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Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2ZNH
Asym. Unit
Info
Asym.Unit (141 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A DOMAIN-SWAPPED SERPIN DIMER
Authors
:
M. Yamasaki, J. A. Huntington
Date
:
25 Apr 08 (Deposition) - 21 Oct 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Domain-Swap, Blood Coagulation, Disease Mutation, Glycoprotein, Heparin-Binding, Protease Inhibitor, Secreted, Serine Protease Inhibitor, Thrombophilia, Blood Clotting
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yamasaki, W. Li, D. J. Johnson, J. A. Huntington
Crystal Structure Of A Stable Dimer Reveals The Molecular Basis Of Serpin Polymerization
Nature V. 455 1255 2008
[
close entry info
]
Hetero Components
(3, 12)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
2
Ligand/Ion
CITRIC ACID
2
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:96
BINDING SITE FOR RESIDUE NAG A 501
2
AC2
SOFTWARE
ASN A:18 , PRO A:19 , MET A:20 , ASN A:155 , THR A:157 , ALA B:356 , GLU B:357
BINDING SITE FOR RESIDUE NAG A 601
3
AC3
SOFTWARE
ASN A:18
BINDING SITE FOR RESIDUE NAG A 602
4
AC4
SOFTWARE
ALA A:356 , GLU A:357 , ASN B:18 , MET B:20 , ASN B:155 , THR B:157
BINDING SITE FOR RESIDUE NAG B 601
5
AC6
SOFTWARE
HIS B:1 , GLY B:2 , SER B:3
BINDING SITE FOR RESIDUE CIT B 604
6
AC7
SOFTWARE
ARG B:145 , TRP B:189 , LYS B:193
BINDING SITE FOR RESIDUE CIT B 605
[
close Site info
]
SAPs(SNPs)/Variants
(84, 168)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_007033 (I7N, chain A/B, )
02: VAR_007034 (M20T, chain A/B, )
03: VAR_071199 (C21F, chain A/B, )
04: VAR_007035 (R24C, chain A/B, )
05: VAR_007037 (R47C, chain A/B, )
06: VAR_007038 (R47H, chain A/B, )
07: VAR_007039 (R47S, chain A/B, )
08: VAR_007041 (R57C, chain A/B, )
09: VAR_007042 (F58L, chain A/B, )
10: VAR_027452 (Y63C, chain A/B, )
11: VAR_012316 (Y63S, chain A/B, )
12: VAR_027453 (L66P, chain A/B, )
13: VAR_007044 (P80T, chain A/B, )
14: VAR_027454 (M89K, chain A/B, )
15: VAR_071200 (G93D, chain A/B, )
16: VAR_027455 (C95R, chain A/B, )
17: VAR_007045 (L99F, chain A/B, )
18: VAR_007046 (L99V, chain A/B, )
19: VAR_007047 (Q101K, chain A/B, )
20: VAR_027456 (K114E, chain A/B, )
21: VAR_013085 (T115A, chain A/B, )
22: VAR_007049 (S116P, chain A/B, )
23: VAR_007050 (Q118P, chain A/B, )
24: VAR_007051 (H120Y, chain A/B, )
25: VAR_007053 (L126P, chain A/B, )
26: VAR_027457 (C128Y, chain A/B, )
27: VAR_007054 (R129Q, chain A/B, )
28: VAR_071201 (S138P, chain A/B, )
29: VAR_027458 (L146H, chain A/B, )
30: VAR_027459 (F147L, chain A/B, )
31: VAR_007055 (Y158C, chain A/B, )
32: VAR_007056 (Y166C, chain A/B, )
33: VAR_027460 (Y166H, chain A/B, )
34: VAR_027461 (S182F, chain A/B, )
35: VAR_007057 (S182Y, chain A/B, )
