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2VQG
Asym. Unit
Info
Asym.Unit (135 KB)
Biol.Unit 1 (18 KB)
Biol.Unit 2 (18 KB)
Biol.Unit 3 (18 KB)
Biol.Unit 4 (17 KB)
Biol.Unit 5 (19 KB)
Biol.Unit 6 (17 KB)
Biol.Unit 7 (18 KB)
Biol.Unit 8 (18 KB)
Biol.Unit 9 (17 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PORB FROM CORYNEBACTERIUM GLUTAMICUM ( CRYSTAL FORM I)
Authors
:
K. Ziegler, R. Benz, G. E. Schulz
Date
:
15 Mar 08 (Deposition) - 20 May 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Keywords
:
Transmembrane, Membrane Protein, Porin, Membrane, Transport, Ion Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Ziegler, R. Benz, G. E. Schulz
A Putative Alpha-Helical Porin From Corynebacterium Glutamicum.
J. Mol. Biol. V. 379 482 2008
[
close entry info
]
Hetero Components
(5, 61)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
2c: CACODYLATE ION (CACc)
2d: CACODYLATE ION (CACd)
2e: CACODYLATE ION (CACe)
2f: CACODYLATE ION (CACf)
2g: CACODYLATE ION (CACg)
2h: CACODYLATE ION (CACh)
2i: CACODYLATE ION (CACi)
2j: CACODYLATE ION (CACj)
2k: CACODYLATE ION (CACk)
2l: CACODYLATE ION (CACl)
2m: CACODYLATE ION (CACm)
3a: 3,6,9,12,15,18,21,24,27-NONAOXAHEP... (GVTa)
4a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
4b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
4c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
5a: ZINC ION (ZNa)
5aa: ZINC ION (ZNaa)
5ab: ZINC ION (ZNab)
5ac: ZINC ION (ZNac)
5ad: ZINC ION (ZNad)
5ae: ZINC ION (ZNae)
5af: ZINC ION (ZNaf)
5ag: ZINC ION (ZNag)
5ah: ZINC ION (ZNah)
5ai: ZINC ION (ZNai)
5aj: ZINC ION (ZNaj)
5ak: ZINC ION (ZNak)
5al: ZINC ION (ZNal)
5am: ZINC ION (ZNam)
5an: ZINC ION (ZNan)
5ao: ZINC ION (ZNao)
5ap: ZINC ION (ZNap)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
5s: ZINC ION (ZNs)
5t: ZINC ION (ZNt)
5u: ZINC ION (ZNu)
5v: ZINC ION (ZNv)
5w: ZINC ION (ZNw)
5x: ZINC ION (ZNx)
5y: ZINC ION (ZNy)
5z: ZINC ION (ZNz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CAC
13
Ligand/Ion
CACODYLATE ION
3
GVT
1
Ligand/Ion
3,6,9,12,15,18,21,24,27-NONAOXAHEPTATRIACONTAN-1-OL
4
MRD
3
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
5
ZN
42
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(61, 61)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:26 , CAC A:1092 , CAC A:1093 , GLU F:26
BINDING SITE FOR RESIDUE ZN A1089
02
AC2
SOFTWARE
GLU A:37 , CAC A:1092 , CAC A:1093 , GLU F:37
BINDING SITE FOR RESIDUE ZN A1090
03
AC3
SOFTWARE
GLU B:26 , LYS B:30 , CAC B:1092 , CAC B:1093 , GLU E:26 , LYS E:30
