PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3A0H
Asym. Unit
Info
Asym.Unit (1.0 MB)
Biol.Unit 1 (965 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF I-SUBSTITUTED PHOTOSYSTEM II COMPLEX
Authors
:
K. Kawakami, Y. Umena, N. Kamiya, J. -R. Shen
Date
:
17 Mar 09 (Deposition) - 19 May 09 (Release) - 09 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C,D,E,F,H,I,J,K,L,M,N,O,T,U,V,X,Y,Z,a,b,c,d,e,f,h,i,j,k,l,m,n,o,t,u,v,x,y,z
Biol. Unit 1: A,B,C,D,E,F,H,I,J,K,L,M,N,O,T,U,V,X,Y,Z,a,b,c,d,e,f,h,i,j,k,l,m,n,o,t,u,v,x,y,z (1x)
Keywords
:
Multi-Membrane Protein Complex, Electron Transport, Herbicide Resistance, Iron, Membrane, Metal-Binding, Photosynthesis, Photosystem Ii, Thylakoid, Transmembrane, Transport, Heme, Reaction Center
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kawakami, Y. Umena, N. Kamiya, J. -R. Shen
Location Of Chloride And Its Possible Functions In Oxygen-Evolving Photosystem Ii Revealed By X-Ray Crystallography
Proc. Natl. Acad. Sci. Usa V. 106 8567 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(12, 182)
Info
All Hetero Components
01a: BETA-CAROTENE (BCRa)
01b: BETA-CAROTENE (BCRb)
01c: BETA-CAROTENE (BCRc)
01d: BETA-CAROTENE (BCRd)
01e: BETA-CAROTENE (BCRe)
01f: BETA-CAROTENE (BCRf)
01g: BETA-CAROTENE (BCRg)
01h: BETA-CAROTENE (BCRh)
01i: BETA-CAROTENE (BCRi)
01j: BETA-CAROTENE (BCRj)
01k: BETA-CAROTENE (BCRk)
01l: BETA-CAROTENE (BCRl)
01m: BETA-CAROTENE (BCRm)
01n: BETA-CAROTENE (BCRn)
01o: BETA-CAROTENE (BCRo)
01p: BETA-CAROTENE (BCRp)
01q: BETA-CAROTENE (BCRq)
01r: BETA-CAROTENE (BCRr)
01s: BETA-CAROTENE (BCRs)
01t: BETA-CAROTENE (BCRt)
01u: BETA-CAROTENE (BCRu)
01v: BETA-CAROTENE (BCRv)
02a: CHLOROPHYLL A (CLAa)
02aa: CHLOROPHYLL A (CLAaa)
02ab: CHLOROPHYLL A (CLAab)
02ac: CHLOROPHYLL A (CLAac)
02ad: CHLOROPHYLL A (CLAad)
02ae: CHLOROPHYLL A (CLAae)
02af: CHLOROPHYLL A (CLAaf)
02ag: CHLOROPHYLL A (CLAag)
02ah: CHLOROPHYLL A (CLAah)
02ai: CHLOROPHYLL A (CLAai)
02aj: CHLOROPHYLL A (CLAaj)
02ak: CHLOROPHYLL A (CLAak)
02al: CHLOROPHYLL A (CLAal)
02am: CHLOROPHYLL A (CLAam)
02an: CHLOROPHYLL A (CLAan)
02ao: CHLOROPHYLL A (CLAao)
02ap: CHLOROPHYLL A (CLAap)
02aq: CHLOROPHYLL A (CLAaq)
02ar: CHLOROPHYLL A (CLAar)
02as: CHLOROPHYLL A (CLAas)
02at: CHLOROPHYLL A (CLAat)
02au: CHLOROPHYLL A (CLAau)
02av: CHLOROPHYLL A (CLAav)
02aw: CHLOROPHYLL A (CLAaw)
02ax: CHLOROPHYLL A (CLAax)
02ay: CHLOROPHYLL A (CLAay)
02az: CHLOROPHYLL A (CLAaz)
02b: CHLOROPHYLL A (CLAb)
02ba: CHLOROPHYLL A (CLAba)
02bb: CHLOROPHYLL A (CLAbb)
02bc: CHLOROPHYLL A (CLAbc)
02bd: CHLOROPHYLL A (CLAbd)
02be: CHLOROPHYLL A (CLAbe)
02bf: CHLOROPHYLL A (CLAbf)
02bg: CHLOROPHYLL A (CLAbg)
02bh: CHLOROPHYLL A (CLAbh)
02bi: CHLOROPHYLL A (CLAbi)
02bj: CHLOROPHYLL A (CLAbj)
02bk: CHLOROPHYLL A (CLAbk)
02bl: CHLOROPHYLL A (CLAbl)
02bm: CHLOROPHYLL A (CLAbm)
02bn: CHLOROPHYLL A (CLAbn)
02bo: CHLOROPHYLL A (CLAbo)
02bp: CHLOROPHYLL A (CLAbp)
02bq: CHLOROPHYLL A (CLAbq)
02br: CHLOROPHYLL A (CLAbr)
02c: CHLOROPHYLL A (CLAc)
02d: CHLOROPHYLL A (CLAd)
02e: CHLOROPHYLL A (CLAe)
02f: CHLOROPHYLL A (CLAf)
02g: CHLOROPHYLL A (CLAg)
02h: CHLOROPHYLL A (CLAh)
02i: CHLOROPHYLL A (CLAi)
02j: CHLOROPHYLL A (CLAj)
02k: CHLOROPHYLL A (CLAk)
02l: CHLOROPHYLL A (CLAl)
02m: CHLOROPHYLL A (CLAm)
02n: CHLOROPHYLL A (CLAn)
02o: CHLOROPHYLL A (CLAo)
02p: CHLOROPHYLL A (CLAp)
02q: CHLOROPHYLL A (CLAq)
02r: CHLOROPHYLL A (CLAr)
02s: CHLOROPHYLL A (CLAs)
02t: CHLOROPHYLL A (CLAt)
02u: CHLOROPHYLL A (CLAu)
02v: CHLOROPHYLL A (CLAv)
02w: CHLOROPHYLL A (CLAw)
02x: CHLOROPHYLL A (CLAx)
02y: CHLOROPHYLL A (CLAy)
02z: CHLOROPHYLL A (CLAz)
03a: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDa)
03b: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDb)
03c: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDc)
03d: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDd)
03e: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDe)
03f: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDf)
03g: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDg)
03h: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDh)
04a: FE (II) ION (FE2a)
04b: FE (II) ION (FE2b)
05a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
05b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
05c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
05d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
06a: IODIDE ION (IODa)
06b: IODIDE ION (IODb)
06c: IODIDE ION (IODc)
06d: IODIDE ION (IODd)
06e: IODIDE ION (IODe)
06f: IODIDE ION (IODf)
06g: IODIDE ION (IODg)
06h: IODIDE ION (IODh)
06i: IODIDE ION (IODi)
06j: IODIDE ION (IODj)
07a: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGa)
07b: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGb)
08a: (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-... (MGEa)
08b: (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-... (MGEb)
08c: (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-... (MGEc)
08d: (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-... (MGEd)
08e: (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-... (MGEe)
08f: (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-... (MGEf)
08g: (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-... (MGEg)
08h: (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-... (MGEh)
09a: OXYGEN EVOLVING SYSTEM (OECa)