36: VAR_071202 (I186N, chain A/B, )
37: VAR_007059 (N187D, chain A/B, )
38: VAR_007058 (N187K, chain A/B, )
39: VAR_027463 (S191P, chain A/B, )
40: VAR_027464 (T211I, chain A/B, )
41: VAR_071203 (V216G, chain A/B, )
42: VAR_027465 (I219T, chain A/B, )
43: VAR_027466 (W225R, chain A/B, )
44: VAR_027467 (F229L, chain A/B, )
45: VAR_007060 (E237K, chain A/B, )
46: VAR_007062 (M251I, chain A/B, )
47: VAR_027468 (M251V, chain A/B, )
48: VAR_071204 (R261P, chain A/B, )
49: VAR_007063 (L270P, chain A/B, )
50: VAR_007064 (I284N, chain A/B, )
51: VAR_027469 (S291P, chain A/B, )
52: VAR_007065 (E302K, chain A/B, )
53: VAR_007067 (S349P, chain A/B, )
54: VAR_007068 (R359Q, chain A/B, )
55: VAR_027470 (S365P, chain A/B, )
56: VAR_027471 (D366H, chain A/B, )
57: VAR_071205 (H369R, chain A/B, )
58: VAR_027472 (S380R, chain A/B, )
59: VAR_007069 (A382T, chain A/B, )
60: VAR_007070 (A384P, chain A/B, )
61: VAR_007071 (A384S, chain A/B, )
62: VAR_007072 (A387V, chain A/B, )
63: VAR_007073 (G392D, chain A/B, )
64: VAR_007075 (R393C, chain A/B, )
65: VAR_007074 (R393H, chain A/B, )
66: VAR_007076 (R393P, chain A/B, )
67: VAR_007077 (S394L, chain A/B, )
68: VAR_007078 (F402C, chain A/B, )
69: VAR_007080 (F402L, chain A/B, )
70: VAR_007079 (F402S, chain A/B, )
71: VAR_007081 (A404T, chain A/B, )
72: VAR_007082 (N405K, chain A/B, )
73: VAR_009258 (R406G, chain A/B, )
74: VAR_007083 (R406M, chain A/B, )
75: VAR_071206 (P407A, chain A/B, )
76: VAR_007084 (P407L, chain A/B, )
77: VAR_007085 (P407T, chain A/B, )
78: VAR_027473 (L409P, chain A/B, )
79: VAR_007086 (I421T, chain A/B, )
80: VAR_007087 (G424R, chain A/B, )
81: VAR_007088 (R425T, chain A/B, )
82: VAR_007090 (A427D, chain A/B, )
83: VAR_007091 (P429L, chain A/B, )
84: VAR_007092 (C430F, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_007033
I
39
N
ANT3_HUMAN
Disease (AT3D)
28929468
A/B
I
7
N
02
UniProt
VAR_007034
M
52
T
ANT3_HUMAN
Unclassified
---
A/B
M
20
T
03
UniProt
VAR_071199
C
53
F
ANT3_HUMAN
Disease (AT3D)
---
A/B
C
21
F
04
UniProt
VAR_007035
R
56
C
ANT3_HUMAN
Disease (AT3D)
28929469
A/B
R
24
C
05
UniProt
VAR_007037
R
79
C
ANT3_HUMAN
Disease (AT3D)
---
A/B
R
47
C
06
UniProt
VAR_007038
R
79
H
ANT3_HUMAN
Disease (AT3D)
121909552
A/B
R
47
H
07
UniProt
VAR_007039
R
79
S
ANT3_HUMAN
Disease (AT3D)
---
A/B
R
47
S
08
UniProt
VAR_007041
R
89
C
ANT3_HUMAN
Disease (AT3D)
147266200
A/B
R
57
C
09
UniProt
VAR_007042
F
90
L
ANT3_HUMAN
Disease (AT3D)
---
A/B
F
58
L
10
UniProt
VAR_027452
Y
95
C
ANT3_HUMAN
Disease (AT3D)
---
A/B
Y
63
C
11
UniProt
VAR_012316
Y
95
S
ANT3_HUMAN
Disease (AT3D)
---
A/B
Y
63
S
12
UniProt
VAR_027453
L
98
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
L
66
P
13
UniProt
VAR_007044
P
112
T
ANT3_HUMAN
Disease (AT3D)
---
A/B
