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2VHF
Asym. Unit
Info
Asym.Unit (228 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (111 KB)
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(1)
Title
:
STRUCTURE OF THE CYLD USP DOMAIN
Authors
:
D. Komander, C. J. Lord, H. Scheel, S. Swift, K. Hofmann, A. Ashworth, D. Barford
Date
:
21 Nov 07 (Deposition) - 11 Mar 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cytokine Signalling, Linkage Specificity, Deubiquitinating Enzyme, Lys63- Linked, Anti-Oncogene, Thiol Protease, Cell Signalling, Phosphorylation, Zn-Binding Domain, Ubiquitin, Cell Cycle, Usp Domain, Cross-Brace, Nf-Kb, B-Box, Protease, Hydrolase, Cytoplasm, Alternative Splicing, Ubl Conjugation Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Komander, C. J. Lord, H. Scheel, S. Swift, K. Hofmann, A. Ashworth, D. Barford
The Structure Of The Cyld Usp Domain Explains Its Specificity For Lys63-Linked Polyubiquitin And Reveals A B-Box Module
Mol. Cell. Biol. V. 29 451 2008
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:788 , CYS A:791 , CYS A:817 , CYS A:820
BINDING SITE FOR RESIDUE ZN A1957
2
AC2
SOFTWARE
CYS A:799 , CYS A:802 , HIS A:825 , HIS A:833
BINDING SITE FOR RESIDUE ZN A1958
3
AC3
SOFTWARE
CYS B:788 , CYS B:791 , CYS B:817 , CYS B:820
BINDING SITE FOR RESIDUE ZN B1956
4
AC4
SOFTWARE
CYS B:799 , CYS B:802 , HIS B:825 , HIS B:833
BINDING SITE FOR RESIDUE ZN B1957
[
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_045967 (E747G, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_045967
E
747
G
CYLD_HUMAN
Disease (MFT1)
---
A/B
E
747
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: USP_3 (A:592-950,B:592-950)
2: USP_1 (A:593-608,B:593-608)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
USP_3
PS50235
Ubiquitin specific protease (USP) domain profile.
CYLD_HUMAN
592-950
2
A:592-950
B:592-950
2
USP_1
PS00972
Ubiquitin specific protease (USP) domain signature 1.
CYLD_HUMAN
593-608
2
A:593-608
B:593-608
[
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Exons
(9, 18)
Info
All Exons
Exon 1.12 (A:583-609 | B:583-609)
Exon 1.13 (A:609-650 | B:609-650)
Exon 1.14 (A:650-681 (gaps) | B:650-681 (gaps...)
Exon 1.15 (A:681-703 | B:681-703)
Exon 1.16 (A:703-747 (gaps) | B:703-747 (gaps...)
Exon 1.17 (A:748-784 | B:748-784 (gaps))
Exon 1.18 (A:784-823 | B:784-823)
Exon 1.19 (A:824-892 (gaps) | B:824-893)
Exon 1.20 (A:900-956 | B:902-955 (gaps))
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.11/1.12
02: Boundary 1.12/1.13
03: Boundary 1.13/1.14
04: Boundary 1.14/1.15
05: Boundary 1.15/1.16
06: Boundary 1.16/1.17
07: Boundary 1.17/1.18
08: Boundary 1.18/1.19
09: Boundary 1.19/1.20
10: Boundary 1.20/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000311559
1a
ENSE00001349581
chr16:
50775961-50776035
75
CYLD_HUMAN
-
0
0
-
-
1.2
ENST00000311559
2
ENSE00001206771
chr16:
50776673-50776752
80
CYLD_HUMAN
-
0
0
-
-
1.3
ENST00000311559
3
ENSE00001349254
chr16:
50778641-50778777
137
CYLD_HUMAN
-
0
0
-
-
1.4
ENST00000311559
4
ENSE00001411088
chr16:
50783487-50784113
627
CYLD_HUMAN
1-168
168
0
-
-
1.5
ENST00000311559
5
ENSE00001206765
chr16:
50785515-50785817
303
CYLD_HUMAN
169-269
101
0
-
-
1.6
ENST00000311559
6
ENSE00001428729
chr16:
50788230-50788335
106
CYLD_HUMAN
270-305
36
0
-
-
1.7
ENST00000311559
7
ENSE00001660649
chr16:
50809077-50809085
9
CYLD_HUMAN
305-308
4
0
-
-
1.8
ENST00000311559
8
ENSE00001411085
chr16:
50810090-50810188
99
CYLD_HUMAN
308-341
34
0
-
-
1.9
ENST00000311559
9
ENSE00001206752
chr16:
50811736-50811852
117
CYLD_HUMAN
341-380
40
0
-
-
1.10
ENST00000311559
10
ENSE00000446013
chr16:
50813576-50813955
380
CYLD_HUMAN
380-506
127
0
-
-
1.11
ENST00000311559
11
ENSE00000446014
chr16:
50815157-50815322
166
CYLD_HUMAN
507-562
56
0
-
-
1.12
ENST00000311559
12
ENSE00000446015
chr16:
50816236-50816377
142
CYLD_HUMAN
562-609
48
2
A:583-609
B:583-609
27
27
1.13
ENST00000311559
13
ENSE00000683749
chr16:
50818240-50818362
123
CYLD_HUMAN
609-650
42
2
A:609-650
B:609-650
42
42
1.14
ENST00000311559
14
ENSE00000446017
chr16:
50820766-50820857
92
CYLD_HUMAN
650-681
32
2
A:650-681 (gaps)
B:650-681 (gaps)
32
32
1.15
ENST00000311559
15
ENSE00000683753
chr16:
50821697-50821763
67
CYLD_HUMAN
681-703
23
2
A:681-703
B:681-703
23
23
1.16
ENST00000311559
16
ENSE00000446019
chr16:
50825469-50825601
133
CYLD_HUMAN
703-747
45
2
A:703-747 (gaps)
B:703-747 (gaps)
45
45
1.17
ENST00000311559
17
ENSE00001206713
chr16:
50826508-50826616
109
CYLD_HUMAN
748-784
37
2
A:748-784
B:748-784 (gaps)
37
37
1.18
ENST00000311559
18
ENSE00001206701
chr16:
50827457-50827575
119
CYLD_HUMAN
784-823
40
2
A:784-823
B:784-823
40
40
1.19
ENST00000311559
19
ENSE00000446022
chr16:
50828123-50828339
217
CYLD_HUMAN
824-896
73
2
A:824-892 (gaps)
B:824-893
69
70
1.20
ENST00000311559
20
ENSE00001373532
chr16:
50830235-50835846
5612
CYLD_HUMAN
896-956
61
2
A:900-956
B:902-955 (gaps)
57
54
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_UCH_2vhfB01 (B:590-893)
1b: PFAM_UCH_2vhfB02 (B:590-893)
View:
Select:
Label:
Clans
(
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(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_CA
(169)
Family
:
UCH
(11)
Homo sapiens (Human)
(6)
1a
UCH-2vhfB01
B:590-893
1b
UCH-2vhfB02
B:590-893
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Asym.Unit (228 KB)
Header - Asym.Unit
Biol.Unit 1 (113 KB)
Header - Biol.Unit 1
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