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2ZNY
Biol. Unit 4
Info
Asym.Unit (197 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (51 KB)
Biol.Unit 4 (49 KB)
Biol.Unit 5 (190 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FFRP
Authors
:
M. Yamada, M. Suzuki
Date
:
02 May 08 (Deposition) - 17 Mar 09 (Release) - 17 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.59
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Keywords
:
Transcription, Dna-Binding, Transcription Regulation, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yamada, S. A. Ishijima, M. Suzuki
Interactions Between The Archaeal Transcription Repressor Fl11 And Its Coregulators Lysine And Arginine.
Proteins V. 74 520 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ARGININE (ARGa)
1b: ARGININE (ARGb)
1c: ARGININE (ARGc)
1d: ARGININE (ARGd)
1e: ARGININE (ARGe)
1f: ARGININE (ARGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ARG
1
Mod. Amino Acid
ARGININE
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Sites
(2, 2)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
LEU F:141 , ASP F:142 , THR F:153 , HIS F:154 , THR F:155 , TYR H:100 , GLU H:118 , THR H:119 , THR H:120 , GLY H:121 , TYR H:123 , ASP H:124
BINDING SITE FOR RESIDUE ARG F 173
2
AC6
SOFTWARE
TYR E:100 , GLU E:118 , THR E:119 , THR E:120 , GLY E:121 , TYR E:123 , ASP E:124 , LEU F:159 , LEU G:141 , ASP G:142 , THR G:153 , HIS G:154 , THR G:155
BINDING SITE FOR RESIDUE ARG G 172
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HTH_ASNC_2 (G:25-86,H:25-86)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_ASNC_2
PS50956
AsnC-type HTH domain profile.
REG6_PYRHO
5-66
2
-
-
-
-
-
-
G:25-86
H:25-86
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2znya1 (A:25-84)
1b: SCOP_d2znyb1 (B:25-84)
1c: SCOP_d2znyc1 (C:25-84)
1d: SCOP_d2znyd1 (D:25-84)
1e: SCOP_d2znye1 (E:25-84)
1f: SCOP_d2znyf1 (F:25-84)
1g: SCOP_d2znyg1 (G:25-84)
1h: SCOP_d2znyh1 (H:25-84)
2a: SCOP_d2znya2 (A:85-170)
2b: SCOP_d2znyb2 (B:85-170)
2c: SCOP_d2znyc2 (C:85-170)
2d: SCOP_d2znyd2 (D:85-170)
2e: SCOP_d2znye2 (E:85-170)
2f: SCOP_d2znyf2 (F:85-170)
2g: SCOP_d2znyg2 (G:85-170)
2h: SCOP_d2znyh2 (H:85-170)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Lrp/AsnC-like transcriptional regulator N-terminal domain
(7)
Protein domain
:
Putative transcriptional regulator PH1519
(4)
Pyrococcus horikoshii [TaxId: 53953]
(4)
1a
d2znya1
A:25-84
1b
d2znyb1
B:25-84
1c
d2znyc1
C:25-84
1d
d2znyd1
D:25-84
1e
d2znye1
E:25-84
1f
d2znyf1
F:25-84
1g
d2znyg1
G:25-84
1h
d2znyh1
H:25-84
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Dimeric alpha+beta barrel
(122)
Family
:
Lrp/AsnC-like transcriptional regulator C-terminal domain
(8)
Protein domain
:
Putative transcriptional regulator PH1519
(4)
Pyrococcus horikoshii [TaxId: 53953]
(4)
2a
d2znya2
A:85-170
2b
d2znyb2
B:85-170
2c
d2znyc2
C:85-170
2d
d2znyd2
D:85-170
2e
d2znye2
E:85-170
2f
d2znyf2
F:85-170
2g
d2znyg2
G:85-170
2h
d2znyh2
H:85-170
[
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]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2znyA02 (A:77-170)
1b: CATH_2znyC02 (C:77-170)
1c: CATH_2znyD02 (D:77-170)
1d: CATH_2znyE02 (E:77-170)
1e: CATH_2znyF02 (F:77-170)
1f: CATH_2znyG02 (G:77-170)
1g: CATH_2znyH02 (H:77-170)
1h: CATH_2znyB02 (B:77-170)
2a: CATH_2znyA01 (A:25-76)
2b: CATH_2znyC01 (C:25-76)
2c: CATH_2znyD01 (D:25-76)
2d: CATH_2znyE01 (E:25-76)
2e: CATH_2znyF01 (F:25-76)
2f: CATH_2znyG01 (G:25-76)
2g: CATH_2znyH01 (H:25-76)
2h: CATH_2znyB01 (B:25-76)
View:
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(
)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.920, no name defined]
(27)
Pyrococcus horikoshii. Organism_taxid: 53953. Strain: ot3.