P
80
T
14
UniProt
VAR_027454
M
121
K
ANT3_HUMAN
Disease (AT3D)
---
A/B
M
89
K
15
UniProt
VAR_071200
G
125
D
ANT3_HUMAN
Disease (AT3D)
---
A/B
G
93
D
16
UniProt
VAR_027455
C
127
R
ANT3_HUMAN
Disease (AT3D)
---
A/B
C
95
R
17
UniProt
VAR_007045
L
131
F
ANT3_HUMAN
Disease (AT3D)
---
A/B
L
99
F
18
UniProt
VAR_007046
L
131
V
ANT3_HUMAN
Disease (AT3D)
---
A/B
L
99
V
19
UniProt
VAR_007047
Q
133
K
ANT3_HUMAN
Disease (AT3D)
---
A/B
Q
101
K
20
UniProt
VAR_027456
K
146
E
ANT3_HUMAN
Disease (AT3D)
---
A/B
K
114
E
21
UniProt
VAR_013085
T
147
A
ANT3_HUMAN
Polymorphism
2227606
A/B
T
115
A
22
UniProt
VAR_007049
S
148
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
S
116
P
23
UniProt
VAR_007050
Q
150
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
Q
118
P
24
UniProt
VAR_007051
H
152
Y
ANT3_HUMAN
Disease (AT3D)
---
A/B
H
120
Y
25
UniProt
VAR_007053
L
158
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
L
126
P
26
UniProt
VAR_027457
C
160
Y
ANT3_HUMAN
Disease (AT3D)
---
A/B
C
128
Y
27
UniProt
VAR_007054
R
161
Q
ANT3_HUMAN
Disease (AT3D)
---
A/B
R
129
Q
28
UniProt
VAR_071201
S
170
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
S
138
P
29
UniProt
VAR_027458
L
178
H
ANT3_HUMAN
Disease (AT3D)
---
A/B
L
146
H
30
UniProt
VAR_027459
F
179
L
ANT3_HUMAN
Disease (AT3D)
---
A/B
F
147
L
31
UniProt
VAR_007055
Y
190
C
ANT3_HUMAN
Polymorphism
---
A/B
Y
158
C
32
UniProt
VAR_007056
Y
198
C
ANT3_HUMAN
Disease (AT3D)
---
A/B
Y
166
C
33
UniProt
VAR_027460
Y
198
H
ANT3_HUMAN
Disease (AT3D)
---
A/B
Y
166
H
34
UniProt
VAR_027461
S
214
F
ANT3_HUMAN
Disease (AT3D)
---
A/B
S
182
F
35
UniProt
VAR_007057
S
214
Y
ANT3_HUMAN
Disease (AT3D)
---
A/B
S
182
Y
36
UniProt
VAR_071202
I
218
N
ANT3_HUMAN
Disease (AT3D)
---
A/B
I
186
N
37
UniProt
VAR_007059
N
219
D
ANT3_HUMAN
Disease (AT3D)
---
A/B
N
187
D
38
UniProt
VAR_007058
N
219
K
ANT3_HUMAN
Disease (AT3D)
---
A/B
N
187
K
39
UniProt
VAR_027463
S
223
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
S
191
P
40
UniProt
VAR_027464
T
243
I
ANT3_HUMAN
Disease (AT3D)
---
A/B
T
211
I
41
UniProt
VAR_071203
V
248
G
ANT3_HUMAN
Disease (AT3D)
---
A/B
V
216
G
42
UniProt
VAR_027465
I
251
T
ANT3_HUMAN
Disease (AT3D)
---
A/B
I
219
T
43
UniProt
VAR_027466
W
257
R
ANT3_HUMAN
Disease (AT3D)
---
A/B
W
225
R
44
UniProt
VAR_027467
F
261
L
ANT3_HUMAN
Disease (AT3D)
---
A/B
F
229
L
45
UniProt
VAR_007060
E
269
K
ANT3_HUMAN
Disease (AT3D)
---
A/B
E
237
K
46
UniProt
VAR_007062
M
283
I
ANT3_HUMAN
Disease (AT3D)
---
A/B
M
251
I
47
UniProt
VAR_027468
M
283
V
ANT3_HUMAN
Disease (AT3D)
---
A/B
M
251
V
48
UniProt
VAR_071204
R
293
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
R
261
P
49
UniProt
VAR_007063
L
302
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
L
270
P
50
UniProt
VAR_007064
I
316
