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2ZCT
Asym. Unit
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Asym.Unit (420 KB)
Biol.Unit 1 (414 KB)
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(1)
Title
:
OXIDATION OF ARCHAEAL PEROXIREDOXIN INVOLVES A HYPERVALENT SULFUR INTERMEDIATE
Authors
:
T. Nakamura, Y. Hagihara, M. Abe, T. Inoue, T. Yamamoto, H. Matsumura
Date
:
12 Nov 07 (Deposition) - 27 May 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Thioredoxin Fold, Peroxiredoxin, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nakamura, T. Yamamoto, M. Abe, H. Matsumura, Y. Hagihara, T. Goto, T. Yamaguchi, T. Inoue
Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate
Proc. Natl. Acad. Sci. Usa V. 105 6238 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: S-HYDROXYCYSTEINE (CSOa)
1b: S-HYDROXYCYSTEINE (CSOb)
1c: S-HYDROXYCYSTEINE (CSOc)
1d: S-HYDROXYCYSTEINE (CSOd)
1e: S-HYDROXYCYSTEINE (CSOe)
1f: S-HYDROXYCYSTEINE (CSOf)
1g: S-HYDROXYCYSTEINE (CSOg)
1h: S-HYDROXYCYSTEINE (CSOh)
1i: S-HYDROXYCYSTEINE (CSOi)
1j: S-HYDROXYCYSTEINE (CSOj)
View:
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No.
Name
Count
Type
Full Name
1
CSO
10
Mod. Amino Acid
S-HYDROXYCYSTEINE
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 10)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:6-163,B:6-163,C:6-163,D:6-163,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
TDXH_AERPE
6-163
10
A:6-163
B:6-163
C:6-163
D:6-163
E:6-163
F:6-163
G:6-163
H:6-163
I:6-163
J:6-163
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d2zcta_ (A:)
1b: SCOP_d2zctb_ (B:)
1c: SCOP_d2zctc_ (C:)
1d: SCOP_d2zctd_ (D:)
1e: SCOP_d2zcte_ (E:)
1f: SCOP_d2zctf_ (F:)
1g: SCOP_d2zctg_ (G:)
1h: SCOP_d2zcth_ (H:)
1i: SCOP_d2zcti_ (I:)
1j: SCOP_d2zctj_ (J:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
automated matches
(46)
Aeropyrum pernix [TaxId: 56636]
(1)
1a
d2zcta_
A:
1b
d2zctb_
B:
1c
d2zctc_
C:
1d
d2zctd_
D:
1e
d2zcte_
E:
1f
d2zctf_
F:
1g
d2zctg_
G:
1h
d2zcth_
H:
1i
d2zcti_
I:
1j
d2zctj_
J:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 20)
Info
all PFAM domains
1a: PFAM_AhpC_TSA_2zctJ01 (J:8-140)
1b: PFAM_AhpC_TSA_2zctJ02 (J:8-140)
1c: PFAM_AhpC_TSA_2zctJ03 (J:8-140)
1d: PFAM_AhpC_TSA_2zctJ04 (J:8-140)
1e: PFAM_AhpC_TSA_2zctJ05 (J:8-140)
1f: PFAM_AhpC_TSA_2zctJ06 (J:8-140)
1g: PFAM_AhpC_TSA_2zctJ07 (J:8-140)
1h: PFAM_AhpC_TSA_2zctJ08 (J:8-140)
1i: PFAM_AhpC_TSA_2zctJ09 (J:8-140)
1j: PFAM_AhpC_TSA_2zctJ10 (J:8-140)
2a: PFAM_1_cysPrx_C_2zctJ11 (J:160-203)
2b: PFAM_1_cysPrx_C_2zctJ12 (J:160-203)
2c: PFAM_1_cysPrx_C_2zctJ13 (J:160-203)
2d: PFAM_1_cysPrx_C_2zctJ14 (J:160-203)
2e: PFAM_1_cysPrx_C_2zctJ15 (J:160-203)
2f: PFAM_1_cysPrx_C_2zctJ16 (J:160-203)
2g: PFAM_1_cysPrx_C_2zctJ17 (J:160-203)
2h: PFAM_1_cysPrx_C_2zctJ18 (J:160-203)
2i: PFAM_1_cysPrx_C_2zctJ19 (J:160-203)
2j: PFAM_1_cysPrx_C_2zctJ20 (J:160-203)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
AhpC-TSA
(28)
Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
(3)
1a
AhpC-TSA-2zctJ01
J:8-140
1b
AhpC-TSA-2zctJ02
J:8-140
1c
AhpC-TSA-2zctJ03
J:8-140
1d
AhpC-TSA-2zctJ04
J:8-140
1e
AhpC-TSA-2zctJ05
J:8-140
1f
AhpC-TSA-2zctJ06
J:8-140
1g
AhpC-TSA-2zctJ07
J:8-140
1h
AhpC-TSA-2zctJ08
J:8-140
1i
AhpC-TSA-2zctJ09
J:8-140
1j
AhpC-TSA-2zctJ10
J:8-140
Clan
:
no clan defined [family: 1-cysPrx_C]
(19)
Family
:
1-cysPrx_C
(19)
Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
(3)
2a
1-cysPrx_C-2zctJ11
J:160-203
2b
1-cysPrx_C-2zctJ12
J:160-203
2c
1-cysPrx_C-2zctJ13
J:160-203
2d
1-cysPrx_C-2zctJ14
J:160-203
2e
1-cysPrx_C-2zctJ15
J:160-203
2f
1-cysPrx_C-2zctJ16
J:160-203
2g
1-cysPrx_C-2zctJ17
J:160-203
2h
1-cysPrx_C-2zctJ18
J:160-203
2i
1-cysPrx_C-2zctJ19
J:160-203
2j
1-cysPrx_C-2zctJ20
J:160-203
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Asym.Unit (420 KB)
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