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Asym. Unit
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Asym.Unit (128 KB)
Biol.Unit 1 (121 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PCNA IN COMPLEX WITH DNA POLYMERASE ETA FRAGMENT
Authors
:
A. Hishiki, H. Hashimoto, T. Hanafusa, K. Kamei, E. Ohashi, T. Shimizu, M. Sato
Date
:
11 Nov 08 (Deposition) - 10 Feb 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,U,V,W
Biol. Unit 1: A,B,C,U,V,W (1x)
Keywords
:
Dna Replication, Pcna, Clamp, Translesion Synthesis, Tls, Dna Polymerase, Tls Polymerase, Complex, Pip-Box, Dna Polymerase Eta, Transferase, Dna-Binding, Nucleus, Systemic Lupus Erythematosus, Disease Mutation, Dna Damage, Dna Repair, Dna Synthesis, Dna- Directed Dna Polymerase, Magnesium, Metal-Binding, Mutator Protein, Nucleotidyltransferase, Phosphoprotein, Schiff Base, Xeroderma Pigmentosum
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Hishiki, H. Hashimoto, T. Hanafusa, K. Kamei, E. Ohashi, T. Shimizu H. Ohmori, M. Sato
Structural Basis For Novel Interactions Between Human Translesion Synthesis Polymerases And Proliferating Cell Nuclear Antigen
J. Biol. Chem. V. 284 10552 2009
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071871 (S228I, chain A/B/C, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071871
S
228
I
PCNA_HUMAN
Disease (ATLD2)
---
A/B/C
S
228
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: PCNA_1 (A:34-57,B:34-57,C:34-57)
2: PCNA_2 (A:61-79,B:61-79,C:61-79)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PCNA_1
PS01251
Proliferating cell nuclear antigen signature 1.
PCNA_HUMAN
34-57
3
A:34-57
B:34-57
C:34-57
2
PCNA_2
PS00293
Proliferating cell nuclear antigen signature 2.
PCNA_HUMAN
61-79
3
A:61-79
B:61-79
C:61-79
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Exons
(6, 18)
Info
All Exons
Exon 1.2b (A:1-74 | B:1-74 | C:1-74)
Exon 1.3 (A:74-107 | B:74-107 | C:74-107)
Exon 1.4 (A:107-129 | B:107-129 | C:107-129)
Exon 1.5 (A:130-185 | B:130-194 (gaps) | C:1...)
Exon 1.6 (A:195-236 | B:195-236 | C:195-236)
Exon 1.7 (A:236-255 | B:236-254 | C:236-257)
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All Exon Boundaries
1: Boundary 1.1/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000379160
1
ENSE00001480155
chr20:
5107272-5107146
127
PCNA_HUMAN
-
0
0
-
-
1.2b
ENST00000379160
2b
ENSE00001480145
chr20:
5100560-5100224
337
PCNA_HUMAN
1-74
74
3
A:1-74
B:1-74
C:1-74
74
74
74
1.3
ENST00000379160
3
ENSE00001747465
chr20:
5099512-5099415
98
PCNA_HUMAN
74-107
34
3
A:74-107
B:74-107
C:74-107
34
34
34
1.4
ENST00000379160
4
ENSE00001693283
chr20:
5099323-5099256
68
PCNA_HUMAN
107-129
23
3
A:107-129
B:107-129
C:107-129
23
23
23
1.5
ENST00000379160
5
ENSE00000906721
chr20:
5098310-5098116
195
PCNA_HUMAN
130-194
65
3
A:130-185
B:130-194 (gaps)
C:130-194 (gaps)
56
65
65
1.6
ENST00000379160
6
ENSE00000906720
chr20:
5096218-5096095
124
PCNA_HUMAN
195-236
42
3
A:195-236
B:195-236
C:195-236
42
42
42
1.7
ENST00000379160
7
ENSE00000906719
chr20:
5096008-5095599
410
PCNA_HUMAN
236-261
26
3
A:236-255
B:236-254
C:236-257
20
19
22
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SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2zvkC00 (C:1-257)
1b: CATH_2zvkA00 (A:1-255)
1c: CATH_2zvkB00 (B:1-254)
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Class
:
Alpha Beta
(26913)
Architecture
:
Box
(41)
Topology
:
Proliferating Cell Nuclear Antigen
(41)
Homologous Superfamily
:
[code=3.70.10.10, no name defined]
(41)
Human (Homo sapiens)
(10)
1a
2zvkC00
C:1-257
1b
2zvkA00
A:1-255
1c
2zvkB00
B:1-254
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_PCNA_C_2zvkC01 (C:127-254)
1b: PFAM_PCNA_C_2zvkC02 (C:127-254)
1c: PFAM_PCNA_C_2zvkC03 (C:127-254)
2a: PFAM_PCNA_N_2zvkC04 (C:1-125)
2b: PFAM_PCNA_N_2zvkC05 (C:1-125)
2c: PFAM_PCNA_N_2zvkC06 (C:1-125)
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Clan
:
DNA_clamp
(33)
Family
:
PCNA_C
(23)
Homo sapiens (Human)
(9)
1a
PCNA_C-2zvkC01
C:127-254
1b
PCNA_C-2zvkC02
C:127-254
1c
PCNA_C-2zvkC03
C:127-254
Family
:
PCNA_N
(25)
Homo sapiens (Human)
(9)
2a
PCNA_N-2zvkC04
C:1-125
2b
PCNA_N-2zvkC05
C:1-125
2c
PCNA_N-2zvkC06
C:1-125
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Asym.Unit (128 KB)
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