BINDING SITE FOR RESIDUE ZN B1088
04
AC4
SOFTWARE
GLU B:37 , CAC B:1092 , CAC B:1093 , GLU E:37
BINDING SITE FOR RESIDUE ZN B1089
05
AC5
SOFTWARE
GLU C:26 , LYS C:30 , CAC C:1095 , CAC C:1101 , GLU H:26 , LYS H:30
BINDING SITE FOR RESIDUE ZN C1091
06
AC6
SOFTWARE
GLU C:37 , CAC C:1095 , CAC C:1101 , GLU H:37
BINDING SITE FOR RESIDUE ZN C1092
07
AC7
SOFTWARE
GLU D:26 , LYS D:30 , GLU I:26 , CAC I:1090 , CAC I:1091
BINDING SITE FOR RESIDUE ZN D1088
08
AC8
SOFTWARE
GLU D:37 , GLU I:37 , CAC I:1090 , CAC I:1091
BINDING SITE FOR RESIDUE ZN D1089
09
AC9
SOFTWARE
GLU G:26 , LYS G:30 , CAC G:1093
BINDING SITE FOR RESIDUE ZN G1090
10
BC1
SOFTWARE
GLU G:37 , CAC G:1093
BINDING SITE FOR RESIDUE ZN G1091
11
BC2
SOFTWARE
ASP A:65 , ASP A:69 , ZN A:1095
BINDING SITE FOR RESIDUE ZN A1091
12
BC3
SOFTWARE
ASP B:65 , ASP B:69 , ZN B:1095 , HOH B:2050
BINDING SITE FOR RESIDUE ZN B1090
13
BC4
SOFTWARE
ASP C:65 , ASP C:69 , ZN C:1097 , HOH C:2054
BINDING SITE FOR RESIDUE ZN C1093
14
BC5
SOFTWARE
ASP E:65 , ASP E:69 , ZN E:1092
BINDING SITE FOR RESIDUE ZN E1090
15
BC6
SOFTWARE
ASP F:65 , ASP F:69 , ZN F:1091 , HOH F:2030
BINDING SITE FOR RESIDUE ZN F1088
16
BC7
SOFTWARE
ASP G:65 , ASP G:69 , ZN G:1094 , HOH G:2038
BINDING SITE FOR RESIDUE ZN G1092
17
BC8
SOFTWARE
ASP I:65 , ASP I:69 , ZN I:1092 , HOH I:2035
BINDING SITE FOR RESIDUE ZN I1089
18
BC9
SOFTWARE
ASP H:65 , ASP H:69 , ZN H:1091 , HOH H:2058
BINDING SITE FOR RESIDUE ZN H1090
19
CC1
SOFTWARE
ASP D:65 , ASP D:69 , ZN D:1092 , HOH D:2036
BINDING SITE FOR RESIDUE ZN D1090
20
CC2
SOFTWARE
GLU A:36 , ZN A:1094 , CAC A:1096 , CAC A:1097 , ZN A:1099 , HOH A:2047 , GLU H:53
BINDING SITE FOR RESIDUE ZN A1098
21
CC3
SOFTWARE
ZN C:1096 , CAC C:1098 , CAC C:1099 , HOH C:2055 , GLU E:36
BINDING SITE FOR RESIDUE ZN C1100
22
CC4
SOFTWARE
GLU F:36 , ZN F:1090 , HOH F:2042
BINDING SITE FOR RESIDUE ZN F1089
23
CC5
SOFTWARE
ZN D:1091 , HOH D:2039
BINDING SITE FOR RESIDUE ZN D1093
24
CC6
SOFTWARE
ZN B:1094 , GLU I:53 , HOH I:2030 , HOH I:2036 , HOH I:2037
BINDING SITE FOR RESIDUE ZN I1093
25
CC7
SOFTWARE
GLU B:36 , ZN B:1094 , HOH B:2013
BINDING SITE FOR RESIDUE ZN B1091
26
CC8
SOFTWARE
GLU C:53 , ZN C:1096 , CAC C:1098 , CAC C:1099
BINDING SITE FOR RESIDUE ZN C1094
27
CC9
SOFTWARE
ZN A:1094 , CAC A:1096 , CAC A:1097 , ZN A:1098 , GLU H:53
BINDING SITE FOR RESIDUE ZN A1099
28
DC1
SOFTWARE
GLU B:26 , GLU B:37 , GLY B:82 , LEU B:83 , ZN B:1088 , ZN B:1089 , CAC B:1093 , GLU E:26 , LYS E:30 , GLU E:37
BINDING SITE FOR RESIDUE CAC B1092
29
DC2
SOFTWARE
