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2Z5C
Asym. Unit
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Asym.Unit (142 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S PROTEASOME ASSEMBLY
Authors
:
H. Yashiroda, T. Mizushima, K. Okamoto, T. Kameyama, H. Hayashi, T. Kishimoto, M. Kasahara, E. Kurimoto, E. Sakata, A. Suzuki, Y. Hirano, S. Murata, K. Kato, T. Yamane, K. Tanaka
Date
:
03 Jul 07 (Deposition) - 22 Jan 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Proteasome, Chaperone, S. Cerevisiae, Chaperone/Hydrolase Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yashiroda, T. Mizushima, K. Okamoto, T. Kameyama, H. Hayashi, T. Kishimoto, S. Niwa, M. Kasahara, E. Kurimoto, E. Sakata, K. Takagi, A. Suzuki, Y. Hirano, S. Murata, K. Kato, T. Yamane, K. Tanaka
Crystal Structure Of A Chaperone Complex That Contributes To The Assembly Of Yeast 20S Proteasomes
Nat. Struct. Mol. Biol. V. 15 228 2008
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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Exons
(3, 6)
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All Exons
Exon 1.1 (C:33-250 (gaps) | F:33-250 (gaps))
Exon 2.1 (B:2-178 (gaps) | E:2-178 (gaps))
Exon 3.1 (A:4-147 (gaps) | D:4-147 (gaps))
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1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
5: Boundary -/3.1
6: Boundary 3.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YGR253C
1
YGR253C.1
VII:999145-998363
783
PSA5_YEAST
1-260
260
2
C:33-250 (gaps)
F:33-250 (gaps)
218
218
2.1
YLR021W
1
YLR021W.1
XII:183622-184161
540
POC3_YEAST
1-179
179
2
B:2-178 (gaps)
E:2-178 (gaps)
177
177
3.1
YPL144W
1
YPL144W.1
XVI:280479-280925
447
POC4_YEAST
1-148
148
2
A:4-147 (gaps)
D:4-147 (gaps)
144
144
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Pfam Domains
(2, 6)
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all PFAM domains
1a: PFAM_Proteasome_2z5cF01 (F:33-222)
1b: PFAM_Proteasome_2z5cF02 (F:33-222)
2a: PFAM_chaperone_DMP_2z5cE01 (E:2-174)
2b: PFAM_chaperone_DMP_2z5cE02 (E:2-174)
2c: PFAM_chaperone_DMP_2z5cD01 (D:4-143)
2d: PFAM_chaperone_DMP_2z5cD02 (D:4-143)
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(
)
Clan
:
NTN
(93)
Family
:
Proteasome
(36)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(13)
1a
Proteasome-2z5cF01
F:33-222
1b
Proteasome-2z5cF02
F:33-222
Clan
:
no clan defined [family: chaperone_DMP]
(2)
Family
:
chaperone_DMP
(2)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
2a
chaperone_DMP-2z5cE01
E:2-174
2b
chaperone_DMP-2z5cE02
E:2-174
2c
chaperone_DMP-2z5cD01
D:4-143
2d
chaperone_DMP-2z5cD02
D:4-143
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