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2VHF
Biol. Unit 2
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Asym.Unit (228 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (111 KB)
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(1)
Title
:
STRUCTURE OF THE CYLD USP DOMAIN
Authors
:
D. Komander, C. J. Lord, H. Scheel, S. Swift, K. Hofmann, A. Ashworth, D. Barford
Date
:
21 Nov 07 (Deposition) - 11 Mar 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cytokine Signalling, Linkage Specificity, Deubiquitinating Enzyme, Lys63- Linked, Anti-Oncogene, Thiol Protease, Cell Signalling, Phosphorylation, Zn-Binding Domain, Ubiquitin, Cell Cycle, Usp Domain, Cross-Brace, Nf-Kb, B-Box, Protease, Hydrolase, Cytoplasm, Alternative Splicing, Ubl Conjugation Pathway
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. Komander, C. J. Lord, H. Scheel, S. Swift, K. Hofmann, A. Ashworth, D. Barford
The Structure Of The Cyld Usp Domain Explains Its Specificity For Lys63-Linked Polyubiquitin And Reveals A B-Box Module
Mol. Cell. Biol. V. 29 451 2008
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
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Sites
(2, 2)
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1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
CYS B:788 , CYS B:791 , CYS B:817 , CYS B:820
BINDING SITE FOR RESIDUE ZN B1956
2
AC4
SOFTWARE
CYS B:799 , CYS B:802 , HIS B:825 , HIS B:833
BINDING SITE FOR RESIDUE ZN B1957
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_045967 (E747G, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_045967
E
747
G
CYLD_HUMAN
Disease (MFT1)
---
B
E
747
G
SNP/SAP Summary Statistics
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: USP_3 (B:592-950)
2: USP_1 (B:593-608)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
USP_3
PS50235
Ubiquitin specific protease (USP) domain profile.
CYLD_HUMAN
592-950
1
-
B:592-950
2
USP_1
PS00972
Ubiquitin specific protease (USP) domain signature 1.
CYLD_HUMAN
593-608
1
-
B:593-608
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Exons
(0, 0)
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SCOP Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_UCH_2vhfB01 (B:590-893)
1b: PFAM_UCH_2vhfB02 (B:590-893)
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Clan
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Peptidase_CA
(169)
Family
:
UCH
(11)
Homo sapiens (Human)
(6)
1a
UCH-2vhfB01
B:590-893
1b
UCH-2vhfB02
B:590-893
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Chain B
Asymmetric Unit 1
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Asym.Unit (228 KB)
Header - Asym.Unit
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