09b: OXYGEN EVOLVING SYSTEM (OECb)
10a: PHEOPHYTIN A (PHOa)
10b: PHEOPHYTIN A (PHOb)
10c: PHEOPHYTIN A (PHOc)
10d: PHEOPHYTIN A (PHOd)
11a: 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,... (PQ9a)
11b: 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,... (PQ9b)
11c: 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,... (PQ9c)
11d: 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,... (PQ9d)
12a: (UNKa)
12aa: (UNKaa)
12ab: (UNKab)
12ac: (UNKac)
12ad: (UNKad)
12ae: (UNKae)
12af: (UNKaf)
12ag: (UNKag)
12ah: (UNKah)
12ai: (UNKai)
12aj: (UNKaj)
12ak: (UNKak)
12al: (UNKal)
12am: (UNKam)
12an: (UNKan)
12ao: (UNKao)
12ap: (UNKap)
12aq: (UNKaq)
12ar: (UNKar)
12as: (UNKas)
12at: (UNKat)
12b: (UNKb)
12c: (UNKc)
12d: (UNKd)
12e: (UNKe)
12f: (UNKf)
12g: (UNKg)
12h: (UNKh)
12i: (UNKi)
12j: (UNKj)
12k: (UNKk)
12l: (UNKl)
12m: (UNKm)
12n: (UNKn)
12o: (UNKo)
12p: (UNKp)
12q: (UNKq)
12r: (UNKr)
12s: (UNKs)
12t: (UNKt)
12u: (UNKu)
12v: (UNKv)
12w: (UNKw)
12x: (UNKx)
12y: (UNKy)
12z: (UNKz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCR
22
Ligand/Ion
BETA-CAROTENE
2
CLA
70
Ligand/Ion
CHLOROPHYLL A
3
DGD
8
Ligand/Ion
DIGALACTOSYL DIACYL GLYCEROL (DGDG)
4
FE2
2
Ligand/Ion
FE (II) ION
5
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
6
IOD
10
Ligand/Ion
IODIDE ION
7
LHG
2
Ligand/Ion
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
8
MGE
8
Ligand/Ion
(1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE
9
OEC
2
Ligand/Ion
OXYGEN EVOLVING SYSTEM
10
PHO
4
Ligand/Ion
PHEOPHYTIN A
11
PQ9
4
Ligand/Ion
5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3-DIMETHYLBENZO-1,4-QUINONE
12
UNK
46
Mod. Amino Acid
[
close Hetero Component info
]
Sites
(135, 135)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: BC1 (SOFTWARE)
011: BC2 (SOFTWARE)
012: BC3 (SOFTWARE)
013: BC4 (SOFTWARE)
014: BC5 (SOFTWARE)
015: BC6 (SOFTWARE)
016: BC7 (SOFTWARE)
017: BC8 (SOFTWARE)
018: BC9 (SOFTWARE)
019: CC1 (SOFTWARE)
020: CC2 (SOFTWARE)
021: CC3 (SOFTWARE)
022: CC4 (SOFTWARE)
023: CC5 (SOFTWARE)
024: CC6 (SOFTWARE)
025: CC7 (SOFTWARE)
026: CC8 (SOFTWARE)
027: CC9 (SOFTWARE)
028: DC1 (SOFTWARE)
029: DC2 (SOFTWARE)
030: DC3 (SOFTWARE)
031: DC4 (SOFTWARE)
032: DC5 (SOFTWARE)
033: DC6 (SOFTWARE)
034: DC7 (SOFTWARE)
035: DC8 (SOFTWARE)
036: DC9 (SOFTWARE)
037: EC1 (SOFTWARE)
038: EC2 (SOFTWARE)
039: EC3 (SOFTWARE)
040: EC4 (SOFTWARE)
041: EC5 (SOFTWARE)
042: EC6 (SOFTWARE)
043: EC7 (SOFTWARE)
044: EC8 (SOFTWARE)
045: EC9 (SOFTWARE)
046: FC1 (SOFTWARE)
047: FC2 (SOFTWARE)
048: FC3 (SOFTWARE)
049: FC4 (SOFTWARE)
050: FC5 (SOFTWARE)
051: FC6 (SOFTWARE)
052: FC7 (SOFTWARE)
053: FC8 (SOFTWARE)
054: FC9 (SOFTWARE)
055: GC1 (SOFTWARE)
056: GC2 (SOFTWARE)
057: GC3 (SOFTWARE)
058: GC4 (SOFTWARE)
059: GC5 (SOFTWARE)
060: GC6 (SOFTWARE)
061: GC7 (SOFTWARE)
062: GC8 (SOFTWARE)
063: GC9 (SOFTWARE)
064: HC1 (SOFTWARE)
065: HC2 (SOFTWARE)
066: HC3 (SOFTWARE)
067: HC4 (SOFTWARE)
068: HC5 (SOFTWARE)
069: HC6 (SOFTWARE)
070: HC7 (SOFTWARE)
071: HC8 (SOFTWARE)
072: HC9 (SOFTWARE)
073: IC1 (SOFTWARE)
074: IC2 (SOFTWARE)
075: IC3 (SOFTWARE)
076: IC4 (SOFTWARE)
077: IC5 (SOFTWARE)
078: IC6 (SOFTWARE)
079: IC7 (SOFTWARE)
080: IC8 (SOFTWARE)
081: IC9 (SOFTWARE)
082: JC1 (SOFTWARE)
083: JC2 (SOFTWARE)
084: JC3 (SOFTWARE)
085: JC4 (SOFTWARE)
086: JC5 (SOFTWARE)
087: JC6 (SOFTWARE)
088: JC7 (SOFTWARE)
089: JC8 (SOFTWARE)
090: JC9 (SOFTWARE)
091: KC1 (SOFTWARE)
092: KC2 (SOFTWARE)
093: KC3 (SOFTWARE)
094: KC4 (SOFTWARE)
095: KC5 (SOFTWARE)
096: KC6 (SOFTWARE)
097: KC7 (SOFTWARE)
098: KC8 (SOFTWARE)
099: KC9 (SOFTWARE)
100: LC1 (SOFTWARE)
101: LC2 (SOFTWARE)
102: LC3 (SOFTWARE)
103: LC4 (SOFTWARE)
104: LC5 (SOFTWARE)
105: LC6 (SOFTWARE)
106: LC7 (SOFTWARE)
107: LC8 (SOFTWARE)
108: LC9 (SOFTWARE)
109: MC1 (SOFTWARE)
110: MC2 (SOFTWARE)
111: MC3 (SOFTWARE)
112: MC4 (SOFTWARE)
113: MC5 (SOFTWARE)
114: MC6 (SOFTWARE)
115: MC7 (SOFTWARE)
116: MC8 (SOFTWARE)
117: MC9 (SOFTWARE)
118: NC1 (SOFTWARE)
119: NC2 (SOFTWARE)
120: NC3 (SOFTWARE)
121: NC4 (SOFTWARE)
122: NC5 (SOFTWARE)
123: NC6 (SOFTWARE)
124: NC7 (SOFTWARE)
125: NC8 (SOFTWARE)
126: NC9 (SOFTWARE)
127: OC1 (SOFTWARE)
128: OC2 (SOFTWARE)
129: OC3 (SOFTWARE)
130: OC4 (SOFTWARE)
131: OC5 (SOFTWARE)
132: OC6 (SOFTWARE)
133: OC7 (SOFTWARE)
134: OC8 (SOFTWARE)
135: OC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
GLN A:165 , ASP A:170 , GLU A:189 , HIS A:332 , GLU A:333 , HIS A:337 , ASP A:342 , ALA A:344 , GLU C:354 , ARG C:357
BINDING SITE FOR RESIDUE OEC A 1001
002
AC2
SOFTWARE
HIS A:215 , HIS A:272 , HIS D:214 , HIS D:268
BINDING SITE FOR RESIDUE FE2 D 1002
003
AC3
SOFTWARE
PHE A:119 , TYR A:147 , PRO A:150 , SER A:153 , VAL A:157 , MET A:183 , ILE A:184 , HIS A:198 , ARG A:279 , VAL A:283 , ALA A:286 , ILE A:290 , CLA A:1006 , PHO A:1038 , CLA D:1004 , CLA D:1005 , MGE D:1062
BINDING SITE FOR RESIDUE CLA A 1003
004
AC4
SOFTWARE
THR A:45 , VAL A:49 , MET A:172 , ILE A:176 , MET A:183 , CLA A:1003 , PHO A:1038 , HIS D:197 , MET D:198 , VAL D:201 , GLY D:206 , CLA D:1004 , PQ9 D:1042 , MGE D:1062
BINDING SITE FOR RESIDUE CLA D 1005
005
AC5
SOFTWARE
GLN A:199 , VAL A:202 , ALA A:203 , CLA A:1003 , PQ9 A:1043 , DGD C:1057 , PHE D:157 , VAL D:175 , PHE D:179 , LEU D:182 , CLA D:1004 , PHO D:1039 , BCR D:1050
BINDING SITE FOR RESIDUE CLA A 1006
006
AC6
SOFTWARE
