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2V63
Asym. Unit
Info
Asym.Unit (841 KB)
Biol.Unit 1 (826 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RUBISCO FROM CHLAMYDOMONAS REINHARDTII WITH A LARGE-SUBUNIT V331A MUTATION
Authors
:
S. Karkehabadi, S. Satagopan, T. C. Taylor, R. J. Spreitzer, I. Anderss
Date
:
13 Jul 07 (Deposition) - 31 Jul 07 (Release) - 04 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (1x)
Keywords
:
Large Subunit Loop 6 Mutation, Co2/O2 Specificity, Carbon Dioxide Fixation, Photosynthesis, Transit Peptide, Photorespiration, Metal-Binding, Hydroxylation, Oxidoreductase, Methylation, Chloroplast, Calvin Cycle, Monooxygenase, Lyase, Rubisco, Magnesium
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Karkehabadi, S. Satagopan, T. C. Taylor, R. J. Spreitzer, I. Andersson
Structural Analysis Of Altered Large-Subunit Loop- 6-Carboxy-Terminus Interactions That Influence Catalytic Efficiency And Co2 O2 Specificity Of Ribulose-1, 5-Bisphosphate Carboxylase Oxygenase
Biochemistry V. 46 11080 2007
[
close entry info
]
Hetero Components
(7, 110)
Info
All Hetero Components
1a: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPa)
1b: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPb)
1c: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPc)
1d: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPd)
1e: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPe)
1f: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPf)
1g: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPg)
1h: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPh)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2ar: 1,2-ETHANEDIOL (EDOar)
2as: 1,2-ETHANEDIOL (EDOas)
2at: 1,2-ETHANEDIOL (EDOat)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: 4-HYDROXYPROLINE (HYPa)
3b: 4-HYDROXYPROLINE (HYPb)
3c: 4-HYDROXYPROLINE (HYPc)
3d: 4-HYDROXYPROLINE (HYPd)
3e: 4-HYDROXYPROLINE (HYPe)
3f: 4-HYDROXYPROLINE (HYPf)
3g: 4-HYDROXYPROLINE (HYPg)
3h: 4-HYDROXYPROLINE (HYPh)
3i: 4-HYDROXYPROLINE (HYPi)
3j: 4-HYDROXYPROLINE (HYPj)
3k: 4-HYDROXYPROLINE (HYPk)
3l: 4-HYDROXYPROLINE (HYPl)
3m: 4-HYDROXYPROLINE (HYPm)
3n: 4-HYDROXYPROLINE (HYPn)
3o: 4-HYDROXYPROLINE (HYPo)
3p: 4-HYDROXYPROLINE (HYPp)
4a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
4b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
4c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
4d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
4e: LYSINE NZ-CARBOXYLIC ACID (KCXe)
4f: LYSINE NZ-CARBOXYLIC ACID (KCXf)
4g: LYSINE NZ-CARBOXYLIC ACID (KCXg)
4h: LYSINE NZ-CARBOXYLIC ACID (KCXh)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
5f: MAGNESIUM ION (MGf)
5g: MAGNESIUM ION (MGg)
5h: MAGNESIUM ION (MGh)
6a: N-METHYL METHIONINE (MMEa)
6b: N-METHYL METHIONINE (MMEb)
6c: N-METHYL METHIONINE (MMEc)
6d: N-METHYL METHIONINE (MMEd)
6e: N-METHYL METHIONINE (MMEe)
6f: N-METHYL METHIONINE (MMEf)
