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2WNO
Asym. Unit
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Asym.Unit (49 KB)
Biol.Unit 1 (43 KB)
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(1)
Title
:
X-RAY STRUCTURE OF CUB_C DOMAIN FROM TSG-6
Authors
:
D. C. Briggs, A. J. Day
Date
:
13 Jul 09 (Deposition) - 01 Sep 10 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycoprotein, Cell Adhesion, Extracellular Matrix
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Briggs, H. L. Birchenough, T. Ali, M. S. Rugg, J. P. Waltho, E. Ievoli, T. A. Jowitt, J. J. Enghild, R. P. Richter, A. Salustri, C. M. Milner, A. J. Day
Metal Ion-Dependent Heavy Chain Transfer Activity Of Tsg-6 Mediates Assembly Of The Cumulus-Oocyte Matrix.
J. Biol. Chem. V. 290 28708 2015
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: COBALT (II) ION (COa)
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
CO
1
Ligand/Ion
COBALT (II) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:203 , HOH A:2102 , HOH A:2103 , HOH A:2104
BINDING SITE FOR RESIDUE CO A 1250
2
AC2
SOFTWARE
GLU A:183 , ASP A:191 , ASP A:232 , SER A:234 , VAL A:235 , HOH A:2028
BINDING SITE FOR RESIDUE CA A 1251
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_013005 (Q144R, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013005
Q
144
R
TSG6_HUMAN
Polymorphism
1046668
A
Q
144
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CUB (A:135-247)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CUB
PS01180
CUB domain profile.
TSG6_HUMAN
135-247
1
A:135-247
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Exons
(4, 4)
Info
All Exons
Exon 1.3a (A:131-132)
Exon 1.4 (A:132-208)
Exon 1.5a (A:208-222)
Exon 1.6 (A:222-249)
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All Exon Boundaries
1: Boundary 1.2/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.5a
4: Boundary 1.5a/1.6
5: Boundary 1.6/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000243347
1
ENSE00000840475
chr2:
152214106-152214274
169
TSG6_HUMAN
1-32
32
0
-
-
1.2
ENST00000243347
2
ENSE00000840476
chr2:
152220457-152220594
138
TSG6_HUMAN
32-78
47
0
-
-
1.3a
ENST00000243347
3a
ENSE00000840477
chr2:
152222570-152222731
162
TSG6_HUMAN
78-132
55
1
A:131-132
2
1.4
ENST00000243347
4
ENSE00000840478
chr2:
152226534-152226762
229
TSG6_HUMAN
132-208
77
1
A:132-208
77
1.5a
ENST00000243347
5a
ENSE00000840479
chr2:
152230063-152230103
41
TSG6_HUMAN
208-222
15
1
A:208-222
15
1.6
ENST00000243347
6
ENSE00001217763
chr2:
152235878-152236560
683
TSG6_HUMAN
222-277
56
1
A:222-249
28
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_CUB_2wnoA01 (A:135-244)
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Clans
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)
(
)
Clan
:
CUB
(11)
Family
:
CUB
(11)
Homo sapiens (Human)
(8)
1a
CUB-2wnoA01
A:135-244
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Chain A
Asymmetric Unit 1
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