE 2T0 A 401
2	AC2	SOFTWARE	VAL B:17 , GLU B:20 , GLY B:21 , ALA B:24 , GLY B:26 , THR B:27 , GLY B:28 , GLU B:29 , LEU B:30 , THR B:31 , LYS B:112 , TYR B:113 , ARG B:140 , MET B:177 , HOH B:354 , HOH B:410	BINDING SITE FOR RESIDUE 2T0 B 401
3	AC3	SOFTWARE	VAL C:17 , GLU C:20 , GLY C:21 , ALA C:24 , THR C:27 , GLY C:28 , GLU C:29 , LEU C:30 , THR C:31 , LYS C:112 , TYR C:113 , MET C:177 , HOH C:350 , HOH C:418 , HOH C:434 , HOH C:435	BINDING SITE FOR RESIDUE 2T0 C 401
4	AC4	SOFTWARE	VAL D:17 , GLU D:20 , GLY D:21 , ALA D:24 , GLY D:26 , THR D:27 , GLY D:28 , GLU D:29 , LEU D:30 , THR D:31 , LYS D:112 , TYR D:113 , ARG D:140 , MET D:177 , HOH D:339 , HOH D:375	BINDING SITE FOR RESIDUE 2T0 D 401

(no "SS Bond" information available for 3A29)

(no "Cis Peptide Bond" information available for 3A29)

Asymmetric Unit (9, 36)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_075492	R	158	W	F16P1_HUMAN	Unclassified (FBP1D)	766005419	A/B/C/D	R	157	W
2	UniProt	VAR_002380	G	164	S	F16P1_HUMAN	Disease (FBP1D)	121918188	A/B/C/D	G	163	S
3	UniProt	VAR_002381	A	177	D	F16P1_HUMAN	Disease (FBP1D)	121918189	A/B/C/D	A	176	D
4	UniProt	VAR_038812	F	194	S	F16P1_HUMAN	Disease (FBP1D)	121918191	A/B/C/D	F	193	S
5	UniProt	VAR_022212	R	218	K	F16P1_HUMAN	Polymorphism	1769259	A/B/C/D	K	217	K
6	UniProt	VAR_022213	F	233	I	F16P1_HUMAN	Polymorphism	2297085	A/B/C/D	F	232	I
7	UniProt	VAR_022214	R	255	L	F16P1_HUMAN	Polymorphism	28369761	A/B/C/D	R	254	L
8	UniProt	VAR_038813	P	284	R	F16P1_HUMAN	Disease (FBP1D)	121918192	A/B/C/D	P	283	R
9	UniProt	VAR_002382	V	325	A	F16P1_HUMAN	Polymorphism	---	A/B/C/D	V	324	A

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (9, 36)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_075492	R	158	W	F16P1_HUMAN	Unclassified (FBP1D)	766005419	A/B/C/D	R	157	W
2	UniProt	VAR_002380	G	164	S	F16P1_HUMAN	Disease (FBP1D)	121918188	A/B/C/D	G	163	S
3	UniProt	VAR_002381	A	177	D	F16P1_HUMAN	Disease (FBP1D)	121918189	A/B/C/D	A	176	D
4	UniProt	VAR_038812	F	194	S	F16P1_HUMAN	Disease (FBP1D)	121918191	A/B/C/D	F	193	S
5	UniProt	VAR_022212	R	218	K	F16P1_HUMAN	Polymorphism	1769259	A/B/C/D	K	217	K
6	UniProt	VAR_022213	F	233	I	F16P1_HUMAN	Polymorphism	2297085	A/B/C/D	F	232	I
7	UniProt	VAR_022214	R	255	L	F16P1_HUMAN	Polymorphism	28369761	A/B/C/D	R	254	L
8	UniProt	VAR_038813	P	284	R	F16P1_HUMAN	Disease (FBP1D)	121918192	A/B/C/D	P	283	R
9	UniProt	VAR_002382	V	325	A	F16P1_HUMAN	Polymorphism	---	A/B/C/D	V	324	A