GLU B:26 , LYS B:30 , GLU B:37 , ZN B:1088 , ZN B:1089 , CAC B:1092 , GLU E:26 , GLU E:37 , GLY E:82 , LEU E:83 , HOH E:2019
BINDING SITE FOR RESIDUE CAC B1093
30
DC3
SOFTWARE
ASP H:65 , ASP H:69 , ZN H:1090 , HOH H:2058
BINDING SITE FOR RESIDUE ZN H1091
31
DC4
SOFTWARE
GLU C:26 , GLU C:37 , GLY C:82 , LEU C:83 , ZN C:1091 , ZN C:1092 , CAC C:1101 , HOH C:2014 , GLU H:26 , LYS H:30 , GLU H:37 , HOH H:2017
BINDING SITE FOR RESIDUE CAC C1095
32
DC5
SOFTWARE
GLU G:26 , LYS G:30 , GLU G:37 , LEU G:83 , ZN G:1090 , ZN G:1091
BINDING SITE FOR RESIDUE CAC G1093
33
DC6
SOFTWARE
GLU D:26 , GLU D:37 , GLY D:82 , LEU D:83 , ZN D:1088 , ZN D:1089 , GLU I:26 , LYS I:30 , GLU I:37 , CAC I:1091
BINDING SITE FOR RESIDUE CAC I1090
34
DC7
SOFTWARE
GLU D:26 , LYS D:30 , GLU D:37 , ZN D:1088 , ZN D:1089 , GLU I:26 , GLU I:37 , GLY I:82 , LEU I:83 , CAC I:1090
BINDING SITE FOR RESIDUE CAC I1091
35
DC8
SOFTWARE
GLU A:26 , LYS A:30 , GLU A:37 , ZN A:1089 , ZN A:1090 , CAC A:1093 , GLU F:26 , GLY F:82 , LEU F:83
BINDING SITE FOR RESIDUE CAC A1092
36
DC9
SOFTWARE
GLU A:26 , GLY A:82 , ZN A:1089 , ZN A:1090 , CAC A:1092 , GLU F:26 , LYS F:30 , GLU F:37
BINDING SITE FOR RESIDUE CAC A1093
37
EC1
SOFTWARE
TRP A:19 , GLY A:23 , TRP B:19 , GLY B:23 , ILE B:24 , TRP C:19 , VAL C:20 , GLY C:23 , ILE C:24 , TRP E:19 , VAL E:20 , GLY E:23 , ILE E:24 , GLY F:23 , ILE F:24 , TRP H:19 , VAL H:20 , GLY H:23 , ILE H:24
BINDING SITE FOR RESIDUE GVT E1091
38
EC2
SOFTWARE
GLU A:36 , CAC A:1096 , CAC A:1097 , ZN A:1098 , ZN A:1099 , HOH A:2044
BINDING SITE FOR RESIDUE ZN A1094
39
EC3
SOFTWARE
GLU C:53 , ZN C:1094 , CAC C:1098 , CAC C:1099 , ZN C:1100
BINDING SITE FOR RESIDUE ZN C1096
40
EC4
SOFTWARE
GLU B:53 , GLU F:36 , ZN F:1089 , ZN F:1092 , HOH F:2042
BINDING SITE FOR RESIDUE ZN F1090
41
EC5
SOFTWARE
GLU B:46 , GLU B:53 , ZN F:1090 , HOH F:2044
BINDING SITE FOR RESIDUE ZN F1092
42
EC6
SOFTWARE
GLU C:36 , GLU D:53 , ZN D:1093 , HOH D:2037
BINDING SITE FOR RESIDUE ZN D1091
43
EC7
SOFTWARE
GLU B:36 , ZN B:1091 , HOH B:2013 , GLU I:53 , ZN I:1093
BINDING SITE FOR RESIDUE ZN B1094
44
EC8
SOFTWARE
ASP A:65 , ASP A:69 , ZN A:1091
BINDING SITE FOR RESIDUE ZN A1095
45
EC9
SOFTWARE
ASP B:65 , ASP B:69 , ZN B:1090
BINDING SITE FOR RESIDUE ZN B1095
46
FC1
SOFTWARE
ASP C:65 , ASP C:69 , ZN C:1093
BINDING SITE FOR RESIDUE ZN C1097
47
FC2
SOFTWARE
ASP E:65 , ASP E:69 , ZN E:1090
BINDING SITE FOR RESIDUE ZN E1092
48
FC3
SOFTWARE
ASP F:65 , ASP F:69 , ZN F:1088 , HOH F:2043
BINDING SITE FOR RESIDUE ZN F1091
49
FC4
SOFTWARE
ASP G:65 , ASP G:69 , ZN G:1092