N
ANT3_HUMAN
Disease (AT3D)
---
A/B
I
284
N
51
UniProt
VAR_027469
S
323
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
S
291
P
52
UniProt
VAR_007065
E
334
K
ANT3_HUMAN
Disease (AT3D)
---
A/B
E
302
K
53
UniProt
VAR_007067
S
381
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
S
349
P
54
UniProt
VAR_007068
R
391
Q
ANT3_HUMAN
Polymorphism
---
A/B
R
359
Q
55
UniProt
VAR_027470
S
397
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
S
365
P
56
UniProt
VAR_027471
D
398
H
ANT3_HUMAN
Disease (AT3D)
---
A/B
D
366
H
57
UniProt
VAR_071205
H
401
R
ANT3_HUMAN
Disease (AT3D)
---
A/B
H
369
R
58
UniProt
VAR_027472
S
412
R
ANT3_HUMAN
Disease (AT3D)
---
A/B
S
380
R
59
UniProt
VAR_007069
A
414
T
ANT3_HUMAN
Disease (AT3D)
---
A/B
A
382
T
60
UniProt
VAR_007070
A
416
P
ANT3_HUMAN
Disease (AT3D)
28930978
A/B
A
384
P
61
UniProt
VAR_007071
A
416
S
ANT3_HUMAN
Disease (AT3D)
121909548
A/B
A
384
S
62
UniProt
VAR_007072
A
419
V
ANT3_HUMAN
Disease (AT3D)
---
A/B
A
387
V
63
UniProt
VAR_007073
G
424
D
ANT3_HUMAN
Disease (AT3D)
---
A/B
G
392
D
64
UniProt
VAR_007075
R
425
C
ANT3_HUMAN
Disease (AT3D)
121909554
A/B
R
393
C
65
UniProt
VAR_007074
R
425
H
ANT3_HUMAN
Disease (AT3D)
---
A/B
R
393
H
66
UniProt
VAR_007076
R
425
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
R
393
P
67
UniProt
VAR_007077
S
426
L
ANT3_HUMAN
Disease (AT3D)
---
A/B
S
394
L
68
UniProt
VAR_007078
F
434
C
ANT3_HUMAN
Disease (AT3D)
---
A/B
F
402
C
69
UniProt
VAR_007080
F
434
L
ANT3_HUMAN
Disease (AT3D)
---
A/B
F
402
L
70
UniProt
VAR_007079
F
434
S
ANT3_HUMAN
Disease (AT3D)
---
A/B
F
402
S
71
UniProt
VAR_007081
A
436
T
ANT3_HUMAN
Disease (AT3D)
---
A/B
A
404
T
72
UniProt
VAR_007082
N
437
K
ANT3_HUMAN
Disease (AT3D)
---
A/B
N
405
K
73
UniProt
VAR_009258
R
438
G
ANT3_HUMAN
Disease (AT3D)
---
A/B
R
406
G
74
UniProt
VAR_007083
R
438
M
ANT3_HUMAN
Disease (AT3D)
---
A/B
R
406
M
75
UniProt
VAR_071206
P
439
A
ANT3_HUMAN
Disease (AT3D)
---
A/B
P
407
A
76
UniProt
VAR_007084
P
439
L
ANT3_HUMAN
Disease (AT3D)
---
A/B
P
407
L
77
UniProt
VAR_007085
P
439
T
ANT3_HUMAN
Disease (AT3D)
---
A/B
P
407
T
78
UniProt
VAR_027473
L
441
P
ANT3_HUMAN
Disease (AT3D)
---
A/B
L
409
P
79
UniProt
VAR_007086
I
453
T
ANT3_HUMAN
Disease (AT3D)
---
A/B
I
421
T
80
UniProt
VAR_007087
G
456
R
ANT3_HUMAN
Disease (AT3D)
---
A/B
G
424
R
81
UniProt
VAR_007088
R
457
T
ANT3_HUMAN
Disease (AT3D)
---
A/B
R
425
T
82
UniProt
VAR_007090
A
459
D
ANT3_HUMAN
Disease (AT3D)
---
A/B
A
427
D
83
UniProt
VAR_007091
P
461
L
ANT3_HUMAN
Disease (AT3D)
---
A/B
P
429
L
84
UniProt
VAR_007092
C
462
F
ANT3_HUMAN
Disease (AT3D)
---
A/B
C
430
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SERPIN (A:402-412,B:402-412)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SERPIN
PS00284
Serpins signature.
