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2ZQO
Biol. Unit 1
Info
Asym.Unit (57 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (27 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EARTHWORM R-TYPE LECTIN C-HALF IN COMPLEX WITH GALNAC
Authors
:
R. Suzuki, A. Kuno, T. Hasegawa, J. Hirabayashi, K. Kasai, M. Momma, Z. Fujimoto
Date
:
13 Aug 08 (Deposition) - 02 Sep 08 (Release) - 10 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Earthworm Lumbricus Terrestris, Hemagglutinin, R-Type Lectin, Beta-Trefoil Fold, Sugar Complex, Lectin, Sugar Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. Suzuki, A. Kuno, T. Hasegawa, J. Hirabayashi, K. Kasai, M. Momma, Z. Fujimoto
Sugar-Complex Structures Of The C-Half Domain Of The Galactose-Binding Lectin Ew29 From The Earthworm Lumbricus Terrestris
Acta Crystallogr. , Sect. D V. 65 49 2009
(for further references see the
PDB file header
)
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
2a: IMIDAZOLE (IMDa)
3a: N-ACETYL-D-GALACTOSAMINE (NGAa)
3b: N-ACETYL-D-GALACTOSAMINE (NGAb)
3c: N-ACETYL-D-GALACTOSAMINE (NGAc)
3d: N-ACETYL-D-GALACTOSAMINE (NGAd)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
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No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
IMD
1
Ligand/Ion
IMIDAZOLE
3
NGA
2
Ligand/Ion
N-ACETYL-D-GALACTOSAMINE
4
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:146 , ILE A:147 , GLU A:148 , GLY A:149 , GLN A:150 , TRP A:161 , LYS A:164 , ASN A:171 , HOH A:475 , HOH A:484 , HOH A:604 , THR B:168 , HOH B:448
BINDING SITE FOR RESIDUE NGA A 270
2
AC2
SOFTWARE
SER A:138 , GLU A:139 , GLY A:142 , ASP A:230 , ILE A:231 , ILE A:232 , LYS A:233 , HIS A:248 , ASN A:252 , HOH A:462 , HOH A:498 , HOH A:530 , HOH A:544 , HOH A:547 , HOH A:612
BINDING SITE FOR RESIDUE NGA A 271
3
AC3
SOFTWARE
HIS A:241 , IMD A:451 , HOH A:555 , HOH A:557 , HIS B:241 , HOH B:516
BINDING SITE FOR RESIDUE CD A 401
4
AC4
SOFTWARE
ASN A:217 , LYS A:233 , LYS A:254 , HOH A:566 , HOH A:595
BINDING SITE FOR RESIDUE PO4 A 421
5
AC5
SOFTWARE
GLY A:239 , HIS A:241 , CD A:401 , GLY B:239 , HIS B:241
BINDING SITE FOR RESIDUE IMD A 451
6
AC6
SOFTWARE
THR A:168 , HOH A:508 , ASP B:146 , ILE B:147 , GLU B:148 , GLY B:149 , GLN B:150 , TRP B:161 , LYS B:164 , ASN B:171 , HOH B:450 , HOH B:476 , HOH B:557
BINDING SITE FOR RESIDUE NGA B 301
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SAPs(SNPs)/Variants
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2zqoa1 (A:131-260)
1b: SCOP_d2zqob_ (B:)
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Ricin B-like lectins
(91)
Family
:
Ricin B-like
(65)
Protein domain
:
29-kDa galactose-binding lectin
(3)
Common earthworm (Lumbricus terrestris) [TaxId: 6398]
(3)
1a
d2zqoa1
A:131-260
1b
d2zqob_
B:
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CATH Domains
(0, 0)
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ricin_B_lectin_2zqoB01 (B:131-255)
1b: PFAM_Ricin_B_lectin_2zqoB02 (B:131-255)
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)
Clan
:
Trefoil
(131)
Family
:
Ricin_B_lectin
(25)
Lumbricus terrestris (Common earthworm)
(2)
1a
Ricin_B_lectin-2zqoB01
B:131-255
1b
Ricin_B_lectin-2zqoB02
B:131-255
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (57 KB)
Header - Asym.Unit
Biol.Unit 1 (28 KB)
Header - Biol.Unit 1
Biol.Unit 2 (27 KB)
Header - Biol.Unit 2
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