(2)
1a
2znyA02
A:77-170
1b
2znyC02
C:77-170
1c
2znyD02
D:77-170
1d
2znyE02
E:77-170
1e
2znyF02
F:77-170
1f
2znyG02
G:77-170
1g
2znyH02
H:77-170
1h
2znyB02
B:77-170
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Pyrococcus horikoshii. Organism_taxid: 53953. Strain: ot3.
(2)
2a
2znyA01
A:25-76
2b
2znyC01
C:25-76
2c
2znyD01
D:25-76
2d
2znyE01
E:25-76
2e
2znyF01
F:25-76
2f
2znyG01
G:25-76
2g
2znyH01
H:25-76
2h
2znyB01
B:25-76
[
close CATH info
]
Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_AsnC_trans_reg_2znyH01 (H:91-161)
1b: PFAM_AsnC_trans_reg_2znyH02 (H:91-161)
1c: PFAM_AsnC_trans_reg_2znyH03 (H:91-161)
1d: PFAM_AsnC_trans_reg_2znyH04 (H:91-161)
1e: PFAM_AsnC_trans_reg_2znyH05 (H:91-161)
1f: PFAM_AsnC_trans_reg_2znyH06 (H:91-161)
1g: PFAM_AsnC_trans_reg_2znyH07 (H:91-161)
1h: PFAM_AsnC_trans_reg_2znyH08 (H:91-161)
2a: PFAM_HTH_AsnC_type_2znyH09 (H:25-66)
2b: PFAM_HTH_AsnC_type_2znyH10 (H:25-66)
2c: PFAM_HTH_AsnC_type_2znyH11 (H:25-66)
2d: PFAM_HTH_AsnC_type_2znyH12 (H:25-66)
2e: PFAM_HTH_AsnC_type_2znyH13 (H:25-66)
2f: PFAM_HTH_AsnC_type_2znyH14 (H:25-66)
2g: PFAM_HTH_AsnC_type_2znyH15 (H:25-66)
2h: PFAM_HTH_AsnC_type_2znyH16 (H:25-66)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Dim_A_B_barrel
(36)
Family
:
AsnC_trans_reg
(8)
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
(4)
1a
AsnC_trans_reg-2znyH01
H:91-161
1b
AsnC_trans_reg-2znyH02
H:91-161
1c
AsnC_trans_reg-2znyH03
H:91-161
1d
AsnC_trans_reg-2znyH04
H:91-161
1e
AsnC_trans_reg-2znyH05
H:91-161
1f
AsnC_trans_reg-2znyH06
H:91-161
1g
AsnC_trans_reg-2znyH07
H:91-161
1h
AsnC_trans_reg-2znyH08
H:91-161
Clan
:
HTH
(544)
Family
:
HTH_AsnC-type
(3)
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
(3)
2a
HTH_AsnC-type-2znyH09
H:25-66
2b
HTH_AsnC-type-2znyH10
H:25-66
2c
HTH_AsnC-type-2znyH11
H:25-66
2d
HTH_AsnC-type-2znyH12
H:25-66
2e
HTH_AsnC-type-2znyH13
H:25-66
2f
HTH_AsnC-type-2znyH14
H:25-66
2g
HTH_AsnC-type-2znyH15
H:25-66
2h
HTH_AsnC-type-2znyH16
H:25-66
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