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2Y4N
Asym. Unit
Info
Asym.Unit (156 KB)
Biol.Unit 1 (150 KB)
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(1)
Title
:
PAAK1 IN COMPLEX WITH PHENYLACETYL ADENYLATE
Authors
:
A. Law, M. J. Boulanger
Date
:
07 Jan 11 (Deposition) - 01 Mar 11 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ligase, Phenylacetic Acid Degradation Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Law, M. J. Boulanger
Defining A Structural And Kinetic Rationale For Paralogous Copies Of Phenylacetate-Coa Ligases From The Cystic Fibrosi Pathogen Burkholderia Cenocepacia J2315.
J. Biol. Chem. V. 286 15577 2011
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Hetero Components
(6, 12)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
2a: 5'-O-[HYDROXY(PHENYLACETYL)PHOSPHO... (DLLa)
2b: 5'-O-[HYDROXY(PHENYLACETYL)PHOSPHO... (DLLb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: 2-PHENYLACETIC ACID (PACa)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
6a: TRIETHYLENE GLYCOL (PGEa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BME
3
Ligand/Ion
BETA-MERCAPTOETHANOL
2
DLL
2
Ligand/Ion
5'-O-[HYDROXY(PHENYLACETYL)PHOSPHORYL]ADENOSINE
3
MG
4
Ligand/Ion
MAGNESIUM ION
4
PAC
1
Ligand/Ion
2-PHENYLACETIC ACID
5
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:350 , LEU A:353 , HOH A:812 , HOH A:778 , HOH A:748 , HOH A:930
BINDING SITE FOR RESIDUE MG A 1432
02
AC2
SOFTWARE
VAL A:203 , SER A:205 , HOH A:964 , HOH A:616
BINDING SITE FOR RESIDUE MG A 1433
03
AC3
SOFTWARE
ASN A:219 , ARG A:222 , LYS A:255 , ASP A:256 , GLY A:257 , LEU A:310 , GLU A:321 , LYS A:322 , HOH A:765 , HOH A:836
BINDING SITE FOR RESIDUE PEG A 1434
04
AC4
SOFTWARE
ARG A:228 , ALA A:354 , CYS A:377 , HOH A:805
BINDING SITE FOR RESIDUE BME A 1435
05
AC5
SOFTWARE
TYR A:136 , PHE A:141 , THR A:142 , GLY A:143 , ALA A:214 , GLU A:215 , PRO A:216 , ASP A:235 , ILE A:236 , TYR A:237 , GLY A:238 , LEU A:239 , SER A:240 , PRO A:245 , ASP A:305 , ARG A:326 , LYS A:422 , HOH A:877 , HOH A:605 , HOH A:651 , HOH A:632 , HOH A:714
BINDING SITE FOR RESIDUE DLL A 1436
06
AC6
SOFTWARE
GLN B:350 , ARG B:351 , LEU B:353 , HOH B:758 , HOH B:711 , HOH B:650 , HOH B:802
BINDING SITE FOR RESIDUE MG B 1431
07
AC7
SOFTWARE
VAL B:203 , SER B:205 , LEU B:207 , HOH B:846 , HOH B:644 , HOH B:731 , HOH B:715
BINDING SITE FOR RESIDUE MG B 1432
08
AC8
SOFTWARE
SER B:94 , BME B:505 , HOH B:757 , HOH B:782 , HOH B:771
BINDING SITE FOR RESIDUE PAC B 1433
09
AC9
SOFTWARE
ALA B:47 , SER B:61 , ARG B:62 , PHE B:63
BINDING SITE FOR RESIDUE PGE B 1434
10
BC1
SOFTWARE
HOH A:740 , ALA B:92 , GLY B:139 , LEU B:140 , PHE B:141 , PAC B:503 , HOH B:801
BINDING SITE FOR RESIDUE BME B 1435
11
BC2
SOFTWARE
GLU B:196 , ARG B:228 , ALA B:354 , CYS B:377 , HOH B:694
BINDING SITE FOR RESIDUE BME B 1436
12
BC3
SOFTWARE
SER B:93 , PHE B:141 , THR B:142 , GLY B:143 , ALA B:214 , GLU B:215 , PRO B:216 , ASP B:235 , ILE B:236 , TYR B:237 , GLY B:238 , LEU B:239 , SER B:240 , PRO B:245 , ASP B:305 , ILE B:323 , ARG B:326 , LYS B:422 , HOH B:696 , HOH B:636 , HOH B:616
BINDING SITE FOR RESIDUE DLL D 1437
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_AMP_binding_2y4nB01 (B:63-355)
1b: PFAM_AMP_binding_2y4nB02 (B:63-355)
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Clan
:
ANL
(32)
Family
:
AMP-binding
(32)
Burkholderia cepacia (strain J2315 / LMG 16656) (Burkholderia cenocepacia (strain J2315))
(3)
1a
AMP-binding-2y4nB01
B:63-355
1b
AMP-binding-2y4nB02
B:63-355
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Asymmetric Unit 1
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