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2ZNX
Asym. Unit
Info
Asym.Unit (125 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (61 KB)
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(1)
Title
:
5-FLUOROTRYPTOPHAN INCORPORATED SCFV10 COMPLEXED TO HEN EGG LYSOZYME
Authors
:
M. E. Desantis, M. Acchione, M. Li, R. L. Walter, A. Wlodawer, S. Smith-G
Date
:
02 May 08 (Deposition) - 27 Jan 09 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,Y,Z
Biol. Unit 1: A,Y (1x)
Biol. Unit 2: B,Z (1x)
Keywords
:
Fluorotryptohpan, 5-Fluorotryptophan, 19F, Single Chain Fv, Lysozyme, Allergen, Antimicrobial, Bacteriolytic Enzyme, Glycosidase, Hydrolase, Immune System-Hydrolase Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. Acchione, Y. C. Lee, M. E. Desantis, C. A. Lipschultz, A. Wlodawer, M. Li, A. Shanmuganathan, R. L. Walter, S. Smith-Gill, J. J. Barchi
Specific Fluorine Labeling Of The Hyhel10 Antibody Affects Antigen Binding And Dynamics
Biochemistry V. 51 6017 2012
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHO... (1PGa)
1b: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHO... (1PGb)
2a: FLUOROTRYPTOPHANE (FTRa)
2b: FLUOROTRYPTOPHANE (FTRb)
2c: FLUOROTRYPTOPHANE (FTRc)
2d: FLUOROTRYPTOPHANE (FTRd)
2e: FLUOROTRYPTOPHANE (FTRe)
2f: FLUOROTRYPTOPHANE (FTRf)
2g: FLUOROTRYPTOPHANE (FTRg)
2h: FLUOROTRYPTOPHANE (FTRh)
2i: FLUOROTRYPTOPHANE (FTRi)
2j: FLUOROTRYPTOPHANE (FTRj)
2k: FLUOROTRYPTOPHANE (FTRk)
2l: FLUOROTRYPTOPHANE (FTRl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PG
2
Ligand/Ion
2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
2
FTR
12
Mod. Amino Acid
FLUOROTRYPTOPHANE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:34 , TYR B:36 , TYR B:50 , GLN B:89 , SER B:91 , ASP B:221 , ILE Z:78
BINDING SITE FOR RESIDUE 1PG B 243
2
AC2
SOFTWARE
HIS A:34 , TYR A:36 , TYR A:50 , GLN A:89 , ASP A:221 , CYS Y:76 , ASN Y:93
BINDING SITE FOR RESIDUE 1PG A 243
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (Y:1-129,Z:1-129)
2: LACTALBUMIN_LYSOZYME_1 (Y:76-94,Z:76-94)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LYSC_CHICK
19-147
2
Y:1-129
Z:1-129
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LYSC_CHICK
94-112
2
Y:76-94
Z:76-94
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Exons
(4, 8)
Info
All Exons
Exon 1.1a (Y:1-28 | Z:1-28)
Exon 1.2 (Y:28-82 | Z:28-82)
Exon 1.3 (Y:82-108 | Z:82-108)
Exon 1.4a (Y:108-129 | Z:108-129)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4a
5: Boundary 1.4a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSGALT00000016196
1a
ENSGALE00000107726
chr1:
37298007-37298210
204
LYSC_CHICK
1-46
46
2
Y:1-28
Z:1-28
28
28
1.2
ENSGALT00000016196
2
ENSGALE00000107723
chr1:
37299463-37299624
162
LYSC_CHICK
46-100
55
2
Y:28-82
Z:28-82
55
55
1.3
ENSGALT00000016196
3
ENSGALE00000107724
chr1:
37301396-37301474
79
LYSC_CHICK
100-126
27
2
Y:82-108
Z:82-108
27
27
1.4a
ENSGALT00000016196
4a
ENSGALE00000107725
chr1:
37301556-37301734
179
LYSC_CHICK
126-147
22
2
Y:108-129
Z:108-129
22
22
[
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SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2znxa1 (A:1-106)
1b: SCOP_d2znxa2 (A:124-236)
1c: SCOP_d2znxb1 (B:1-106)
1d: SCOP_d2znxb2 (B:124-236)
2a: SCOP_d2znxy_ (Y:)
2b: SCOP_d2znxz_ (Z:)
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Classes
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(
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)
(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d2znxa1
A:1-106
1b
d2znxa2
A:124-236
1c
d2znxb1
B:1-106
1d
d2znxb2
B:124-236
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
Lysozyme
(696)
Chicken (Gallus gallus) [TaxId: 9031]
(459)
2a
d2znxy_
Y:
2b
d2znxz_
Z:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2znxY00 (Y:1-129)
1b: CATH_2znxZ00 (Z:1-129)
2a: CATH_2znxA02 (A:126-224)
2b: CATH_2znxB02 (B:126-224)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.10, no name defined]
(605)
Human (Homo sapiens, undefined)
(2)
1a
2znxY00
Y:1-129
1b
2znxZ00
Z:1-129
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens, undefined)
(2)
2a
2znxA02
A:126-224
2b
2znxB02
B:126-224
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Lys_2znxZ01 (Z:1-127)
1b: PFAM_Lys_2znxZ02 (Z:1-127)
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Organisms
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(
)
Clan
:
Lysozyme
(266)
Family
:
Lys
(245)
Gallus gallus (Chicken)
(156)
1a
Lys-2znxZ01
Z:1-127
1b
Lys-2znxZ02
Z:1-127
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Asymmetric Unit 1
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