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (9, 18)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_075492	R	158	W	F16P1_HUMAN	Unclassified (FBP1D)	766005419	A/B	R	157	W
2	UniProt	VAR_002380	G	164	S	F16P1_HUMAN	Disease (FBP1D)	121918188	A/B	G	163	S
3	UniProt	VAR_002381	A	177	D	F16P1_HUMAN	Disease (FBP1D)	121918189	A/B	A	176	D
4	UniProt	VAR_038812	F	194	S	F16P1_HUMAN	Disease (FBP1D)	121918191	A/B	F	193	S
5	UniProt	VAR_022212	R	218	K	F16P1_HUMAN	Polymorphism	1769259	A/B	K	217	K
6	UniProt	VAR_022213	F	233	I	F16P1_HUMAN	Polymorphism	2297085	A/B	F	232	I
7	UniProt	VAR_022214	R	255	L	F16P1_HUMAN	Polymorphism	28369761	A/B	R	254	L
8	UniProt	VAR_038813	P	284	R	F16P1_HUMAN	Disease (FBP1D)	121918192	A/B	P	283	R
9	UniProt	VAR_002382	V	325	A	F16P1_HUMAN	Polymorphism	---	A/B	V	324	A

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (9, 18)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_075492	R	158	W	F16P1_HUMAN	Unclassified (FBP1D)	766005419	A/C	R	157	W
2	UniProt	VAR_002380	G	164	S	F16P1_HUMAN	Disease (FBP1D)	121918188	A/C	G	163	S
3	UniProt	VAR_002381	A	177	D	F16P1_HUMAN	Disease (FBP1D)	121918189	A/C	A	176	D
4	UniProt	VAR_038812	F	194	S	F16P1_HUMAN	Disease (FBP1D)	121918191	A/C	F	193	S
5	UniProt	VAR_022212	R	218	K	F16P1_HUMAN	Polymorphism	1769259	A/C	K	217	K
6	UniProt	VAR_022213	F	233	I	F16P1_HUMAN	Polymorphism	2297085	A/C	F	232	I
7	UniProt	VAR_022214	R	255	L	F16P1_HUMAN	Polymorphism	28369761	A/C	R	254	L
8	UniProt	VAR_038813	P	284	R	F16P1_HUMAN	Disease (FBP1D)	121918192	A/C	P	283	R
9	UniProt	VAR_002382	V	325	A	F16P1_HUMAN	Polymorphism	---	A/C	V	324	A

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (9, 18)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_075492	R	158	W	F16P1_HUMAN	Unclassified (FBP1D)	766005419	B/D	R	157	W
2	UniProt	VAR_002380	G	164	S	F16P1_HUMAN	Disease (FBP1D)	121918188	B/D	G	163	S
3	UniProt	VAR_002381	A	177	D	F16P1_HUMAN	Disease (FBP1D)	121918189	B/D	A	176	D
4	UniProt	VAR_038812	F	194	S	F16P1_HUMAN	Disease (FBP1D)	121918191	B/D	F	193	S
5	UniProt	VAR_022212	R	218	K	F16P1_HUMAN	Polymorphism	1769259	B/D	K	217	K
6	UniProt	VAR_022213	F	233	I	F16P1_HUMAN	Polymorphism	2297085	B/D	F	232	I
7	UniProt	VAR_022214	R	255	L	F16P1_HUMAN	Polymorphism	28369761	B/D	R	254	L
8	UniProt	VAR_038813	P	284	R	F16P1_HUMAN	Disease (FBP1D)	121918192	B/D	P	283	R
9	UniProt	VAR_002382	V	325	A	F16P1_HUMAN	Polymorphism	---	B/D	V	324	A

