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2YSQ
Asym. Unit
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Asym.Unit (399 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE SH3 DOMAIN FROM RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9
Authors
:
X. R. Qin, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
03 Apr 07 (Deposition) - 09 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Sh3 Domain; Cdc42 Guanine Nucleotide Exchange Factor (Gef) 9, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Signaling Protein
(Keyword Search:
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Reference
:
X. R. Qin, F. Hayashi, S. Yokoyama
Solution Structure Of The Sh3 Domain From Rho Guanine Nucleotide Exchange Factor 9
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_028752 (G55A, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_028752
G
55
A
ARHG9_HUMAN
Disease (EIEE8)
---
A
G
55
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:8-67)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
ARHG9_HUMAN
8-67
1
A:8-67
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Exons
(3, 3)
Info
All Exons
Exon 1.2b (A:1-3)
Exon 1.4 (A:4-63)
Exon 1.5 (A:64-81 (gaps))
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All Exon Boundaries
1: Boundary -/1.2b
2: Boundary 1.2b/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000253401
2b
ENSE00001865551
X:62974993-62974184
810
ARHG9_HUMAN
1-3
3
1
A:1-3
3
1.4
ENST00000253401
4
ENSE00001769376
X:62944591-62944412
180
ARHG9_HUMAN
4-63
60
1
A:4-63
60
1.5
ENST00000253401
5
ENSE00001698744
X:62926329-62926138
192
ARHG9_HUMAN
64-127
64
1
A:64-81 (gaps)
31
1.8
ENST00000253401
8
ENSE00001801635
X:62917184-62917005
180
ARHG9_HUMAN
128-187
60
0
-
-
1.9
ENST00000253401
9
ENSE00001618937
X:62898452-62898220
233
ARHG9_HUMAN
188-265
78
0
-
-
1.10a
ENST00000253401
10a
ENSE00000671866
X:62894047-62893918
130
ARHG9_HUMAN
265-308
44
0
-
-
1.11
ENST00000253401
11
ENSE00000869084
X:62885897-62885766
132
ARHG9_HUMAN
309-352
44
0
-
-
1.12
ENST00000253401
12
ENSE00000897813
X:62875617-62875374
244
ARHG9_HUMAN
353-434
82
0
-
-
1.13c
ENST00000253401
13c
ENSE00000869082
X:62863928-62863860
69
ARHG9_HUMAN
434-457
24
0
-
-
1.14d
ENST00000253401
14d
ENSE00001844608
X:62858089-62854847
3243
ARHG9_HUMAN
457-516
60
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ysqa_ (A:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
automated matches
(114)
Protein domain
:
automated matches
(114)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d2ysqa_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SH3_1_2ysqA01 (A:14-59)
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Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-2ysqA01
A:14-59
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