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Biol. Unit 4
Info
Asym.Unit (343 KB)
Biol.Unit 1 (130 KB)
Biol.Unit 2 (130 KB)
Biol.Unit 3 (130 KB)
Biol.Unit 4 (130 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROLIFERATING CELL NUCLEAR ANTIGEN 2 AND SHORT PEPTIDE FROM HUMAN P21
Authors
:
W. Strzalka, T. Oyama, K. Tori, K. Morikawa
Date
:
21 Nov 08 (Deposition) - 02 Jun 09 (Release) - 02 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,I,J,K (1x)
Biol. Unit 2: D,E,F,L,M,N (1x)
Biol. Unit 3: G,O (3x)
Biol. Unit 4: H,P (3x)
Keywords
:
Protein-Peptide Complex, Dna Replication, Dna-Binding, Nucleus, Dna Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
W. Strzalka, T. Oyama, K. Tori, K. Morikawa
Crystal Structures Of The Arabidopsis Thaliana Proliferating Cell Nuclear Antigen 1 And 2 Proteins Complexed With The Human P21 C-Terminal Segment
Protein Sci. V. 18 1072 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
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No.
Name
Count
Type
Full Name
1
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(1, 1)
Info
All Sites
1: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
ARG H:210 , LYS H:254
BINDING SITE FOR RESIDUE SO4 H 961
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014875 (D149G, chain P, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014875
D
149
G
CDN1A_HUMAN
Polymorphism
1801724
P
D
149
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (H:34-57)
2: PCNA_2 (H:61-79)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA2_ARATH
34-57
3
-
-
-
-
-
-
-
H:34-57
2
PCNA_2
PS00293
Proliferating cell nuclear antigen signature 2.
PCNA2_ARATH
61-79
3
-
-
-
-
-
-
-
H:61-79
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2zvwA00 (A:1-255)
1b: CATH_2zvwB00 (B:1-255)
1c: CATH_2zvwC00 (C:1-255)
1d: CATH_2zvwD00 (D:1-255)
1e: CATH_2zvwE00 (E:1-255)
1f: CATH_2zvwF00 (F:1-255)
1g: CATH_2zvwG00 (G:1-255)
1h: CATH_2zvwH00 (H:1-255)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Box
(41)
Topology
:
Proliferating Cell Nuclear Antigen
(41)
Homologous Superfamily
:
[code=3.70.10.10, no name defined]
(41)
Mouse-ear cress,thale-cress (Arabidopsis thaliana)
(2)
1a
2zvwA00
A:1-255
1b
2zvwB00
B:1-255
1c
2zvwC00
C:1-255
1d
2zvwD00
D:1-255
1e
2zvwE00
E:1-255
1f
2zvwF00
F:1-255
1g
2zvwG00
G:1-255
1h
2zvwH00
H:1-255
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Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_PCNA_C_2zvwH01 (H:127-254)
1b: PFAM_PCNA_C_2zvwH02 (H:127-254)
1c: PFAM_PCNA_C_2zvwH03 (H:127-254)
1d: PFAM_PCNA_C_2zvwH04 (H:127-254)
1e: PFAM_PCNA_C_2zvwH05 (H:127-254)
1f: PFAM_PCNA_C_2zvwH06 (H:127-254)
1g: PFAM_PCNA_C_2zvwH07 (H:127-254)
1h: PFAM_PCNA_C_2zvwH08 (H:127-254)
2a: PFAM_PCNA_N_2zvwH09 (H:1-125)
2b: PFAM_PCNA_N_2zvwH10 (H:1-125)
2c: PFAM_PCNA_N_2zvwH11 (H:1-125)
2d: PFAM_PCNA_N_2zvwH12 (H:1-125)
2e: PFAM_PCNA_N_2zvwH13 (H:1-125)
2f: PFAM_PCNA_N_2zvwH14 (H:1-125)
2g: PFAM_PCNA_N_2zvwH15 (H:1-125)
2h: PFAM_PCNA_N_2zvwH16 (H:1-125)
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Clan
:
DNA_clamp
(33)
Family
:
PCNA_C
(23)
Arabidopsis thaliana (Mouse-ear cress)
(2)
1a
PCNA_C-2zvwH01
H:127-254
1b
PCNA_C-2zvwH02
H:127-254
1c
PCNA_C-2zvwH03
H:127-254
1d
PCNA_C-2zvwH04
H:127-254
1e
PCNA_C-2zvwH05
H:127-254
1f
PCNA_C-2zvwH06
H:127-254
1g
PCNA_C-2zvwH07
H:127-254
1h
PCNA_C-2zvwH08
H:127-254
Family
:
PCNA_N
(25)
Arabidopsis thaliana (Mouse-ear cress)
(2)
2a
PCNA_N-2zvwH09
H:1-125
2b
PCNA_N-2zvwH10
H:1-125
2c
PCNA_N-2zvwH11
H:1-125
2d
PCNA_N-2zvwH12
H:1-125
2e
PCNA_N-2zvwH13
H:1-125
2f
PCNA_N-2zvwH14
H:1-125
2g
PCNA_N-2zvwH15
H:1-125
2h
PCNA_N-2zvwH16
H:1-125
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Asym.Unit (343 KB)
Header - Asym.Unit
Biol.Unit 1 (130 KB)
Header - Biol.Unit 1
Biol.Unit 2 (130 KB)
Header - Biol.Unit 2
Biol.Unit 3 (130 KB)
Header - Biol.Unit 3
Biol.Unit 4 (130 KB)
Header - Biol.Unit 4
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