ILE A:36 , PRO A:39 , THR A:40 , PHE A:93 , PRO A:95 , ILE A:96 , TRP A:97 , LEU A:114 , HIS A:118 , LEU A:121 , BCR A:1044 , CLA C:1029 , VAL I:8 , TYR I:9 , VAL I:12 , THR I:13 , PHE I:15 , VAL I:16
BINDING SITE FOR RESIDUE CLA A 1007
007
AC7
SOFTWARE
LEU A:41 , PHE A:48 , ILE A:115 , PHE A:119 , TYR A:126 , GLN A:130 , ALA A:146 , TYR A:147 , PRO A:150 , LEU A:174 , GLY A:175 , ARG A:279 , VAL A:280 , VAL A:283 , CLA A:1003 , LEU D:205 , LEU D:209 , ILE D:213 , TRP D:253 , CLA D:1005
BINDING SITE FOR RESIDUE PHO A 1038
008
AC8
SOFTWARE
PHE A:206 , ALA A:209 , LEU A:210 , ALA A:213 , MET A:214 , PHE A:255 , CLA A:1006 , PQ9 A:1043 , ALA D:41 , ALA D:44 , TRP D:48 , ILE D:114 , GLY D:118 , PHE D:125 , GLN D:129 , ASN D:142 , PHE D:146 , PHE D:173 , GLY D:174 , LEU D:279 , CLA D:1004
BINDING SITE FOR RESIDUE PHO D 1039
009
AC9
SOFTWARE
HIS A:215 , ALA A:251 , HIS A:252 , PHE A:255 , ILE A:259 , SER A:264 , PHE A:265 , LEU A:271 , PHE A:274 , CLA A:1006 , LEU D:45 , CLA D:1004 , PHO D:1039 , MGE D:1059
BINDING SITE FOR RESIDUE PQ9 A 1043
010
BC1
SOFTWARE
VAL A:35 , ILE A:38 , PRO A:39 , ALA A:43 , CYS A:47 , ILE A:50 , TRP A:105 , CLA A:1007 , PHE I:15
BINDING SITE FOR RESIDUE BCR A 1044
011
BC2
SOFTWARE
ARG A:140 , TRP A:142 , TYR A:262 , PHE A:265 , SER A:270 , PHE A:273 , VAL A:281 , TRP C:36 , ARG C:447 , GLU C:456 , LYS C:457 , CLA C:1032 , GLY D:228 , ALA D:229 , SER D:230 , THR D:231 , PHE D:232 , CLA K:1034
BINDING SITE FOR RESIDUE LHG A 1063
012
BC3
SOFTWARE
HIS A:332 , GLU A:333 , LYS D:317
BINDING SITE FOR RESIDUE IOD D 1064
013
BC4
SOFTWARE
ASN A:338 , PHE A:339
BINDING SITE FOR RESIDUE IOD A 1065
014
BC5
SOFTWARE
PHE B:190 , CLA B:1010 , PHE H:41 , BCR H:1049
BINDING SITE FOR RESIDUE CLA B 1009
015
BC6
SOFTWARE
GLY B:189 , PHE B:190 , GLY B:197 , HIS B:201 , ALA B:205 , VAL B:208 , PHE B:246 , PHE B:247 , PHE B:250 , VAL B:251 , CLA B:1009 , CLA B:1011 , CLA B:1013 , CLA B:1016 , DGD B:1058 , LEU D:158 , PHE H:41 , ILE H:45 , LEU H:46 , TYR H:49 , CLA H:1017
BINDING SITE FOR RESIDUE CLA B 1010
016
BC7
SOFTWARE
ARG B:68 , LEU B:69 , LEU B:149 , CYS B:150 , PHE B:153 , HIS B:201 , HIS B:202 , ALA B:244 , PHE B:247 , ALA B:248 , THR B:262 , CLA B:1010 , CLA B:1012 , CLA B:1013 , CLA B:1014 , CLA B:1018 , PHE H:38 , CLA H:1017
BINDING SITE FOR RESIDUE CLA B 1011
017
BC8
SOFTWARE
TRP B:33 , PHE B:61 , PHE B:65 , LEU B:149 , ALA B:248 , ALA B:249 , VAL B:252 , PHE B:451 , HIS B:455 , CLA B:1011 , CLA B:1013 , CLA B:1015 , CLA B:1020 , CLA B:1021 , CLA B:1023
BINDING SITE FOR RESIDUE CLA B 1012
018
BC9
SOFTWARE
THR B:27 , VAL B:30 , ALA B:31 , TRP B:33 , ALA B:34 , VAL B:62 , PHE B:65 , LEU B:69 , VAL B:96 , HIS B:100 , LEU B:103 , GLY B:147 , CLA B:1010 , CLA B:1011 , CLA B:1012 , CLA B:1014 , CLA B:1018
BINDING SITE FOR RESIDUE CLA B 1013
019
CC1
SOFTWARE
LEU B:69 , VAL B:71 , TRP B:91 , ALA B:99 , HIS B:100 , LEU B:103 , LEU B:149 , GLY B:152 , PHE B:153 , HIS B:157 , PHE B:162 , PRO B:164 , CLA B:1011 , CLA B:1013 , BCR B:1048
BINDING SITE FOR RESIDUE CLA B 1014
020
CC2
SOFTWARE
TRP B:33 , MET B:37 , TYR B:40 , GLY B:59 , PHE B:61 , LEU B:324 , THR B:327 , TRP B:450 , CLA B:1012 , CLA B:1021 , BCR B:1045 , BCR B:1047 , MGE B:1060 , LEU L:27 , BCR t:1046
BINDING SITE FOR RESIDUE CLA B 1015
021
CC3
SOFTWARE
SER B:240 , ALA B:243 , PHE B:246 , PHE B:463 , HIS B:466 , GLY B:470 , THR B:473 , LEU B:474 , CLA B:1010 , CLA B:1018 , LEU D:89 , PHE D:120 , ILE D:123 , MET D:126 , LEU D:127 , PHE D:130 , CLA D:1008 , CLA H:1017
BINDING SITE FOR RESIDUE CLA B 1016
022
CC4
SOFTWARE
PHE B:139 , HIS B:216 , PRO B:221 , PRO B:222 , LEU B:225 , LEU B:229 , CLA B:1010 , CLA B:1011 , CLA B:1016 , CLA B:1018 , THR H:27 , THR H:28 , LEU H:30 , MET H:31 , PHE H:34 , MET H:35 , LEU H:46 , BCR H:1049
BINDING SITE FOR RESIDUE CLA H 1017
023
CC5
SOFTWARE
HIS B:23 , LEU B:135 , PRO B:136 , PHE B:139 , HIS B:142 , LEU B:229 , MET B:231 , VAL B:237 , SER B:240 , SER B:241 , CLA B:1011 , CLA B:1013 , CLA B:1016 , CLA B:1020 , CLA B:1023 , CLA H:1017
BINDING SITE FOR RESIDUE CLA B 1018
024
CC6
SOFTWARE
TRP B:5 , TYR B:6 , ARG B:7 , HIS B:9 , THR B:10 , ILE B:242 , LEU B:461 , PHE B:462 , PHE B:464 , GLY B:465 , TRP B:468 , HIS B:469 , ARG B:472 , CLA B:1020 , CLA B:1021 , MGE B:1060 , MGE L:1061
BINDING SITE FOR RESIDUE CLA B 1019
025
CC7
SOFTWARE
HIS B:9 , LEU B:12 , HIS B:23 , HIS B:26 , THR B:27 , GLU B:235 , VAL B:237 , LEU B:238 , SER B:241 , CLA B:1012 , CLA B:1018 , CLA B:1019 , CLA B:1021 , CLA B:1023
BINDING SITE FOR RESIDUE CLA B 1020
026
CC8
SOFTWARE
HIS B:9 , HIS B:26 , VAL B:30 , PHE B:462 , CLA B:1012 , CLA B:1015 , CLA B:1019 , CLA B:1020 , CLA B:1022 , BCR B:1047 , MGE B:1060
BINDING SITE FOR RESIDUE CLA B 1021
027
CC9
SOFTWARE
VAL B:8 , HIS B:9 , LEU B:29 , CLA B:1021 , BCR B:1045 , ARG L:7 , VAL L:10 , PHE M:21 , ILE M:24 , LEU M:25 , SER m:5036
BINDING SITE FOR RESIDUE CLA B 1022
028
DC1
SOFTWARE
ILE B:20 , HIS B:23 , LEU B:24 , MET B:138 , HIS B:142 , LEU B:145 , CLA B:1012 , CLA B:1018 , CLA B:1020 , CLA B:1024 , BCR B:1048 , ASN H:15
BINDING SITE FOR RESIDUE CLA B 1023
029
DC2
SOFTWARE
ILE B:20 , LEU B:24 , LEU B:107 , TRP B:113 , HIS B:114 , LEU B:120 , PHE B:123 , CLA B:1023 , BCR B:1048 , THR H:5 , LEU H:7 , GLY H:8
BINDING SITE FOR RESIDUE CLA B 1024
030
DC3
SOFTWARE