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (9, 18)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_075492	R	158	W	F16P1_HUMAN	Unclassified (FBP1D)	766005419	C/D	R	157	W
2	UniProt	VAR_002380	G	164	S	F16P1_HUMAN	Disease (FBP1D)	121918188	C/D	G	163	S
3	UniProt	VAR_002381	A	177	D	F16P1_HUMAN	Disease (FBP1D)	121918189	C/D	A	176	D
4	UniProt	VAR_038812	F	194	S	F16P1_HUMAN	Disease (FBP1D)	121918191	C/D	F	193	S
5	UniProt	VAR_022212	R	218	K	F16P1_HUMAN	Polymorphism	1769259	C/D	K	217	K
6	UniProt	VAR_022213	F	233	I	F16P1_HUMAN	Polymorphism	2297085	C/D	F	232	I
7	UniProt	VAR_022214	R	255	L	F16P1_HUMAN	Polymorphism	28369761	C/D	R	254	L
8	UniProt	VAR_038813	P	284	R	F16P1_HUMAN	Disease (FBP1D)	121918192	C/D	P	283	R
9	UniProt	VAR_002382	V	325	A	F16P1_HUMAN	Polymorphism	---	C/D	V	324	A

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FBPASE	PS00124	Fructose-1-6-bisphosphatase active site.	F16P1_HUMAN	274-286	4	A:273-285 B:273-285 C:273-285 D:273-285

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FBPASE	PS00124	Fructose-1-6-bisphosphatase active site.	F16P1_HUMAN	274-286	4	A:273-285 B:273-285 C:273-285 D:273-285

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FBPASE	PS00124	Fructose-1-6-bisphosphatase active site.	F16P1_HUMAN	274-286	2	A:273-285 B:273-285 - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FBPASE	PS00124	Fructose-1-6-bisphosphatase active site.	F16P1_HUMAN	274-286	2	A:273-285 - C:273-285 -

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FBPASE	PS00124	Fructose-1-6-bisphosphatase active site.	F16P1_HUMAN	274-286	2	- B:273-285 - D:273-285

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FBPASE	PS00124	Fructose-1-6-bisphosphatase active site.	F16P1_HUMAN	274-286	2	- - C:273-285 D:273-285

Asymmetric Unit (7, 28)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2a	ENST00000375326	2a	ENSE00001466714	chr9:97401789-97401423	367	F16P1_HUMAN	1-57	57	4	A:9-56 B:9-56 C:9-56 D:9-56	48 48 48 48
1.3	ENST00000375326	3	ENSE00001667291	chr9:97382773-97382611	163	F16P1_HUMAN	57-111	55	4	A:56-110 (gaps) B:56-110 (gaps) C:56-110 (gaps) D:56-110 (gaps)	55 55 55 55
1.4	ENST00000375326	4	ENSE00001759285	chr9:97380142-97380050	93	F16P1_HUMAN	112-142	31	4	A:111-141 B:111-141 C:111-141 D:111-141	31 31 31 31
1.5	ENST00000375326	5	ENSE00000895738	chr9:97372343-97372203	141	F16P1_HUMAN	143-189	47	4	A:142-188 B:142-188 C:142-188 D:142-188	47 47 47 47
1.6	ENST00000375326	6	ENSE00002196628	chr9:97369234-97369097	138	F16P1_HUMAN	190-235	46	4	A:189-234 B:189-234 C:189-234 D:189-234	46 46 46 46
1.7	ENST00000375326	7	ENSE00000895736	chr9:97367858-97367739	120	F16P1_HUMAN	236-275	40	4	A:235-274 B:235-274 C:235-274 D:235-274	40 40 40 40
1.8b	ENST00000375326	8b	ENSE00001889161	chr9:97365854-97365415	440	F16P1_HUMAN	276-338	63	4	A:275-335 B:275-335 C:275-335 D:275-335	61 61 61 61

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:319
 aligned with F16P1_HUMAN | P09467 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:327
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       
          F16P1_HUMAN    10 DVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDCGVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYARDFDPAVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYEKHS 336
               SCOP domains d3a29a_ A: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 3a29A01 A:9-199 Fructose-1,6-Bisphosphatase, subunit         A, domain 1                                                                                                                       3a29A02 A:200-334  [code=3.40.190.80, no name defined]                                                                                 - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhh....--------..hhhhhhhhhhhhhhhh...eeeeee......ee.hhh.eeeeeeeeeeeehhhhh.....eeeeeeeee.......hhhhhh.hhhhh.eeeeeee...eeeeeee..eeeeeee......eeeee..........eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------W-----S------------D----------------S-----------------------K--------------I---------------------L----------------------------R----------------------------------------A----------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       -------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: A:9-56 UniProt: 1-57            ------------------------------------------------------Exon 1.4  PDB: A:111-141       Exon 1.5  PDB: A:142-188 UniProt: 143-189      Exon 1.6  PDB: A:189-234 UniProt: 190-235     Exon 1.7  PDB: A:235-274                Exon 1.8b  PDB: A:275-335 UniProt: 276-338 [INCOMPLETE]       Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.3  PDB: A:56-110 (gaps) UniProt: 57-111         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3a29 A   9 DVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGIAG--------VKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDCGVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYAKDFDPAVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYEKHS 335
                                    18        28        38        48        58  |      - |      78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       
                                                                               61       70

