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2VX3
Biol. Unit 2
Info
Asym.Unit (246 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (63 KB)
Biol.Unit 3 (61 KB)
Biol.Unit 4 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE 1A
Authors
:
A. K. Roos, M. Soundararajan, A. C. W. Pike, O. Fedorov, O. King, N. Burge C. Philips, P. Filippakopoulos, C. H. Arrowsmith, M. Wikstrom, A. Edw F. Von Delft, C. Bountra, S. Knapp
Date
:
30 Jun 08 (Deposition) - 16 Sep 08 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Serine/Threonine-Protein Kinase, Minibrain Homolog, Nucleotide-Binding, Transferase, Phosphoprotein, Tyrosine-Protein Kinase, Casp8, Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Soundararajan, A. K. Roos, P. Savitsky, P. Filippakopoulos, A. N. Kettenbach, J. V. Olsen, S. A. Gerber, J. Eswaran, S. Knapp, J. M. Elkins
Structures Of Down Syndrome Kinases, Dyrks, Reveal Mechanisms Of Kinase Activation And Substrate Recognition.
Structure V. 21 986 2013
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: N-(5-{[(2S)-4-AMINO-2-(3-CHLOROPHE... (D15a)
2b: N-(5-{[(2S)-4-AMINO-2-(3-CHLOROPHE... (D15b)
2c: N-(5-{[(2S)-4-AMINO-2-(3-CHLOROPHE... (D15c)
2d: N-(5-{[(2S)-4-AMINO-2-(3-CHLOROPHE... (D15d)
3a: HEXAETHYLENE GLYCOL (P6Ga)
3b: HEXAETHYLENE GLYCOL (P6Gb)
3c: HEXAETHYLENE GLYCOL (P6Gc)
3d: HEXAETHYLENE GLYCOL (P6Gd)
3e: HEXAETHYLENE GLYCOL (P6Ge)
3f: HEXAETHYLENE GLYCOL (P6Gf)
3g: HEXAETHYLENE GLYCOL (P6Gg)
3h: HEXAETHYLENE GLYCOL (P6Gh)
4a: O-PHOSPHOTYROSINE (PTRa)
4b: O-PHOSPHOTYROSINE (PTRb)
4c: O-PHOSPHOTYROSINE (PTRc)
4d: O-PHOSPHOTYROSINE (PTRd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
D15
1
Ligand/Ion
N-(5-{[(2S)-4-AMINO-2-(3-CHLOROPHENYL)BUTANOYL]AMINO}-1H-INDAZOL-3-YL)BENZAMIDE
3
P6G
3
Ligand/Ion
HEXAETHYLENE GLYCOL
4
PTR
1
Mod. Amino Acid
O-PHOSPHOTYROSINE
5
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC1 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC3 (SOFTWARE)
08: CC6 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
ILE B:165 , GLY B:166 , GLY B:168 , GLY B:171 , GLN B:172 , VAL B:173 , ALA B:186 , LYS B:188 , GLU B:239 , LEU B:241 , SER B:242 , ASN B:292 , LEU B:294 , ASP B:307 , CL B:620 , P6G B:700 , SO4 B:1482 , ARG D:179
BINDING SITE FOR RESIDUE D15 B 600
02
AC7
SOFTWARE
LYS B:188 , ASP B:307 , D15 B:600
BINDING SITE FOR RESIDUE CL B 620
03
AC8
SOFTWARE
ASP B:162 , LYS B:175 , MET B:240 , D15 B:600
BINDING SITE FOR RESIDUE P6G B 700
04
AC9
SOFTWARE
GLN B:201 , HIS B:227 , GLN D:201 , LEU D:234
BINDING SITE FOR RESIDUE P6G B 701
05
BC1
SOFTWARE
ASP B:247 , ASN B:251 , GLU D:160
BINDING SITE FOR RESIDUE P6G B 702
06
CC2
SOFTWARE
SER B:169 , LYS B:289 , D15 B:600
BINDING SITE FOR RESIDUE SO4 B1482
07
CC3
SOFTWARE
ASN B:365 , GLU B:366 , LYS B:393 , ARG D:300
BINDING SITE FOR RESIDUE SO4 B1483
08
CC6
SOFTWARE
LYS B:264 , ARG B:300 , SER B:301
BINDING SITE FOR RESIDUE SO4 B1484
09
CC7
SOFTWARE
HIS B:424 , LYS B:453
BINDING SITE FOR RESIDUE CL B1485
10
CC8
SOFTWARE
ARG B:325
BINDING SITE FOR RESIDUE CL D1484
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_009395 (Y415F, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_009395
Y
415
F
DYR1A_HUMAN
Polymorphism
---
B
Y
415
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (B:165-188)
2: PROTEIN_KINASE_ST (B:283-295)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
DYR1A_HUMAN
165-188
1
-
B:165-188
-
-
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
DYR1A_HUMAN
283-295
1
-
B:283-295
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Pkinase_2vx3D01 (D:159-479)
1b: PFAM_Pkinase_2vx3D02 (D:159-479)
1c: PFAM_Pkinase_2vx3D03 (D:159-479)
1d: PFAM_Pkinase_2vx3D04 (D:159-479)
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Organisms
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)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-2vx3D01
D:159-479
1b
Pkinase-2vx3D02
D:159-479
1c
Pkinase-2vx3D03
D:159-479
1d
Pkinase-2vx3D04
D:159-479
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Chain B
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (246 KB)
Header - Asym.Unit
Biol.Unit 1 (65 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
Biol.Unit 3 (61 KB)
Header - Biol.Unit 3
Biol.Unit 4 (61 KB)
Header - Biol.Unit 4
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