MET B:25 , LEU B:29 , PHE B:108 , CLA B:1015 , CLA B:1022 , BCR B:1047
BINDING SITE FOR RESIDUE BCR B 1045
031
DC4
SOFTWARE
LEU B:29 , GLY B:32 , TRP B:33 , SER B:36 , ILE B:101 , GLY B:105 , CLA B:1015 , CLA B:1021 , BCR B:1045 , BCR t:1046
BINDING SITE FOR RESIDUE BCR B 1047
032
DC5
SOFTWARE
LEU B:106 , ALA B:110 , CLA B:1014 , CLA B:1023 , CLA B:1024 , PHE t:5018 , PHE t:5022
BINDING SITE FOR RESIDUE BCR B 1048
033
DC6
SOFTWARE
CYS B:112 , TRP B:115
BINDING SITE FOR RESIDUE IOD B 1067
034
DC7
SOFTWARE
LEU C:95 , LEU C:168 , GLY C:171 , ALA C:172 , HIS C:237 , ILE C:240 , MET C:282 , CLA C:1026 , CLA C:1031 , BCR C:1054
BINDING SITE FOR RESIDUE CLA C 1025
035
DC8
SOFTWARE
TRP C:63 , HIS C:91 , LEU C:279 , GLY C:283 , ALA C:286 , TYR C:297 , HIS C:430 , LEU C:433 , ALA C:434 , PHE C:437 , CLA C:1025 , CLA C:1027 , CLA C:1028 , CLA C:1033 , CLA K:1034
BINDING SITE FOR RESIDUE CLA C 1026
036
DC9
SOFTWARE
ILE C:60 , LEU C:88 , VAL C:117 , HIS C:118 , SER C:121 , CLA C:1026 , CLA C:1036 , BCR Z:1053
BINDING SITE FOR RESIDUE CLA C 1027
037
EC1
SOFTWARE
TRP C:63 , MET C:67 , PHE C:70 , GLY C:85 , ILE C:87 , SER C:406 , TRP C:425 , SER C:429 , CLA C:1026 , DGD C:1056 , DGD C:1057 , PRO K:26 , CLA K:1034
BINDING SITE FOR RESIDUE CLA C 1028
038
EC2
SOFTWARE
PHE A:33 , ILE A:36 , TRP A:131 , CLA A:1007 , TYR C:274 , GLY C:277 , MET C:281 , HIS C:441 , LEU C:442 , ARG C:449 , CLA C:1031 , BCR C:1054 , PHE I:23
BINDING SITE FOR RESIDUE CLA C 1029
039
EC3
SOFTWARE
LEU C:161 , LEU C:165 , ILE C:243 , GLY C:247 , TRP C:250 , HIS C:251 , PHE C:257 , PHE C:264 , CLA C:1031 , BCR C:1054
BINDING SITE FOR RESIDUE CLA C 1030
040
EC4
SOFTWARE
MET C:157 , ILE C:160 , LEU C:161 , HIS C:164 , LEU C:165 , LEU C:168 , TYR C:271 , TYR C:274 , SER C:275 , CLA C:1025 , CLA C:1029 , CLA C:1030 , CLA C:1033 , BCR C:1054
BINDING SITE FOR RESIDUE CLA C 1031
041
EC5
SOFTWARE
LHG A:1063 , TRP C:36 , ASN C:39 , LEU C:272 , LEU C:276 , PHE C:436 , PHE C:437 , VAL C:439 , GLY C:440 , TRP C:443 , HIS C:444 , ARG C:447 , CLA C:1033 , CLA C:1035 , DGD C:1056 , PHE K:33 , PHE K:37 , CLA K:1034
BINDING SITE FOR RESIDUE CLA C 1032
042
EC6
SOFTWARE
ASN C:39 , ILE C:43 , HIS C:53 , HIS C:56 , TRP C:151 , ILE C:160 , HIS C:164 , GLY C:268 , GLU C:269 , LEU C:272 , SER C:275 , CLA C:1026 , CLA C:1031 , CLA C:1032 , CLA C:1036 , CLA K:1034
BINDING SITE FOR RESIDUE CLA C 1033
043
EC7
SOFTWARE
LHG A:1063 , HIS C:56 , LEU C:59 , ILE C:60 , CLA C:1026 , CLA C:1028 , CLA C:1032 , CLA C:1033 , CLA C:1035 , PRO K:29 , VAL K:30 , PHE K:33
BINDING SITE FOR RESIDUE CLA K 1034
044
EC8
SOFTWARE
TRP C:35 , GLY C:38 , ASN C:39 , ARG C:41 , LEU C:42 , LYS C:48 , LEU C:49 , ALA C:52 , VAL C:130 , CLA C:1032 , BCR C:1052 , PHE K:37 , GLN K:40 , CLA K:1034 , BCR K:1051 , LEU Y:39 , ASN Y:45 , VAL Z:20 , VAL Z:23
BINDING SITE FOR RESIDUE CLA C 1035
045
EC9
SOFTWARE
HIS C:53 , ALA C:57 , LEU C:125 , PHE C:147 , GLY C:148 , ILE C:160 , PHE C:163 , HIS C:164 , VAL C:167 , ILE C:170 , CLA C:1027 , CLA C:1033 , CLA C:1037 , BCR Z:1053
BINDING SITE FOR RESIDUE CLA C 1036
046
FC1
SOFTWARE
LEU C:50 , VAL C:124 , GLY C:128 , TYR C:131 , HIS C:132 , PRO C:137 , TYR C:143 , PHE C:146 , CLA C:1036 , BCR Z:1053
BINDING SITE FOR RESIDUE CLA C 1037
047
FC2
SOFTWARE
ALA C:55 , PHE C:62 , LEU C:119 , SER C:122 , ALA C:123 , GLY C:126 , CLA C:1035 , PHE K:32 , BCR K:1051 , LEU Z:9 , LEU Z:12
BINDING SITE FOR RESIDUE BCR C 1052
048
FC3
SOFTWARE
VAL C:116 , VAL C:117 , SER C:121 , CLA C:1027 , CLA C:1036 , CLA C:1037 , VAL Z:54 , GLY Z:55 , ASN Z:58
BINDING SITE FOR RESIDUE BCR Z 1053
049
FC4
SOFTWARE
ILE C:209 , ILE C:224 , CLA C:1025 , CLA C:1029 , CLA C:1030 , CLA C:1031
BINDING SITE FOR RESIDUE BCR C 1054
050
FC5
SOFTWARE
LEU A:91 , LEU A:121 , LEU A:151 , PHE A:155 , LEU A:159 , ILE A:163 , PRO C:217 , PHE C:218 , GLY C:219 , GLY C:220 , GLY C:222 , VAL C:225 , SER C:226 , ASN C:228 , PHE C:284 , CYS C:288 , PHE C:292 , ASN C:293 , ASN C:294 , ASP C:360 , ARG C:362
BINDING SITE FOR RESIDUE DGD C 1055
051
FC6
SOFTWARE
PHE A:197 , LEU A:200 , PHE A:285 , LEU A:297 , GLU C:83 , GLY C:85 , SER C:406 , ASN C:418 , TRP C:425 , SER C:429 , CLA C:1028 , CLA C:1032 , DGD C:1057 , PHE J:29 , TYR J:33
BINDING SITE FOR RESIDUE DGD C 1056
052
FC7
SOFTWARE
PRO A:196 , GLN A:199 , LEU A:200 , TRP A:278 , SER A:305 , CLA A:1006 , ASN C:405 , ASN C:415 , SER C:416 , ASN C:418 , CLA C:1028 , DGD C:1056 , MGE D:1059 , PHE J:29 , ALA J:32 , TYR J:33 , GLY J:37 , SER J:38 , SER J:39 , GLN V:60
BINDING SITE FOR RESIDUE DGD C 1057
053
FC8
SOFTWARE
MET A:183 , PHE A:206 , CLA A:1003 , CLA A:1006 , PQ9 A:1043 , LEU D:45 , TRP D:48 , LEU D:122 , PRO D:149 , VAL D:152 , PHE D:153 , VAL D:156 , PHE D:181 , LEU D:182 , PHE D:185 , GLN D:186 , TRP D:191 , THR D:192 , HIS D:197 , GLY D:200 , VAL D:201 , VAL D:204 , LEU D:279 , SER D:282 , ALA D:283 , VAL D:286 , CLA D:1005 , PHO D:1039 , MGE D:1059
BINDING SITE FOR RESIDUE CLA D 1004
054
FC9
SOFTWARE
CLA B:1016 , PRO D:39 , CYS D:40 , LEU D:43 , LEU D:90 , LEU D:91 , LEU D:92 , TRP D:93 , PHE D:113 , HIS D:117 , MET H:35 , VAL H:40 , VAL X:29
BINDING SITE FOR RESIDUE CLA D 1008
055
GC1
SOFTWARE
MET D:199 , ALA D:202 , LEU D:209 , LEU D:210 , ILE D:213 , THR D:217 , ALA D:249 , TRP D:253 , ALA D:260 , PHE D:261 , LEU D:267 , PHE D:270 , VAL D:274 , CLA D:1005 , MGE D:1062 , VAL L:26 , LEU L:27 , LEU L:29 , LEU L:30 , MGE L:1061
