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2Y0E
Asym. Unit
Info
Asym.Unit (629 KB)
Biol.Unit 1 (312 KB)
Biol.Unit 2 (313 KB)
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(1)
Title
:
BCEC AND THE FINAL STEP OF UGDS REACTION
Authors
:
J. Rocha, A. O. Popescu, P. Borges, D. Mil-Homens, I. Sa-Correia, A. M. F C. Frazao
Date
:
02 Dec 10 (Deposition) - 27 Jul 11 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: C,D (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Oxidoreductase, Carbohydrate Synthesis, Exopolysaccharide, Cystic Fibrosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Rocha, A. O. Popescu, P. Borges, D. Mil-Homens, L. M. Moreira, I. Sa-Correia, A. M. Fialho, C. Frazao
Structure Of Burkholderia Cepacia Udp-Glucose Dehydrogenase (Ugd) Bcec And Role Of Tyr10 In Final Hydrolysis Of Ugd Thioester Intermediate.
J. Bacteriol. V. 193 3978 2011
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 28)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
4a: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAa)
4b: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAb)
4c: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAc)
4d: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ... (UGAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
GOL
6
Ligand/Ion
GLYCEROL
3
SO4
14
Ligand/Ion
SULFATE ION
4
UGA
4
Ligand/Ion
URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:10 , GLU A:154 , PHE A:155 , LEU A:156 , GLU A:158 , LYS A:214 , ASN A:218 , ILE A:225 , PHE A:259 , LEU A:260 , TYR A:261 , GLY A:265 , TYR A:266 , GLY A:267 , CYS A:270 , PHE A:271 , PHE A:330 , LYS A:331 , ARG A:431 , HOH A:2013 , HOH A:2141 , HOH A:2167 , HOH A:2218 , HOH A:2297 , HOH A:2340 , HOH A:2341 , HOH A:2370 , HOH A:2371 , HOH A:2372 , HOH A:2373 , ARG B:254
BINDING SITE FOR RESIDUE UGA A 501
02
AC2
SOFTWARE
ARG A:338 , ARG A:343 , HOH A:2374 , HOH A:2375
BINDING SITE FOR RESIDUE SO4 A1460
03
AC3
SOFTWARE
ARG A:246 , ARG A:247 , HOH A:2376 , HIS C:199
BINDING SITE FOR RESIDUE SO4 A1461
04
AC4
SOFTWARE
ARG A:185 , LYS A:189 , TYR A:204 , ARG D:185 , GLU D:186 , LYS D:189
BINDING SITE FOR RESIDUE SO4 A1462
05
AC5
SOFTWARE
PHE A:165 , PRO A:168 , ILE A:171 , PHE A:195 , HOH A:2182 , HOH A:2377
BINDING SITE FOR RESIDUE ACT A1463
06
AC6
SOFTWARE
PHE A:113 , MET A:146 , ARG A:183 , HOH A:2157
BINDING SITE FOR RESIDUE GOL A1464
07
AC7
SOFTWARE
ARG A:208 , HIS A:285 , HOH A:2146 , HOH A:2378
BINDING SITE FOR RESIDUE GOL A1465
08
AC8
SOFTWARE
TYR A:257 , HIS A:258 , PHE A:259 , TYR A:261 , HOH A:2379 , HOH A:2380
BINDING SITE FOR RESIDUE GOL A1466
09
AC9
SOFTWARE
ARG A:254 , TYR B:10 , GLU B:154 , PHE B:155 , LEU B:156 , GLU B:158 , LYS B:214 , ASN B:218 , ILE B:225 , PHE B:259 , LEU B:260 , TYR B:261 , GLY B:265 , TYR B:266 , GLY B:267 , CYS B:270 , PHE B:271 , PHE B:330 , LYS B:331 , ARG B:431 , HOH B:2146 , HOH B:2232 , HOH B:2285 , HOH B:2316 , HOH B:2317 , HOH B:2318 , HOH B:2319 , HOH B:2320 , HOH B:2321 , HOH B:2322 , HOH B:2323 , HOH B:2324 , HOH B:2325
