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Asym. Unit
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Asym.Unit (226 KB)
Biol.Unit 1 (217 KB)
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(1)
Title
:
YEAST RRP44 NUCLEASE
Authors
:
J. Basquin, F. Bonneau, J. Ebert, E. Lorentzen, E. Conti
Date
:
03 Aug 09 (Deposition) - 10 Nov 09 (Release) - 30 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,J
Biol. Unit 1: A,B,J (1x)
Keywords
:
Exosome, Nucleus, Nuclease, Hydrolase, Rna-Binding, Exonuclease, Rna Binding, Mitochondrion, Rrna Processing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Bonneau, J. Basquin, J. Ebert, E. Lorentzen, E. Conti
The Yeast Exosome Functions As A Macromolecular Cage To Channel Rna Substrates For Degradation.
Cell(Cambridge, Mass. ) V. 139 547 2009
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:32 , PRO B:33 , HIS B:34 , ALA B:35
BINDING SITE FOR RESIDUE CL B1240
2
AC2
SOFTWARE
ILE J:280 , PHE J:285 , ALA J:310 , CYS J:430
BINDING SITE FOR RESIDUE GOL J2002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: RIBONUCLEASE_II (J:831-855)
2: S1 (J:904-1001)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBONUCLEASE_II
PS01175
Ribonuclease II family signature.
RRP44_YEAST
831-855
1
J:831-855
2
S1
PS50126
S1 domain profile.
RRP44_YEAST
904-1001
1
J:904-1001
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2wp8b2 (B:153-239)
2a: SCOP_d2wp8b1 (B:3-152)
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Classes
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ribonuclease PH domain 2-like
(52)
Superfamily
:
Ribonuclease PH domain 2-like
(52)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d2wp8b2
B:153-239
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
2a
d2wp8b1
B:3-152
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(4, 6)
Info
all PFAM domains
1a: PFAM_PIN_4_2wp8J01 (J:88-211)
2a: PFAM_RNase_PH_2wp8B01 (B:21-153)
2b: PFAM_RNase_PH_2wp8A01 (A:32-165)
3a: PFAM_RNB_2wp8J02 (J:531-863)
4a: PFAM_RNase_PH_C_2wp8B02 (B:156-220)
4b: PFAM_RNase_PH_C_2wp8A02 (A:191-271)
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Clans
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Clan
:
PIN
(27)
Family
:
PIN_4
(1)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
1a
PIN_4-2wp8J01
J:88-211
Clan
:
S5
(103)
Family
:
RNase_PH
(9)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
2a
RNase_PH-2wp8B01
B:21-153
2b
RNase_PH-2wp8A01
A:32-165
Clan
:
no clan defined [family: RNB]
(4)
Family
:
RNB
(4)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
3a
RNB-2wp8J02
J:531-863
Clan
:
no clan defined [family: RNase_PH_C]
(9)
Family
:
RNase_PH_C
(9)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
4a
RNase_PH_C-2wp8B02
B:156-220
4b
RNase_PH_C-2wp8A02
A:191-271
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Asymmetric Unit 1
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