BINDING SITE FOR RESIDUE PQ9 D 1042
056
GC2
SOFTWARE
CLA A:1006 , LEU D:43 , GLY D:46 , GLY D:47 , LEU D:49 , THR D:50 , PHE D:113 , MGE D:1059 , THR F:30 , PHE F:33 , LEU F:34 , VAL J:21
BINDING SITE FOR RESIDUE BCR D 1050
057
GC3
SOFTWARE
PQ9 A:1043 , DGD C:1057 , LEU D:49 , TYR D:67 , GLY D:70 , CYS D:71 , ASN D:72 , PHE D:73 , CLA D:1004 , BCR D:1050 , MET F:40 , GLN F:41 , PHE J:28 , GLY J:31 , ALA J:32 , GLY J:35 , LEU J:36
BINDING SITE FOR RESIDUE MGE D 1059
058
GC4
SOFTWARE
ASN A:234 , TRP B:5 , TYR B:6 , ARG B:7 , PHE B:464 , TRP B:468 , CLA B:1015 , CLA B:1019 , CLA B:1021 , TYR D:141 , ARG D:265 , PHE D:269 , VAL D:276 , TRP D:280 , LEU L:23 , MGE L:1061
BINDING SITE FOR RESIDUE MGE B 1060
059
GC5
SOFTWARE
CLA A:1003 , PHE D:257 , ILE D:259 , ALA D:260 , PHE D:261 , SER D:262 , TRP D:266 , CLA D:1005 , PQ9 D:1042 , ASN L:13 , THR L:15 , LEU L:19 , LEU L:22 , VAL L:26 , PHE T:17 , ALA T:20 , ILE T:21 , GLU T:25
BINDING SITE FOR RESIDUE MGE D 1062
060
GC6
SOFTWARE
PHE B:362 , TYR D:160 , GLN D:164
BINDING SITE FOR RESIDUE IOD D 1068
061
GC7
SOFTWARE
ILE E:13 , HIS E:23 , THR E:26 , ILE E:27 , LEU E:30 , ILE F:15 , PHE F:16 , ARG F:19 , TRP F:20 , HIS F:24 , ALA F:27 , UNK N:11 , UNK N:15
BINDING SITE FOR RESIDUE HEM F 1040
062
GC8
SOFTWARE
CLA B:1009 , PHE H:34 , MET H:35 , LEU H:37 , PHE H:38 , PHE H:41 , CLA H:1017 , LEU X:16 , PHE X:20
BINDING SITE FOR RESIDUE BCR H 1049
063
GC9
SOFTWARE
TYR B:193 , PHE B:250 , TYR B:258 , TYR B:273 , GLN B:274 , THR B:452 , ALA B:456 , LEU B:460 , PHE B:463 , CLA B:1010 , GLY D:86 , HIS D:87 , LEU D:116 , VAL D:154 , ILE D:159 , LEU D:162 , SER D:165 , VAL D:287 , LEU H:46 , TYR H:49 , ASN H:50 , VAL H:60 , SER H:61 , TRP H:62
BINDING SITE FOR RESIDUE DGD B 1058
064
HC1
SOFTWARE
SER A:232 , ASN A:234 , TRP B:5 , TYR B:6 , CLA B:1019 , MGE B:1060 , TRP D:266 , PHE D:273 , PQ9 D:1042 , GLU L:11 , ASN L:13 , SER L:16 , GLY L:20 , LEU L:22 , VAL L:26 , VAL M:17 , PRO M:18 , PHE M:21 , LEU M:22
BINDING SITE FOR RESIDUE MGE L 1061
065
HC2
SOFTWARE
PHE T:8 , CYS T:12
BINDING SITE FOR RESIDUE IOD T 1066
066
HC3
SOFTWARE
PHE T:8 , ALA T:11 , ILE T:14 , ALA T:15 , PHE T:17 , PHE T:18 , ILE T:21 , SER b:5036 , CLA b:6015 , BCR b:6047
BINDING SITE FOR RESIDUE BCR T 6046
067
HC4
SOFTWARE
ALA V:62 , CYS V:66 , HIS V:67 , THR V:74 , LEU V:78 , LEU V:85 , TYR V:101 , TYR V:108 , ILE V:114 , HIS V:118 , ILE V:145
BINDING SITE FOR RESIDUE HEM V 1041
068
HC5
SOFTWARE
CLA C:1035 , BCR C:1052 , ALA J:14 , THR J:15 , GLY J:18 , MET J:19 , ILE K:28 , LEU K:31 , ALA K:34 , LEU K:35 , PHE K:37 , ILE Y:28 , GLY Y:29 , GLY Y:32
BINDING SITE FOR RESIDUE BCR K 1051
069
HC6
SOFTWARE
GLN a:5165 , ASP a:5170 , GLU a:5189 , HIS a:5332 , GLU a:5333 , HIS a:5337 , ASP a:5342 , ALA a:5344 , GLU c:5354 , ARG c:5357
BINDING SITE FOR RESIDUE OEC A 6001
070
HC7
SOFTWARE
HIS a:5215 , HIS a:5272 , HIS d:5214 , HIS d:5268
BINDING SITE FOR RESIDUE FE2 A 6002
071
HC8
SOFTWARE
PHE a:5119 , TYR a:5147 , PRO a:5150 , SER a:5153 , VAL a:5157 , MET a:5183 , ILE a:5184 , HIS a:5198 , ARG a:5279 , VAL a:5283 , ALA a:5286 , ILE a:5290 , CLA a:6006 , PHO a:6038 , CLA d:6004 , CLA d:6005 , MGE d:6062
BINDING SITE FOR RESIDUE CLA A 6003
072
HC9
SOFTWARE
THR a:5045 , VAL a:5049 , MET a:5172 , ILE a:5176 , MET a:5183 , CLA a:6003 , PHO a:6038 , HIS d:5197 , MET d:5198 , VAL d:5201 , GLY d:5206 , CLA d:6004 , PQ9 d:6042 , MGE d:6062
BINDING SITE FOR RESIDUE CLA D 6005
073
IC1
SOFTWARE
GLN a:5199 , VAL a:5202 , ALA a:5203 , CLA a:6003 , PQ9 a:6043 , DGD c:6057 , PHE d:5157 , VAL d:5175 , PHE d:5179 , LEU d:5182 , CLA d:6004 , PHO d:6039 , BCR d:6050
BINDING SITE FOR RESIDUE CLA A 6006
074
IC2
SOFTWARE
ILE a:5036 , PRO a:5039 , THR a:5040 , PHE a:5093 , PRO a:5095 , ILE a:5096 , TRP a:5097 , LEU a:5114 , HIS a:5118 , LEU a:5121 , BCR a:6044 , CLA c:6029 , VAL i:5008 , TYR i:5009 , VAL i:5012 , THR i:5013 , PHE i:5015 , VAL i:5016
BINDING SITE FOR RESIDUE CLA A 6007
075
IC3
SOFTWARE
LEU a:5041 , PHE a:5048 , ILE a:5115 , PHE a:5119 , TYR a:5126 , GLN a:5130 , ALA a:5146 , TYR a:5147 , PRO a:5150 , LEU a:5174 , GLY a:5175 , ARG a:5279 , VAL a:5280 , VAL a:5283 , CLA a:6003 , LEU d:5205 , LEU d:5209 , ILE d:5213 , TRP d:5253 , CLA d:6005
BINDING SITE FOR RESIDUE PHO A 6038
076
IC4
SOFTWARE
PHE a:5206 , ALA a:5209 , LEU a:5210 , ALA a:5213 , MET a:5214 , PHE a:5255 , CLA a:6006 , PQ9 a:6043 , ALA d:5041 , ALA d:5044 , TRP d:5048 , ILE d:5114 , GLY d:5118 , PHE d:5125 , GLN d:5129 , ASN d:5142 , PHE d:5146 , PHE d:5173 , GLY d:5174 , LEU d:5279 , CLA d:6004
BINDING SITE FOR RESIDUE PHO D 6039
077
IC5
SOFTWARE
HIS a:5215 , ALA a:5251 , HIS a:5252 , PHE a:5255 , ILE a:5259 , SER a:5264 , PHE a:5265 , LEU a:5271 , PHE a:5274 , CLA a:6006 , LEU d:5045 , CLA d:6004 , PHO d:6039 , MGE d:6059
BINDING SITE FOR RESIDUE PQ9 A 6043
078
IC6
SOFTWARE
VAL a:5035 , ILE a:5038 , PRO a:5039 , ALA a:5043 , CYS a:5047 , ILE a:5050 , TRP a:5105 , CLA a:6007 , PHE i:5015
BINDING SITE FOR RESIDUE BCR A 6044
079
IC7
SOFTWARE
ARG a:5140 , TRP a:5142 , TYR a:5262 , PHE a:5265 , SER a:5270 , PHE a:5273 , VAL a:5281 , TRP c:5036 , ARG c:5447 , GLU c:5456 , LYS c:5457 , CLA c:6032 , GLY d:5228 , ALA d:5229 , SER d:5230 , THR d:5231 , PHE d:5232 , CLA k:6034
BINDING SITE FOR RESIDUE LHG A 6063
