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Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
TAB2 NZF DOMAIN IN COMPLEX WITH LYS63-LINKED TRI-UBIQUITIN, P212121
Authors
:
Y. Kulathu, M. Akutsu, A. Bremm, K. Hofmann, D. Komander
Date
:
30 Oct 09 (Deposition) - 24 Nov 09 (Release) - 11 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Protein Binding, Isopeptide Bond, Nzf Domain, Zinc-Finger, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kulathu, M. Akutsu, A. Bremm, K. Hofmann, D. Komander
Two-Sided Ubiquitin Binding Explains Specificity Of The Tab2 Nzf Domain
Nat. Struct. Mol. Biol. V. 16 1328 2009
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS C:670 , ALA C:672 , CYS C:673 , CYS C:684 , CYS C:687
BINDING SITE FOR RESIDUE ZN C1694
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:1-72,B:1-70,A:1-72,B:1-70,-|-|-|...)
2: UBIQUITIN_1 (A:27-52,B:27-52,A:27-52,B:27-52,-|...)
3: ZF_RANBP2_1 (C:668-687)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RS27A_BOVIN
1-76
2
A:1-72
B:1-70
RL40_BOVIN
1-76
2
A:1-72
B:1-70
UBB_BOVIN
1-76
77-152
153-228
229-304
2
-
-
-
A:1-72
B:1-70
UBC_BOVIN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
2
-
-
-
-
-
-
-
-
A:1-72
B:1-70
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RS27A_BOVIN
27-52
2
A:27-52
B:27-52
RL40_BOVIN
27-52
2
A:27-52
B:27-52
UBB_BOVIN
27-52
103-128
179-204
255-280
2
-
-
-
A:27-52
B:27-52
UBC_BOVIN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
2
-
-
-
-
-
-
-
-
A:27-52
B:27-52
3
ZF_RANBP2_1
PS01358
Zinc finger RanBP2-type signature.
TAB2_HUMAN
668-687
1
C:668-687
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Exons
(1, 1)
Info
All Exons
Exon 1.12d (C:664-693)
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All Exon Boundaries
1: Boundary 1.11/1.12d
2: Boundary 1.12d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000367456
3
ENSE00001444547
chr6:
149642188-149642526
339
TAB2_HUMAN
-
0
0
-
-
1.4a
ENST00000367456
4a
ENSE00001444546
chr6:
149663821-149663969
149
TAB2_HUMAN
-
0
0
-
-
1.7
ENST00000367456
7
ENSE00002197520
chr6:
149691045-149691235
191
TAB2_HUMAN
1-34
34
0
-
-
1.8
ENST00000367456
8
ENSE00002151893
chr6:
149699154-149700654
1501
TAB2_HUMAN
35-535
501
0
-
-
1.10a
ENST00000367456
10a
ENSE00002189492
chr6:
149718740-149718900
161
TAB2_HUMAN
535-588
54
0
-
-
1.10c
ENST00000367456
10c
ENSE00002185139
chr6:
149719105-149719198
94
TAB2_HUMAN
589-620
32
0
-
-
1.11
ENST00000367456
11
ENSE00002154375
chr6:
149720240-149720320
81
TAB2_HUMAN
620-647
28
0
-
-
1.12d
ENST00000367456
12d
ENSE00001444545
chr6:
149730713-149732749
2037
TAB2_HUMAN
647-693
47
1
C:664-693
30
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SCOP Domains
(0, 0)
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2wx1A00 (A:1-72)
1b: CATH_2wx1B00 (B:1-70)
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(
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)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
[unclassified]
(11)
1a
2wx1A00
A:1-72
1b
2wx1B00
B:1-70
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_ubiquitin_2wx1B01 (B:6-70)
1b: PFAM_ubiquitin_2wx1B02 (B:6-70)
2a: PFAM_zf_RanBP_2wx1C01 (C:664-692)
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)
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)
Clan
:
Ubiquitin
(279)
Family
:
ubiquitin
(99)
Bos taurus (Bovine)
(12)
1a
ubiquitin-2wx1B01
B:6-70
1b
ubiquitin-2wx1B02
B:6-70
Clan
:
Zn_Beta_Ribbon
(109)
Family
:
zf-RanBP
(6)
Homo sapiens (Human)
(5)
2a
zf-RanBP-2wx1C01
C:664-692
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