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Asym. Unit
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Asym.Unit (227 KB)
Biol.Unit 1 (220 KB)
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(1)
Title
:
THE STRUCTURE OF METHANOTHERMOBACTER THERMAUTOTROPHICUS EXOSOME CORE ASSEMBLY
Authors
:
C. L. Ng, D. G. Waterman, A. A. Antson, M. Ortiz-Lombardia
Date
:
19 Jul 09 (Deposition) - 28 Apr 10 (Release) - 30 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Phosphate Binding, 3'-5' Exoribonuclease, Exosome, Nuclease, Hydrolase, Exonuclease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. L. Ng, D. G. Waterman, A. A. Antson, M. Ortiz-Lombardia
Structure Of The Methanothermobacter Thermautotrophicus Exosome Rnase Ph Ring
Acta Crystallogr. , Sect. D V. 66 522 2010
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
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No.
Name
Count
Type
Full Name
1
PO4
3
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG B:97 , GLY B:135 , THR B:136 , ARG B:137
BINDING SITE FOR RESIDUE PO4 B1237
2
AC2
SOFTWARE
ARG F:97 , GLY F:134 , GLY F:135 , THR F:136 , ARG F:137 , HOH F:2025 , HOH F:2026 , HOH F:2027
BINDING SITE FOR RESIDUE PO4 F1238
3
AC3
SOFTWARE
ARG D:97 , GLY D:135 , THR D:136 , ARG D:137
BINDING SITE FOR RESIDUE PO4 D1237
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2wnra2 (A:188-269)
1b: SCOP_d2wnrb2 (B:154-236)
1c: SCOP_d2wnrc2 (C:188-270)
1d: SCOP_d2wnrd2 (D:154-236)
1e: SCOP_d2wnre2 (E:188-270)
1f: SCOP_d2wnrf2 (F:154-237)
2a: SCOP_d2wnra1 (A:9-187)
2b: SCOP_d2wnrb1 (B:15-153)
2c: SCOP_d2wnrc1 (C:13-187)
2d: SCOP_d2wnrd1 (D:16-153)
2e: SCOP_d2wnre1 (E:21-187)
2f: SCOP_d2wnrf1 (F:14-153)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ribonuclease PH domain 2-like
(52)
Superfamily
:
Ribonuclease PH domain 2-like
(52)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Methanothermobacter thermautotrophicus [TaxId: 145262]
(1)
1a
d2wnra2
A:188-269
1b
d2wnrb2
B:154-236
1c
d2wnrc2
C:188-270
1d
d2wnrd2
D:154-236
1e
d2wnre2
E:188-270
1f
d2wnrf2
F:154-237
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Methanothermobacter thermautotrophicus [TaxId: 145262]
(1)
2a
d2wnra1
A:9-187
2b
d2wnrb1
B:15-153
2c
d2wnrc1
C:13-187
2d
d2wnrd1
D:16-153
2e
d2wnre1
E:21-187
2f
d2wnrf1
F:14-153
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CATH Domains
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Pfam Domains
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