080
IC8
SOFTWARE
HIS a:5332 , GLU a:5333 , LYS d:5317
BINDING SITE FOR RESIDUE IOD D 6064
081
IC9
SOFTWARE
PHE b:5190 , CLA b:6010 , PHE h:5041 , BCR h:6049
BINDING SITE FOR RESIDUE CLA B 6009
082
JC1
SOFTWARE
GLY b:5189 , PHE b:5190 , GLY b:5197 , HIS b:5201 , ALA b:5205 , VAL b:5208 , PHE b:5246 , PHE b:5247 , PHE b:5250 , VAL b:5251 , CLA b:6009 , CLA b:6011 , CLA b:6013 , CLA b:6016 , DGD b:6058 , LEU d:5158 , PHE h:5041 , ILE h:5045 , LEU h:5046 , TYR h:5049 , CLA h:6017
BINDING SITE FOR RESIDUE CLA B 6010
083
JC2
SOFTWARE
ARG b:5068 , LEU b:5069 , LEU b:5149 , CYS b:5150 , PHE b:5153 , HIS b:5201 , HIS b:5202 , ALA b:5244 , PHE b:5247 , ALA b:5248 , THR b:5262 , CLA b:6010 , CLA b:6012 , CLA b:6013 , CLA b:6014 , CLA b:6018 , PHE h:5038 , CLA h:6017
BINDING SITE FOR RESIDUE CLA B 6011
084
JC3
SOFTWARE
TRP b:5033 , PHE b:5061 , PHE b:5065 , LEU b:5149 , ALA b:5248 , ALA b:5249 , VAL b:5252 , PHE b:5451 , HIS b:5455 , CLA b:6011 , CLA b:6013 , CLA b:6015 , CLA b:6020 , CLA b:6021 , CLA b:6023
BINDING SITE FOR RESIDUE CLA B 6012
085
JC4
SOFTWARE
THR b:5027 , VAL b:5030 , ALA b:5031 , TRP b:5033 , ALA b:5034 , VAL b:5062 , PHE b:5065 , LEU b:5069 , VAL b:5096 , HIS b:5100 , LEU b:5103 , GLY b:5147 , CLA b:6010 , CLA b:6011 , CLA b:6012 , CLA b:6014 , CLA b:6018
BINDING SITE FOR RESIDUE CLA B 6013
086
JC5
SOFTWARE
BCR T:6048 , LEU b:5069 , VAL b:5071 , TRP b:5091 , ALA b:5099 , HIS b:5100 , LEU b:5103 , LEU b:5149 , GLY b:5152 , PHE b:5153 , HIS b:5157 , PHE b:5162 , PRO b:5164 , CLA b:6011 , CLA b:6013
BINDING SITE FOR RESIDUE CLA B 6014
087
JC6
SOFTWARE
BCR T:6046 , TRP b:5033 , MET b:5037 , TYR b:5040 , GLY b:5059 , PHE b:5061 , LEU b:5324 , THR b:5327 , TRP b:5450 , CLA b:6012 , CLA b:6021 , BCR b:6045 , BCR b:6047 , MGE b:6060 , LEU l:5027
BINDING SITE FOR RESIDUE CLA B 6015
088
JC7
SOFTWARE
SER b:5240 , ALA b:5243 , PHE b:5246 , PHE b:5463 , HIS b:5466 , GLY b:5470 , THR b:5473 , LEU b:5474 , CLA b:6010 , CLA b:6018 , LEU d:5089 , PHE d:5120 , ILE d:5123 , MET d:5126 , LEU d:5127 , PHE d:5130 , CLA d:6008 , CLA h:6017
BINDING SITE FOR RESIDUE CLA B 6016
089
JC8
SOFTWARE
PHE b:5139 , HIS b:5216 , PRO b:5221 , PRO b:5222 , LEU b:5225 , LEU b:5229 , CLA b:6010 , CLA b:6011 , CLA b:6016 , CLA b:6018 , THR h:5027 , THR h:5028 , LEU h:5030 , MET h:5031 , PHE h:5034 , MET h:5035 , LEU h:5046 , BCR h:6049
BINDING SITE FOR RESIDUE CLA H 6017
090
JC9
SOFTWARE
HIS b:5023 , LEU b:5135 , PRO b:5136 , PHE b:5139 , HIS b:5142 , LEU b:5229 , MET b:5231 , VAL b:5237 , SER b:5240 , SER b:5241 , CLA b:6011 , CLA b:6013 , CLA b:6016 , CLA b:6020 , CLA b:6023 , CLA h:6017
BINDING SITE FOR RESIDUE CLA B 6018
091
KC1
SOFTWARE
TRP b:5005 , TYR b:5006 , ARG b:5007 , HIS b:5009 , THR b:5010 , ILE b:5242 , LEU b:5461 , PHE b:5462 , PHE b:5464 , GLY b:5465 , TRP b:5468 , HIS b:5469 , ARG b:5472 , CLA b:6020 , CLA b:6021 , MGE b:6060 , MGE l:6061
BINDING SITE FOR RESIDUE CLA B 6019
092
KC2
SOFTWARE
HIS b:5009 , LEU b:5012 , HIS b:5023 , HIS b:5026 , THR b:5027 , GLU b:5235 , VAL b:5237 , LEU b:5238 , SER b:5241 , CLA b:6012 , CLA b:6018 , CLA b:6019 , CLA b:6021 , CLA b:6023
BINDING SITE FOR RESIDUE CLA B 6020
093
KC3
SOFTWARE
HIS b:5009 , HIS b:5026 , VAL b:5030 , PHE b:5462 , CLA b:6012 , CLA b:6015 , CLA b:6019 , CLA b:6020 , CLA b:6022 , BCR b:6047 , MGE b:6060
BINDING SITE FOR RESIDUE CLA B 6021
094
KC4
SOFTWARE
SER M:36 , VAL b:5008 , HIS b:5009 , LEU b:5029 , CLA b:6021 , BCR b:6045 , ARG l:5007 , VAL l:5010 , PHE m:5021 , ILE m:5024 , LEU m:5025
BINDING SITE FOR RESIDUE CLA B 6022
095
KC5
SOFTWARE
BCR T:6048 , ILE b:5020 , HIS b:5023 , LEU b:5024 , MET b:5138 , HIS b:5142 , LEU b:5145 , CLA b:6012 , CLA b:6018 , CLA b:6020 , CLA b:6024 , ASN h:5015
BINDING SITE FOR RESIDUE CLA B 6023
096
KC6
SOFTWARE
BCR T:6048 , ILE b:5020 , LEU b:5024 , LEU b:5107 , TRP b:5113 , HIS b:5114 , LEU b:5120 , PHE b:5123 , CLA b:6023 , THR h:5005 , LEU h:5007 , GLY h:5008
BINDING SITE FOR RESIDUE CLA B 6024
097
KC7
SOFTWARE
PHE T:19 , MET b:5025 , LEU b:5029 , PHE b:5108 , CLA b:6015 , CLA b:6022 , BCR b:6047
BINDING SITE FOR RESIDUE BCR B 6045
098
KC8
SOFTWARE
BCR T:6046 , LEU b:5029 , GLY b:5032 , TRP b:5033 , SER b:5036 , ILE b:5101 , GLY b:5105 , CLA b:6015 , CLA b:6021 , BCR b:6045
BINDING SITE FOR RESIDUE BCR B 6047
099
KC9
SOFTWARE
PHE T:18 , PHE T:22 , LEU b:5106 , ALA b:5110 , CLA b:6014 , CLA b:6023 , CLA b:6024
BINDING SITE FOR RESIDUE BCR T 6048
100
LC1
SOFTWARE
CYS b:5112
BINDING SITE FOR RESIDUE IOD B 6067
101
LC2
SOFTWARE
LEU c:5095 , LEU c:5168 , GLY c:5171 , ALA c:5172 , HIS c:5237 , ILE c:5240 , MET c:5282 , CLA c:6026 , CLA c:6031 , BCR c:6054
BINDING SITE FOR RESIDUE CLA C 6025
102
LC3
SOFTWARE
TRP c:5063 , HIS c:5091 , LEU c:5279 , GLY c:5283 , ALA c:5286 , TYR c:5297 , HIS c:5430 , LEU c:5433 , ALA c:5434 , PHE c:5437 , CLA c:6025 , CLA c:6027 , CLA c:6028 , CLA c:6033 , CLA k:6034
BINDING SITE FOR RESIDUE CLA C 6026
103
LC4
SOFTWARE
ILE c:5060 , LEU c:5088 , VAL c:5117 , HIS c:5118 , SER c:5121 , CLA c:6026 , CLA c:6036 , BCR z:6053
BINDING SITE FOR RESIDUE CLA C 6027
104
LC5
SOFTWARE
TRP c:5063 , MET c:5067 , PHE c:5070 , GLY c:5085 , ILE c:5087 , SER c:5406 , TRP c:5425 , SER c:5429 , CLA c:6026 , DGD c:6056 , DGD c:6057 , PRO k:5026 , CLA k:6034
BINDING SITE FOR RESIDUE CLA C 6028
105