BINDING SITE FOR RESIDUE UGA B 501
10
BC1
SOFTWARE
ARG B:355 , HOH B:2245 , HIS C:378 , PRO C:379 , SER C:380
BINDING SITE FOR RESIDUE SO4 B1458
11
BC2
SOFTWARE
HIS B:258 , TYR B:261 , HOH B:2326 , HOH B:2327 , ASN D:198
BINDING SITE FOR RESIDUE SO4 B1459
12
BC3
SOFTWARE
ARG B:304 , GLU B:348 , ARG B:352
BINDING SITE FOR RESIDUE SO4 B1460
13
BC4
SOFTWARE
ARG B:185 , GLU B:186 , LYS B:189 , ARG C:185 , LYS C:189
BINDING SITE FOR RESIDUE SO4 B1461
14
BC5
SOFTWARE
ARG B:343 , HOH B:2328 , HOH B:2329
BINDING SITE FOR RESIDUE SO4 B1462
15
BC6
SOFTWARE
PHE B:165 , PRO B:168 , ILE B:171 , PHE B:195 , HOH B:2124 , HOH B:2330
BINDING SITE FOR RESIDUE ACT B1463
16
BC7
SOFTWARE
GLU C:154 , PHE C:155 , LEU C:156 , LYS C:214 , ASN C:218 , ILE C:225 , PHE C:259 , LEU C:260 , TYR C:261 , TYR C:266 , GLY C:267 , CYS C:270 , PHE C:271 , PHE C:330 , LYS C:331 , ARG C:431 , HOH C:2072 , HOH C:2111 , HOH C:2142 , HOH C:2188 , HOH C:2252 , HOH C:2253 , HOH C:2279 , HOH C:2280 , HOH C:2281 , HOH C:2282 , HOH C:2283 , HOH C:2284 , ARG D:254
BINDING SITE FOR RESIDUE UGA C 501
17
BC8
SOFTWARE
HIS A:199 , ARG C:246 , ARG C:247 , HOH C:2285
BINDING SITE FOR RESIDUE SO4 C1458
18
BC9
SOFTWARE
ARG C:338 , ARG C:343 , HOH C:2286
BINDING SITE FOR RESIDUE SO4 C1459
19
CC1
SOFTWARE
GLY C:112 , PHE C:113 , ARG C:183
BINDING SITE FOR RESIDUE SO4 C1460
20
CC2
SOFTWARE
PHE C:165 , PRO C:168 , ILE C:171 , PHE C:195 , HOH C:2083 , HOH C:2287
BINDING SITE FOR RESIDUE ACT C1461
21
CC3
SOFTWARE
TYR C:257 , HIS C:258 , PHE C:259 , TYR C:261 , HOH C:2288
BINDING SITE FOR RESIDUE GOL C1462
22
CC4
SOFTWARE
GLU C:406 , HOH C:2265 , HOH C:2289
BINDING SITE FOR RESIDUE GOL C1463
23
CC5
SOFTWARE
ARG C:254 , GLU D:154 , PHE D:155 , LEU D:156 , GLU D:158 , LYS D:214 , ASN D:218 , ILE D:225 , PHE D:259 , LEU D:260 , TYR D:261 , GLY D:265 , TYR D:266 , GLY D:267 , CYS D:270 , PHE D:271 , PHE D:330 , LYS D:331 , ARG D:431 , HOH D:2147 , HOH D:2203 , HOH D:2229 , HOH D:2278 , HOH D:2327 , HOH D:2328 , HOH D:2363 , HOH D:2364 , HOH D:2365 , HOH D:2366 , HOH D:2367 , HOH D:2368 , HOH D:2369
BINDING SITE FOR RESIDUE UGA D 501
24
CC6
SOFTWARE
ASN B:198 , HIS D:258 , TYR D:261 , HOH D:2370 , HOH D:2371
BINDING SITE FOR RESIDUE SO4 D1459
25
CC7
SOFTWARE
ARG D:343 , HOH D:2372 , HOH D:2373
BINDING SITE FOR RESIDUE SO4 D1460
26
CC8
SOFTWARE
LYS A:140 , GLY D:443 , ARG D:455 , GLN D:456
BINDING SITE FOR RESIDUE SO4 D1461
27
CC9
SOFTWARE
PHE D:165 , PRO D:168 , PHE D:195 , HOH D:2374
BINDING SITE FOR RESIDUE ACT D1462
28
DC1
SOFTWARE
GLY D:112 , PHE D:113 , ARG D:183
BINDING SITE FOR RESIDUE GOL D1463
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Info
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[
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Exons
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Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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