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2Z2L
Biol. Unit 2
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Asym.Unit (202 KB)
Biol.Unit 1 (103 KB)
Biol.Unit 2 (99 KB)
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(1)
Title
:
PENICILLIN-BINDING PROTEIN 2X (PBP2X) FROM STREPTOCOCCUS PNEUMONIAE
Authors
:
M. Yamada, T. Watanabe, Y. Takeuchi
Date
:
23 May 07 (Deposition) - 04 Sep 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Peptidoglycan Synthesis, Cell Wall, Penicillin-Binding, Antibiotics, Biosynthetic Protein
(Keyword Search:
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Reference
:
M. Yamada, T. Watanabe, T. Miyara, N. Baba, J. Saito, Y. Takeuchi, F. Ohsawa
Crystal Structure Of Cefditoren Complexed With Streptococcus Pneumoniae Penicillin-Binding Protein 2X: Structural Basis For Its High Antimicrobial Activity
Antimicrob. Agents Chemother. V. 51 3902 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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1a: SULFATE ION (SO4a)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 4)
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1: PASTA (F:692-750)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PASTA
PS51178
PASTA domain profile.
PBPX_STRPN
632-691
692-750
2
-
F:632-691
-
F:692-750
PBPX_STRR6
632-691
692-750
2
-
F:632-691
-
F:692-750
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Exons
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SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2z2lc1 (C:626-692)
1b: SCOP_d2z2lc2 (C:693-750)
1c: SCOP_d2z2lf1 (F:626-692)
1d: SCOP_d2z2lf2 (F:693-750)
2a: SCOP_d2z2lb_ (B:)
2b: SCOP_d2z2le_ (E:)
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Protein Domains
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Penicillin-binding protein 2x (pbp-2x), c-terminal domain
(10)
Superfamily
:
Penicillin-binding protein 2x (pbp-2x), c-terminal domain
(10)
Family
:
Penicillin-binding protein 2x (pbp-2x), c-terminal domain
(10)
Protein domain
:
Penicillin-binding protein 2x (pbp-2x), c-terminal domain
(10)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(10)
1a
d2z2lc1
C:626-692
1b
d2z2lc2
C:693-750
1c
d2z2lf1
F:626-692
1d
d2z2lf2
F:693-750
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
Penicillin-binding protein 2x (pbp-2x), transpeptidase domain
(10)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(10)
2a
d2z2lb_
B:
2b
d2z2le_
E:
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CATH Domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Transpeptidase_2z2lE01 (E:289-609)
1b: PFAM_Transpeptidase_2z2lE02 (E:289-609)
2a: PFAM_PASTA_2z2lF01 (F:694-750)
2b: PFAM_PASTA_2z2lF02 (F:694-750)
3a: PFAM_PBP_dimer_2z2lD01 (D:73-232)
3b: PFAM_PBP_dimer_2z2lD02 (D:73-232)
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Clans
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Clan
:
Beta-lactamase
(210)
Family
:
Transpeptidase
(31)
Streptococcus pneumoniae
(9)
1a
Transpeptidase-2z2lE01
E:289-609
1b
Transpeptidase-2z2lE02
E:289-609
Clan
:
no clan defined [family: PASTA]
(12)
Family
:
PASTA
(12)
Streptococcus pneumoniae
(7)
2a
PASTA-2z2lF01
F:694-750
2b
PASTA-2z2lF02
F:694-750
Clan
:
no clan defined [family: PBP_dimer]
(15)
Family
:
PBP_dimer
(15)
Streptococcus pneumoniae
(7)
3a
PBP_dimer-2z2lD01
D:73-232
3b
PBP_dimer-2z2lD02
D:73-232
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Show PDB file:
Asym.Unit (202 KB)
Header - Asym.Unit
Biol.Unit 1 (103 KB)
Header - Biol.Unit 1
Biol.Unit 2 (99 KB)
Header - Biol.Unit 2
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