BINDING SITE FOR RESIDUE ZN G1094
50
FC5
SOFTWARE
ASP I:65 , ASP I:69 , ZN I:1089
BINDING SITE FOR RESIDUE ZN I1092
51
FC6
SOFTWARE
LEU B:25 , LEU B:74 , ASN F:18 , GLN H:59 , PHE H:60
BINDING SITE FOR RESIDUE MRD H1092
52
FC7
SOFTWARE
ASP D:65 , ASP D:69 , ZN D:1090
BINDING SITE FOR RESIDUE ZN D1092
53
FC8
SOFTWARE
GLY A:33 , VAL A:34 , GLU A:36 , GLN A:39 , ALA A:47 , ZN A:1094 , CAC A:1097 , ZN A:1098 , ZN A:1099 , HOH A:2047
BINDING SITE FOR RESIDUE CAC A1096
54
FC9
SOFTWARE
GLU A:36 , ZN A:1094 , CAC A:1096 , ZN A:1098 , ZN A:1099 , HOH A:2046 , GLU H:46 , GLU H:53 , GLU H:68
BINDING SITE FOR RESIDUE CAC A1097
55
GC1
SOFTWARE
ALA C:49 , GLU C:53 , GLU C:68 , ZN C:1094 , ZN C:1096 , CAC C:1099 , ZN C:1100
BINDING SITE FOR RESIDUE CAC C1098
56
GC2
SOFTWARE
GLU C:53 , ZN C:1094 , ZN C:1096 , CAC C:1098 , ZN C:1100 , GLY E:33 , VAL E:34 , GLU E:36 , HOH E:2027
BINDING SITE FOR RESIDUE CAC C1099
57
GC3
SOFTWARE
GLU C:26 , LYS C:30 , GLU C:37 , ZN C:1091 , ZN C:1092 , CAC C:1095 , GLU H:26 , GLU H:37 , GLY H:82 , LEU H:83 , HOH H:2016
BINDING SITE FOR RESIDUE CAC C1101
58
GC4
SOFTWARE
GLN B:59 , LEU H:29 , HOH H:2046
BINDING SITE FOR RESIDUE ACT B1096
59
GC5
SOFTWARE
GLN D:59
BINDING SITE FOR RESIDUE ACT E1093
60
GC6
SOFTWARE
ASN B:18 , TRP B:19 , LEU C:25 , GLN C:59 , PHE C:60 , LEU C:74 , ARG C:77
BINDING SITE FOR RESIDUE MRD B1097
61
GC7
SOFTWARE
ASN C:18 , TRP C:19 , LEU F:25 , LEU F:74 , GLN G:59 , PHE G:60
BINDING SITE FOR RESIDUE MRD G1095
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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[
close CATH info
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Pfam Domains
(1, 9)
Info
all PFAM domains
1a: PFAM_PorB_2vqgI01 (I:12-88)
1b: PFAM_PorB_2vqgI02 (I:12-88)
1c: PFAM_PorB_2vqgI03 (I:12-88)
1d: PFAM_PorB_2vqgI04 (I:12-88)
1e: PFAM_PorB_2vqgI05 (I:12-88)
1f: PFAM_PorB_2vqgI06 (I:12-88)
1g: PFAM_PorB_2vqgI07 (I:12-88)
1h: PFAM_PorB_2vqgI08 (I:12-88)
1i: PFAM_PorB_2vqgI09 (I:12-88)
View:
Select:
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: PorB]
(4)
Family
:
PorB
(4)
Corynebacterium glutamicum (Brevibacterium flavum)
(4)
1a
PorB-2vqgI01
I:12-88
1b
PorB-2vqgI02
I:12-88
1c
PorB-2vqgI03
I:12-88
1d
PorB-2vqgI04
I:12-88
1e
PorB-2vqgI05
I:12-88
1f
PorB-2vqgI06
I:12-88
1g
PorB-2vqgI07
I:12-88
1h
PorB-2vqgI08
I:12-88
1i
PorB-2vqgI09
I:12-88
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close Pfam info
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Asym.Unit (135 KB)
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