Chain B from PDB  Type:PROTEIN  Length:318
 aligned with F16P1_HUMAN | P09467 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:327
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       
          F16P1_HUMAN    10 DVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDCGVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYARDFDPAVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYEKHS 336
               SCOP domains d3a29b_ B: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 3a29B01 B:9-199 Fructose-1,6-Bisphosphatase, subunit          A, domain 1                                                                                                                      3a29B02 B:200-334  [code=3.40.190.80, no name defined]                                                                                 - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhh....---------.hhhhhhhhhhhhhhhh...eeeeee......ee.hhh.eeeeeeeeeeeehhhhhhhh..eeeeeeeee.......hhhhhh.hhhhh.eeeeeee...eeeeeee..eeeeeee......eeeee..........eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------W-----S------------D----------------S-----------------------K--------------I---------------------L----------------------------R----------------------------------------A----------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       -------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: B:9-56 UniProt: 1-57            ------------------------------------------------------Exon 1.4  PDB: B:111-141       Exon 1.5  PDB: B:142-188 UniProt: 143-189      Exon 1.6  PDB: B:189-234 UniProt: 190-235     Exon 1.7  PDB: B:235-274                Exon 1.8b  PDB: B:275-335 UniProt: 276-338 [INCOMPLETE]       Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.3  PDB: B:56-110 (gaps) UniProt: 57-111         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3a29 B   9 DVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGIAG---------KKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDCGVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYAKDFDPAVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYEKHS 335
                                    18        28        38        48        58  |      -  |     78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       
                                                                               61        71

Chain C from PDB  Type:PROTEIN  Length:318
 aligned with F16P1_HUMAN | P09467 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:327
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       
          F16P1_HUMAN    10 DVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDCGVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYARDFDPAVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYEKHS 336
               SCOP domains d3a29c_ C: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 3a29C01 C:9-199 Fructose-1,6-Bisphosphatase, subunit          A, domain 1                                                                                                                      3a29C02 C:200-334  [code=3.40.190.80, no name defined]                                                                                 - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhh....---------.hhhhhhhhhhhhhhhh...eeeeee......ee.hhh.eeeeeeeeeeeehhhhhhhh..eeeeeeeee.......hhhhhh.hhhhh.eeeeeee...eeeeeee..eeeeeee......eeeee..........eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------W-----S------------D----------------S-----------------------K--------------I---------------------L----------------------------R----------------------------------------A----------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       -------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: C:9-56 UniProt: 1-57            ------------------------------------------------------Exon 1.4  PDB: C:111-141       Exon 1.5  PDB: C:142-188 UniProt: 143-189      Exon 1.6  PDB: C:189-234 UniProt: 190-235     Exon 1.7  PDB: C:235-274                Exon 1.8b  PDB: C:275-335 UniProt: 276-338 [INCOMPLETE]       Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.3  PDB: C:56-110 (gaps) UniProt: 57-111         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3a29 C   9 DVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGIAG---------KKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDCGVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYAKDFDPAVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYEKHS 335
                                    18        28        38        48        58  |      -  |     78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       
                                                                               61        71

Chain D from PDB  Type:PROTEIN  Length:318
 aligned with F16P1_HUMAN | P09467 from UniProtKB/Swiss-Prot  Length:338

