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2ZME
Asym. Unit
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Asym.Unit (111 KB)
Biol.Unit 1 (104 KB)
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(1)
Title
:
INTEGRATED STRUCTURAL AND FUNCTIONAL MODEL OF THE HUMAN ESCRT-II COMPLEX
Authors
:
Y. J. Im, J. H. Hurley
Date
:
17 Apr 08 (Deposition) - 04 Nov 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Escrt, Sorting, Mbv, Vps, Nucleus, Protein Transport, Transcription, Transcription Regulation, Transport, Endosome, Lipid-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. J. Im, J. H. Hurley
Integrated Structural Model And Membrane Targeting Mechanis Of The Human Escrt-Ii Complex
Dev. Cell V. 14 902 2008
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048940 (I76V, chain C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048940
I
76
V
VPS25_HUMAN
Polymorphism
34494804
C/D
I
76
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(9, 9)
Info
All Exons
Exon 1.7 (B:172-176)
Exon 1.9b (B:177-187)
Exon 1.10 (B:188-213)
Exon 1.11a (B:214-258)
Exon 1.12 (B:259-280)
Exon 1.13 (B:281-302)
Exon 1.14 (B:302-330)
Exon 1.15c (B:331-356)
Exon 1.16b (B:356-386)
View:
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All Exon Boundaries
01: Boundary 1.6b/1.7
02: Boundary 1.7/1.9b
03: Boundary 1.9b/1.10
04: Boundary 1.10/1.11a
05: Boundary 1.11a/1.12
06: Boundary 1.12/1.13
07: Boundary 1.13/1.14
08: Boundary 1.14/1.15c
09: Boundary 1.15c/1.16b
10: Boundary 1.16b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000378060
1b
ENSE00001826219
chr13:
53024757-53024634
124
VPS36_HUMAN
1-32
32
0
-
-
1.3
ENST00000378060
3
ENSE00000923576
chr13:
53016580-53016512
69
VPS36_HUMAN
33-55
23
0
-
-
1.4
ENST00000378060
4
ENSE00000923575
chr13:
53013303-53013233
71
VPS36_HUMAN
56-79
24
0
-
-
1.5a
ENST00000378060
5a
ENSE00000923574
chr13:
53010539-53010425
115
VPS36_HUMAN
79-117
39
0
-
-
1.6b
ENST00000378060
6b
ENSE00000923573
chr13:
53009017-53008928
90
VPS36_HUMAN
118-147
30
0
-
-
1.7
ENST00000378060
7
ENSE00000923572
chr13:
53007883-53007797
87
VPS36_HUMAN
148-176
29
1
B:172-176
5
1.9b
ENST00000378060
9b
ENSE00001001773
chr13:
53001354-53001322
33
VPS36_HUMAN
177-187
11
1
B:177-187
11
1.10
ENST00000378060
10
ENSE00000923571
chr13:
53001201-53001124
78
VPS36_HUMAN
188-213
26
1
B:188-213
26
1.11a
ENST00000378060
11a
ENSE00000923570
chr13:
53000201-53000067
135
VPS36_HUMAN
214-258
45
1
B:214-258
45
1.12
ENST00000378060
12
ENSE00000923569
chr13:
52997774-52997709
66
VPS36_HUMAN
259-280
22
1
B:259-280
22
1.13
ENST00000378060
13
ENSE00000923568
chr13:
52992191-52992127
65
VPS36_HUMAN
281-302
22
1
B:281-302
22
1.14
ENST00000378060
14
ENSE00000923567
chr13:
52991276-52991192
85
VPS36_HUMAN
302-330
29
1
B:302-330
29
1.15c
ENST00000378060
15c
ENSE00000923566
chr13:
52990228-52990152
77
VPS36_HUMAN
331-356
26
1
B:331-356
26
1.16b
ENST00000378060
16b
ENSE00001839838
chr13:
52990058-52986839
3220
VPS36_HUMAN
356-386
31
1
B:356-386
31
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2zmea1 (A:34-175)
1b: SCOP_d2zmea2 (A:176-250)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
automated matches
(118)
Protein domain
:
automated matches
(118)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d2zmea1
A:34-175
1b
d2zmea2
A:176-250
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CATH Domains
(2, 5)
Info
all CATH domains
1a: CATH_2zmeC00 (C:4-102)
1b: CATH_2zmeD00 (D:5-101)
2a: CATH_2zmeA02 (A:92-172)
2b: CATH_2zmeA03 (A:173-250)
2c: CATH_2zmeB03 (B:317-386)
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)
Organisms
(
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'Winged helix' DNA-binding domain. Chain C. Domain 1
(5)
Human (Homo sapiens)
(2)
1a
2zmeC00
C:4-102
1b
2zmeD00
D:5-101
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Human (Homo sapiens)
(70)
2a
2zmeA02
A:92-172
2b
2zmeA03
A:173-250
2c
2zmeB03
B:317-386
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_EAP30_2zmeA01 (A:34-225)
1b: PFAM_EAP30_2zmeB01 (B:172-369)
2a: PFAM_ESCRT_II_2zmeD01 (D:9-101)
2b: PFAM_ESCRT_II_2zmeD02 (D:9-101)
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Organisms
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(
)
Clan
:
no clan defined [family: EAP30]
(2)
Family
:
EAP30
(2)
Homo sapiens (Human)
(1)
1a
EAP30-2zmeA01
A:34-225
1b
EAP30-2zmeB01
B:172-369
Clan
:
no clan defined [family: ESCRT-II]
(3)
Family
:
ESCRT-II
(3)
Homo sapiens (Human)
(1)
2a
ESCRT-II-2zmeD01
D:9-101
2b
ESCRT-II-2zmeD02
D:9-101
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Asym.Unit (111 KB)
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