LC6
SOFTWARE
PHE a:5033 , ILE a:5036 , TRP a:5131 , CLA a:6007 , TYR c:5274 , GLY c:5277 , MET c:5281 , HIS c:5441 , LEU c:5442 , ARG c:5449 , CLA c:6031 , BCR c:6054 , PHE i:5023
BINDING SITE FOR RESIDUE CLA C 6029
106
LC7
SOFTWARE
LEU c:5161 , LEU c:5165 , ILE c:5243 , GLY c:5247 , TRP c:5250 , HIS c:5251 , PHE c:5257 , PHE c:5264 , CLA c:6031 , BCR c:6054
BINDING SITE FOR RESIDUE CLA C 6030
107
LC8
SOFTWARE
MET c:5157 , ILE c:5160 , LEU c:5161 , HIS c:5164 , LEU c:5165 , LEU c:5168 , TYR c:5271 , TYR c:5274 , SER c:5275 , CLA c:6025 , CLA c:6029 , CLA c:6030 , CLA c:6033 , BCR c:6054
BINDING SITE FOR RESIDUE CLA C 6031
108
LC9
SOFTWARE
LHG a:6063 , TRP c:5036 , ASN c:5039 , LEU c:5272 , LEU c:5276 , PHE c:5436 , PHE c:5437 , VAL c:5439 , GLY c:5440 , TRP c:5443 , HIS c:5444 , ARG c:5447 , CLA c:6033 , CLA c:6035 , DGD c:6056 , PHE k:5033 , PHE k:5037 , CLA k:6034
BINDING SITE FOR RESIDUE CLA C 6032
109
MC1
SOFTWARE
ASN c:5039 , ILE c:5043 , HIS c:5053 , HIS c:5056 , TRP c:5151 , ILE c:5160 , HIS c:5164 , GLY c:5268 , GLU c:5269 , LEU c:5272 , SER c:5275 , CLA c:6026 , CLA c:6031 , CLA c:6032 , CLA c:6036 , CLA k:6034
BINDING SITE FOR RESIDUE CLA C 6033
110
MC2
SOFTWARE
LHG a:6063 , HIS c:5056 , LEU c:5059 , ILE c:5060 , CLA c:6026 , CLA c:6028 , CLA c:6032 , CLA c:6033 , CLA c:6035 , PRO k:5029 , VAL k:5030 , PHE k:5033
BINDING SITE FOR RESIDUE CLA K 6034
111
MC3
SOFTWARE
TRP c:5035 , GLY c:5038 , ASN c:5039 , ARG c:5041 , LEU c:5042 , LYS c:5048 , LEU c:5049 , ALA c:5052 , VAL c:5130 , CLA c:6032 , PHE k:5037 , GLN k:5040 , CLA k:6034 , BCR k:6051 , BCR k:6052 , LEU y:5039 , ASN y:5045 , VAL z:5020 , VAL z:5023
BINDING SITE FOR RESIDUE CLA C 6035
112
MC4
SOFTWARE
HIS c:5053 , ALA c:5057 , LEU c:5125 , PHE c:5147 , GLY c:5148 , ILE c:5160 , PHE c:5163 , HIS c:5164 , VAL c:5167 , ILE c:5170 , CLA c:6027 , CLA c:6033 , CLA c:6037 , BCR z:6053
BINDING SITE FOR RESIDUE CLA C 6036
113
MC5
SOFTWARE
LEU c:5050 , VAL c:5124 , GLY c:5128 , TYR c:5131 , HIS c:5132 , PRO c:5137 , TYR c:5143 , PHE c:5146 , CLA c:6036 , BCR z:6053
BINDING SITE FOR RESIDUE CLA C 6037
114
MC6
SOFTWARE
ALA c:5055 , PHE c:5062 , LEU c:5119 , SER c:5122 , ALA c:5123 , GLY c:5126 , CLA c:6035 , PHE k:5032 , BCR k:6051 , LEU z:5009 , LEU z:5012
BINDING SITE FOR RESIDUE BCR K 6052
115
MC7
SOFTWARE
VAL c:5116 , VAL c:5117 , SER c:5121 , CLA c:6027 , CLA c:6036 , CLA c:6037 , VAL z:5054 , GLY z:5055 , ASN z:5058
BINDING SITE FOR RESIDUE BCR Z 6053
116
MC8
SOFTWARE
ILE c:5209 , ILE c:5224 , CLA c:6025 , CLA c:6029 , CLA c:6030 , CLA c:6031
BINDING SITE FOR RESIDUE BCR C 6054
117
MC9
SOFTWARE
LEU a:5091 , LEU a:5121 , LEU a:5151 , PHE a:5155 , LEU a:5159 , ILE a:5163 , PRO c:5217 , PHE c:5218 , GLY c:5219 , GLY c:5220 , GLY c:5222 , VAL c:5225 , SER c:5226 , ASN c:5228 , PHE c:5284 , CYS c:5288 , PHE c:5292 , ASN c:5293 , ASN c:5294 , ASP c:5360 , ARG c:5362
BINDING SITE FOR RESIDUE DGD C 6055
118
NC1
SOFTWARE
PHE a:5197 , LEU a:5200 , PHE a:5285 , LEU a:5297 , GLU c:5083 , GLY c:5085 , SER c:5406 , ASN c:5418 , TRP c:5425 , SER c:5429 , CLA c:6028 , CLA c:6032 , DGD c:6057 , PHE j:5029 , TYR j:5033
BINDING SITE FOR RESIDUE DGD C 6056
119
NC2
SOFTWARE
PRO a:5196 , GLN a:5199 , LEU a:5200 , TRP a:5278 , SER a:5305 , CLA a:6006 , ASN c:5405 , ASN c:5415 , SER c:5416 , ASN c:5418 , CLA c:6028 , DGD c:6056 , MGE d:6059 , PHE j:5029 , ALA j:5032 , TYR j:5033 , GLY j:5037 , SER j:5038 , SER j:5039 , GLN v:5060
BINDING SITE FOR RESIDUE DGD C 6057
120
NC3
SOFTWARE
MET a:5183 , PHE a:5206 , CLA a:6003 , CLA a:6006 , PQ9 a:6043 , LEU d:5045 , TRP d:5048 , LEU d:5122 , PRO d:5149 , VAL d:5152 , PHE d:5153 , VAL d:5156 , PHE d:5181 , LEU d:5182 , PHE d:5185 , GLN d:5186 , TRP d:5191 , THR d:5192 , HIS d:5197 , GLY d:5200 , VAL d:5201 , VAL d:5204 , LEU d:5279 , SER d:5282 , ALA d:5283 , VAL d:5286 , CLA d:6005 , PHO d:6039 , MGE d:6059
BINDING SITE FOR RESIDUE CLA D 6004
121
NC4
SOFTWARE
CLA b:6016 , PRO d:5039 , CYS d:5040 , LEU d:5043 , LEU d:5090 , LEU d:5091 , LEU d:5092 , TRP d:5093 , PHE d:5113 , HIS d:5117 , MET h:5035 , VAL h:5040 , VAL x:5029
BINDING SITE FOR RESIDUE CLA D 6008
122
NC5
SOFTWARE
MET d:5199 , ALA d:5202 , LEU d:5209 , LEU d:5210 , ILE d:5213 , THR d:5217 , ALA d:5249 , TRP d:5253 , ALA d:5260 , PHE d:5261 , LEU d:5267 , PHE d:5270 , VAL d:5274 , CLA d:6005 , MGE d:6062 , VAL l:5026 , LEU l:5027 , LEU l:5029 , LEU l:5030 , MGE l:6061
BINDING SITE FOR RESIDUE PQ9 D 6042
123
NC6
SOFTWARE
CLA a:6006 , LEU d:5043 , GLY d:5046 , GLY d:5047 , LEU d:5049 , THR d:5050 , PHE d:5113 , MGE d:6059 , THR f:5030 , PHE f:5033 , LEU f:5034 , VAL j:5021
BINDING SITE FOR RESIDUE BCR D 6050
124
NC7
SOFTWARE
PQ9 a:6043 , DGD c:6057 , LEU d:5049 , TYR d:5067 , GLY d:5070 , CYS d:5071 , ASN d:5072 , PHE d:5073 , CLA d:6004 , BCR d:6050 , MET f:5040 , GLN f:5041 , PHE j:5028 , GLY j:5031 , ALA j:5032 , GLY j:5035 , LEU j:5036
BINDING SITE FOR RESIDUE MGE D 6059
125
NC8
SOFTWARE
ASN a:5234 , TRP b:5005 , TYR b:5006 , ARG b:5007 , PHE b:5464 , TRP b:5468 , CLA b:6015 , CLA b:6019 , CLA b:6021 , TYR d:5141 , ARG d:5265 , PHE d:5269 , VAL d:5276 , TRP d:5280 , LEU l:5023 , MGE l:6061
BINDING SITE FOR RESIDUE MGE B 6060
126
NC9
SOFTWARE