ANT3_HUMAN
434-444
2
A:402-412
B:402-412
[
close PROSITE info
]
Exons
(6, 12)
Info
All Exons
Exon 1.3a (A:1-104 (gaps) | B:1-104 (gaps))
Exon 1.4c (A:105-176 (gaps) | B:105-176 (gaps...)
Exon 1.5a (A:177-222 | B:177-222)
Exon 1.6b (A:223-353 | B:223-353)
Exon 1.7a (A:353-374 | B:353-374)
Exon 1.8a (A:375-430 | B:375-431)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.3a
2: Boundary 1.3a/1.4c
3: Boundary 1.4c/1.5a
4: Boundary 1.5a/1.6b
5: Boundary 1.6b/1.7a
6: Boundary 1.7a/1.8a
7: Boundary 1.8a/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367698
1a
ENSE00001944151
chr1:
173886516-173886357
160
ANT3_HUMAN
1-14
14
0
-
-
1.3a
ENST00000367698
3a
ENSE00000814673
chr1:
173884057-173883691
367
ANT3_HUMAN
14-136
123
2
A:1-104 (gaps)
B:1-104 (gaps)
104
104
1.4c
ENST00000367698
4c
ENSE00000789910
chr1:
173881152-173880937
216
ANT3_HUMAN
137-208
72
2
A:105-176 (gaps)
B:105-176 (gaps)
72
72
1.5a
ENST00000367698
5a
ENSE00000789909
chr1:
173880029-173879892
138
ANT3_HUMAN
209-254
46
2
A:177-222
B:177-222
46
46
1.6b
ENST00000367698
6b
ENSE00000789908
chr1:
173879080-173878690
391
ANT3_HUMAN
255-385
131
2
A:223-353
B:223-353
131
131
1.7a
ENST00000367698
7a
ENSE00001383315
chr1:
173876652-173876588
65
ANT3_HUMAN
385-406
22
2
A:353-374
B:353-374
22
22
1.8a
ENST00000367698
8a
ENSE00001876994
chr1:
173873203-173872947
257
ANT3_HUMAN
407-464
58
2
A:375-430
B:375-431
56
57
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d2znha_ (A:)
1b: SCOP_d2znhb_ (B:)
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Class
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Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Serpins
(120)
Superfamily
:
Serpins
(120)
Family
:
Serpins
(100)
Protein domain
:
Antithrombin
(28)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d2znha_
A:
1b
d2znhb_
B:
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CATH Domains
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Pfam Domains
(1, 2)
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1a: PFAM_Serpin_2znhB01 (B:53-429)
1b: PFAM_Serpin_2znhB02 (B:53-429)
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no clan defined [family: Serpin]
(63)
Family
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Serpin
(63)
Homo sapiens (Human)
(41)
1a
Serpin-2znhB01
B:53-429
1b
Serpin-2znhB02
B:53-429
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