    Alignment length:327
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       
          F16P1_HUMAN    10 DVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGIAGSTNVTGDQVKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDCGVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYARDFDPAVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYEKHS 336
               SCOP domains d3a29d_ D: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 3a29D01 D:9-199 Fructose-1,6-Bisphosphatase, subunit          A, domain 1                                                                                                                      3a29D02 D:200-334  [code=3.40.190.80, no name defined]                                                                                 - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhh....---------.hhhhhhhhhhhhhhhh...eeeeee......ee.hhh.eeeeeeeeeeeehhhhhhhh..eeeeeeeee.......hhhhhh.hhhhh.eeeeeee...eeeeeee..eeeeeeee....eeeeee..........eee.hhhhhhhhhhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee....hhhhh..........eeeehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------W-----S------------D----------------S-----------------------K--------------I---------------------L----------------------------R----------------------------------------A----------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FBPASE       -------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: D:9-56 UniProt: 1-57            ------------------------------------------------------Exon 1.4  PDB: D:111-141       Exon 1.5  PDB: D:142-188 UniProt: 143-189      Exon 1.6  PDB: D:189-234 UniProt: 190-235     Exon 1.7  PDB: D:235-274                Exon 1.8b  PDB: D:275-335 UniProt: 276-338 [INCOMPLETE]       Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.3  PDB: D:56-110 (gaps) UniProt: 57-111         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3a29 D   9 DVNTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRKAGIAHLYGIAG---------KKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMDCGVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEGYAKDFDPAVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYECNPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPVILGSPDDVLEFLKVYEKHS 335
                                    18        28        38        48        58  |      -  |     78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       
                                                                               61        71

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Multi-domain proteins (alpha and beta) (2421)

Fold: Carbohydrate phosphatase (140)

Superfamily: Carbohydrate phosphatase (140)

Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like (121)

Protein domain: Fructose-1,6-bisphosphatase (75)

Human (Homo sapiens) [TaxId: 9606] (3)

1a	d3a29a_	A:
1b	d3a29c_	C:
1c	d3a29d_	D:
1d	d3a29b_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Fructose-1,6-Bisphosphatase; Chain A, domain 1 (114)

Homologous Superfamily: Fructose-1,6-Bisphosphatase, subunit A, domain 1 (114)

Human (Homo sapiens) (25)

1a	3a29B01	B:9-199
1b	3a29C01	C:9-199
1c	3a29D01	D:9-199
1d	3a29A01	A:9-199

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: D-Maltodextrin-Binding Protein; domain 2 (600)

Homologous Superfamily: [code=3.40.190.80, no name defined] (109)

Human (Homo sapiens) (25)

2a	3a29A02	A:200-334
2b	3a29B02	B:200-334
2c	3a29C02	C:200-334
2d	3a29D02	D:200-334

(no "Pfam Domain" information available for 3A29)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (F16P1_HUMAN | P09467)

molecular function
	GO:0016208	AMP binding	Interacting selectively and non-covalently with AMP, adenosine monophosphate.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity	Catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0048029	monosaccharide binding	Interacting selectively and non-covalently with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
	GO:0042578	phosphoric ester hydrolase activity	Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0035690	cellular response to drug	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0071286	cellular response to magnesium ion	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus.
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
	GO:0006002	fructose 6-phosphate metabolic process	The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism.
	GO:0006000	fructose metabolic process	The chemical reactions and pathways involving fructose, the ketohexose arabino-2-hexulose. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey.
	GO:0006094	gluconeogenesis	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0046580	negative regulation of Ras protein signal transduction	Any process that stops, prevents, or reduces the frequency, rate or extent of Ras protein signal transduction.
	GO:0030308	negative regulation of cell growth	Any process that stops, prevents, or reduces the frequency, rate, extent or direction of cell growth.
	GO:0045820	negative regulation of glycolytic process	Any process that stops, prevents, or reduces the frequency, rate or extent of glycolysis.
	GO:0051289	protein homotetramerization	The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
	GO:0006111	regulation of gluconeogenesis	Any process that modulates the frequency, rate or extent of gluconeogenesis, the formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

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	3a29
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(no "Related Entries Specified in the PDB File" available for 3A29)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (9, 36)

PROSITE Motifs (1, 4)

Exons (7, 28)

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CATH Domains (2, 8)

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