CLA a:6003 , PHE d:5257 , ILE d:5259 , ALA d:5260 , PHE d:5261 , SER d:5262 , TRP d:5266 , CLA d:6005 , PQ9 d:6042 , ASN l:5013 , THR l:5015 , LEU l:5019 , LEU l:5022 , VAL l:5026 , PHE t:5017 , ALA t:5020 , ILE t:5021 , GLU t:5025
BINDING SITE FOR RESIDUE MGE D 6062
127
OC1
SOFTWARE
TYR d:5160 , PHE d:5169 , PHE d:5184
BINDING SITE FOR RESIDUE IOD D 6068
128
OC2
SOFTWARE
ILE e:5013 , HIS e:5023 , THR e:5026 , ILE e:5027 , LEU e:5030 , ILE f:5015 , PHE f:5016 , ARG f:5019 , TRP f:5020 , HIS f:5024 , ALA f:5027 , UNK n:5011 , UNK n:5015
BINDING SITE FOR RESIDUE HEM F 6040
129
OC3
SOFTWARE
CLA b:6009 , PHE h:5034 , MET h:5035 , LEU h:5037 , PHE h:5038 , PHE h:5041 , CLA h:6017 , LEU x:5016 , PHE x:5020
BINDING SITE FOR RESIDUE BCR H 6049
130
OC4
SOFTWARE
TYR b:5193 , PHE b:5250 , TYR b:5258 , TYR b:5273 , GLN b:5274 , THR b:5452 , ALA b:5456 , LEU b:5460 , PHE b:5463 , CLA b:6010 , GLY d:5086 , HIS d:5087 , LEU d:5116 , VAL d:5154 , ILE d:5159 , LEU d:5162 , SER d:5165 , VAL d:5287 , LEU h:5046 , TYR h:5049 , ASN h:5050 , VAL h:5060 , SER h:5061 , TRP h:5062
BINDING SITE FOR RESIDUE DGD B 6058
131
OC5
SOFTWARE
SER a:5232 , ASN a:5234 , TRP b:5005 , TYR b:5006 , CLA b:6019 , MGE b:6060 , TRP d:5266 , PHE d:5273 , PQ9 d:6042 , GLU l:5011 , ASN l:5013 , SER l:5016 , GLY l:5020 , LEU l:5022 , VAL l:5026 , VAL m:5017 , PRO m:5018 , PHE m:5021 , LEU m:5022
BINDING SITE FOR RESIDUE MGE L 6061
132
OC6
SOFTWARE
SER B:36 , CLA B:1015 , BCR B:1047 , PHE t:5008 , ALA t:5011 , ILE t:5014 , PHE t:5018 , ILE t:5021
BINDING SITE FOR RESIDUE BCR T 1046
133
OC7
SOFTWARE
CYS t:5012
BINDING SITE FOR RESIDUE IOD T 6066
134
OC8
SOFTWARE
ALA v:5062 , CYS v:5066 , HIS v:5067 , THR v:5074 , LEU v:5078 , LEU v:5085 , TYR v:5101 , TYR v:5108 , ILE v:5114 , HIS v:5118 , ILE v:5145
BINDING SITE FOR RESIDUE HEM V 6041
135
OC9
SOFTWARE
CLA c:6035 , ALA j:5014 , THR j:5015 , GLY j:5018 , MET j:5019 , ILE k:5028 , LEU k:5031 , ALA k:5034 , LEU k:5035 , PHE k:5037 , VAL k:5038 , BCR k:6052 , ILE y:5028 , GLY y:5029 , GLY y:5032
BINDING SITE FOR RESIDUE BCR K 6051
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 10)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_B559 (E:14-28,e:5014-5028,F:15-29,f:5015...)
2: CYTC (V:50-149,v:5050-5149)
3: REACTION_CENTER (D:190-216,d:5190-5216,A:191-217,a:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_B559
PS00537
Cytochrome b559 subunits heme-binding site signature.
PSBE_THEVL
14-28
2
E:14-28
e:5014-5028
PSBF_THEVL
15-29
2
F:15-29
f:5015-5029
2
CYTC
PS51007
Cytochrome c family profile.
CY550_THEVL
50-149
2
V:50-149
v:5050-5149
3
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
PSBD_THEVL
180-206
2
D:190-216
d:5190-5216
PSBA_THEVL
191-217
2
A:191-217
a:5191-5217
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(8, 16)
Info
all CATH domains
1a: CATH_3a0hO02 (O:179-214)
1b: CATH_3a0ho02 (o:5179-5214)
2a: CATH_3a0hC02 (C:304-399)
2b: CATH_3a0hc02 (c:5304-5399)
3a: CATH_3a0hV00 (V:27-163)
3b: CATH_3a0hv00 (v:5027-5163)
4a: CATH_3a0hU01 (U:7-93)
4b: CATH_3a0hu01 (u:5007-5093)
5a: CATH_3a0hZ00 (Z:1-62)
5b: CATH_3a0hz00 (z:5001-5062)
6a: CATH_3a0hH01 (H:2-52)
6b: CATH_3a0hh01 (h:5002-5052)
7a: CATH_3a0hE00 (E:3-84)
7b: CATH_3a0he00 (e:5003-5084)
8a: CATH_3a0hO01 (O:50-178,O:215-271)
8b: CATH_3a0ho01 (o:5050-5178,o:5215-5271)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
photosynthetic oxygen evolving center fold
(7)
Homologous Superfamily
:
photosynthetic oxygen evolving center domain
(7)
Synechococcus vulcanus (Thermosynechococcus vulcanus)
(2)
1a
3a0hO02
O:179-214
1b
3a0ho02
o:5179-5214
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
photosystem ii from thermosynechococcus elongatus
(8)
Synechococcus vulcanus (Thermosynechococcus vulcanus)
(2)
2a
3a0hC02
C:304-399
2b
3a0hc02
c:5304-5399
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Synechococcus vulcanus (Thermosynechococcus vulcanus)
(2)
3a
3a0hV00
V:27-163
3b
3a0hv00
v:5027-5163
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
Photosystem II 12 kDa extrinsic protein
(7)
Synechococcus vulcanus (Thermosynechococcus vulcanus)
(2)
4a
3a0hU01
U:7-93
4b
3a0hu01
u:5007-5093
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix hairpin bin
(7)
Synechococcus vulcanus (Thermosynechococcus vulcanus)
(2)
5a
3a0hZ00
Z:1-62
5b
3a0hz00
z:5001-5062
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
Photosystem q(b) protein (single helix)
(7)
Synechococcus vulcanus (Thermosynechococcus vulcanus)
(2)
6a
3a0hH01
H:2-52
6b
3a0hh01
h:5002-5052
Homologous Superfamily
:
Photosystem q(b) protein helix
(8)
Synechococcus vulcanus (Thermosynechococcus vulcanus)
(2)
7a
3a0hE00
E:3-84
7b
3a0he00
e:5003-5084
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Porin
(92)
Homologous Superfamily
:
Photosystem II, cytochrome c-550 precursor
(7)
Synechococcus vulcanus (Thermosynechococcus vulcanus)
(2)
8a
3a0hO01
O:50-178,O:215-271
8b
3a0ho01
o:5050-5178,o:5215-5271
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain T
Chain U
Chain V
Chain X
Chain Y
Chain Z
Chain a
Chain b
Chain c
Chain d
Chain e
Chain f
Chain h
Chain i
Chain j
Chain k
Chain l
Chain m
Chain n
Chain o
Chain t
Chain u
Chain v
Chain x
Chain y
Chain z
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.0 MB)
Header - Asym.Unit
Biol.Unit 1 (965 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3A0H
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help