6g: N-METHYL METHIONINE (MMEg)
6h: N-METHYL METHIONINE (MMEh)
7a: S-METHYLCYSTEINE (SMCa)
7b: S-METHYLCYSTEINE (SMCb)
7c: S-METHYLCYSTEINE (SMCc)
7d: S-METHYLCYSTEINE (SMCd)
7e: S-METHYLCYSTEINE (SMCe)
7f: S-METHYLCYSTEINE (SMCf)
7g: S-METHYLCYSTEINE (SMCg)
7h: S-METHYLCYSTEINE (SMCh)
7i: S-METHYLCYSTEINE (SMCi)
7j: S-METHYLCYSTEINE (SMCj)
7k: S-METHYLCYSTEINE (SMCk)
7l: S-METHYLCYSTEINE (SMCl)
7m: S-METHYLCYSTEINE (SMCm)
7n: S-METHYLCYSTEINE (SMCn)
7o: S-METHYLCYSTEINE (SMCo)
7p: S-METHYLCYSTEINE (SMCp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAP
8
Ligand/Ion
2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2
EDO
46
Ligand/Ion
1,2-ETHANEDIOL
3
HYP
16
Mod. Amino Acid
4-HYDROXYPROLINE
4
KCX
8
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
5
MG
8
Ligand/Ion
MAGNESIUM ION
6
MME
8
Mod. Amino Acid
N-METHYL METHIONINE
7
SMC
16
Mod. Amino Acid
S-METHYLCYSTEINE
[
close Hetero Component info
]
Sites
(62, 62)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:477 , HOH A:2125 , HOH A:2244 , HOH A:2289 , HOH A:2290 , HOH A:2291 , HOH A:2292 , GLU B:60 , THR B:65 , TRP B:66 , ASN B:123 , HOH B:2034
BINDING SITE FOR RESIDUE CAP A 476
02
AC2
SOFTWARE
LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , CAP A:476
BINDING SITE FOR RESIDUE MG A 477
03
AC3
SOFTWARE
KCX B:201 , ASP B:203 , GLU B:204 , CAP B:477
BINDING SITE FOR RESIDUE MG B 476
04
AC4
SOFTWARE
GLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , HOH A:2091 , HOH A:2092 , THR B:173 , LYS B:175 , LYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , HIS B:294 , ARG B:295 , HIS B:327 , LYS B:334 , LEU B:335 , SER B:379 , GLY B:380 , GLY B:381 , GLY B:403 , GLY B:404 , MG B:476 , HOH B:2115 , HOH B:2116 , HOH B:2233 , HOH B:2279 , HOH B:2280 , HOH B:2281 , HOH B:2282
BINDING SITE FOR RESIDUE CAP B 477
05
AC5
SOFTWARE
KCX C:201 , ASP C:203 , GLU C:204 , CAP C:477
BINDING SITE FOR RESIDUE MG C 476
06
AC6
SOFTWARE
THR C:173 , LYS C:175 , LYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , HIS C:294 , ARG C:295 , HIS C:327 , LYS C:334 , LEU C:335 , SER C:379 , GLY C:380 , GLY C:381 , GLY C:403 , GLY C:404 , MG C:476 , HOH C:2120 , HOH C:2121 , HOH C:2226 , HOH C:2239 , HOH C:2273 , HOH C:2274 , HOH C:2275 , GLU D:60 , THR D:65 , TRP D:66 , ASN D:123 , HOH D:2034 , HOH D:2085
BINDING SITE FOR RESIDUE CAP C 477
07
AC7
SOFTWARE
LYS D:177 , KCX D:201 , ASP D:203 , GLU D:204 , CAP D:477
BINDING SITE FOR RESIDUE MG D 476
08
AC8
SOFTWARE
GLU C:60 , THR C:65 , TRP C:66 , ASN C:123 , HOH C:2038 , HOH C:2088 , THR D:173 , LYS D:175 , LYS D:177 , KCX D:201 , ASP D:203 , GLU D:204 , HIS D:294 , ARG D:295 , HIS D:327 , LYS D:334 , LEU D:335 , SER D:379 , GLY D:380 , GLY D:381 , GLY D:403 , GLY D:404 , MG D:476 , HOH D:2119 , HOH D:2120 , HOH D:2256 , HOH D:2257 , HOH D:2258 , HOH D:2259 , HOH D:2260
BINDING SITE FOR RESIDUE CAP D 477
09
AC9
SOFTWARE
LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , CAP E:477
BINDING SITE FOR RESIDUE MG E 476
10
BC1
SOFTWARE
THR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , MG E:476 , HOH E:2096 , HOH E:2205 , HOH E:2220 , HOH E:2259 , HOH E:2260 , HOH E:2261 , GLU F:60 , THR F:65 , TRP F:66 , ASN F:123 , HOH F:2078
BINDING SITE FOR RESIDUE CAP E 477
11
BC2
SOFTWARE
LYS F:177 , KCX F:201 , ASP F:203 , GLU F:204 , CAP F:477
BINDING SITE FOR RESIDUE MG F 476
12
BC3
SOFTWARE
GLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , HOH E:2023 , HOH E:2061 , THR F:173 , LYS F:175 , LYS F:177 , KCX F:201 , ASP F:203 , GLU F:204 , HIS F:294 , ARG F:295 , HIS F:327 , LYS F:334 , LEU F:335 , SER F:379 , GLY F:380 , GLY F:381 , GLY F:403 , GLY F:404 , MG F:476 , HOH F:2245 , HOH F:2246 , HOH F:2247 , HOH F:2248 , HOH F:2249 , HOH F:2250
BINDING SITE FOR RESIDUE CAP F 477
13
BC4
SOFTWARE
LYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , CAP G:477
BINDING SITE FOR RESIDUE MG G 476
14
BC5
SOFTWARE
THR G:173 , LYS G:175 , LYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , HIS G:294 , ARG G:295 , HIS G:327 , LYS G:334 , LEU G:335 , SER G:379 , GLY G:380 , GLY G:381 , GLY G:403 , GLY G:404 , MG G:476 , HOH G:2121 , HOH G:2227 , HOH G:2279 , HOH G:2280 , HOH G:2281 , HOH G:2282 , GLU H:60 , THR H:65 , TRP H:66 , ASN H:123 , HOH H:2038 , HOH H:2088
BINDING SITE FOR RESIDUE CAP G 477
15
BC6
SOFTWARE
LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , CAP H:477
BINDING SITE FOR RESIDUE MG H 476
16
BC7
SOFTWARE
GLU G:60 , THR G:65 , TRP G:66 , ASN G:123 , HOH G:2038 , HOH G:2082 , THR H:173 , LYS H:175 , LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , HIS H:294 , ARG H:295 , HIS H:327 , LYS H:334 , LEU H:335 , SER H:379 , GLY H:380 , GLY H:381 , GLY H:403 , GLY H:404 , MG H:476 , HOH H:2119 , HOH H:2120 , HOH H:2234 , HOH H:2245 , HOH H:2277 , HOH H:2278 , HOH H:2279
BINDING SITE FOR RESIDUE CAP H 477
17
BC8
SOFTWARE
VAL A:17 , LYS A:18 , THR A:65 , TRP A:66 , THR A:67 , THR A:68 , HOH A:2014 , HOH A:2293
BINDING SITE FOR RESIDUE EDO A1477
18
BC9
SOFTWARE
GLU A:52 , HOH A:2294
BINDING SITE FOR RESIDUE EDO A1478
19
CC1
SOFTWARE
ARG A:295 , SER A:328 , GLY A:329 , GLU A:336 , PHE A:345 , HOH A:2193 , HOH A:2295
BINDING SITE FOR RESIDUE EDO A1479
20
CC2
SOFTWARE
LYS H:466 , GLU H:468 , PHE H:469 , HOH H:2281
BINDING SITE FOR RESIDUE EDO H1477
21
CC3
SOFTWARE
ARG H:295 , HIS H:298 , ASP H:302 , PHE H:311 , SER H:328 , GLU H:336 , PHE H:345 , HOH H:2199
BINDING SITE FOR RESIDUE EDO H1478
22
CC4
SOFTWARE
TYR A:226 , LYS O:49 , GLU O:55 , HOH O:2079
BINDING SITE FOR RESIDUE EDO O1141
23
CC5
SOFTWARE
GLY O:37 , TRP O:38 , PHE O:81 , GLY O:82 , CYS O:83 , HOH O:2081
BINDING SITE FOR RESIDUE EDO O1142
24
CC6
SOFTWARE
VAL C:17 , LYS C:18 , THR C:65 , TRP C:66 , THR C:67 , THR C:68 , HOH C:2021 , HOH C:2040
BINDING SITE FOR RESIDUE EDO C1475
25
CC7
SOFTWARE
GLY K:37 , TRP K:38 , ILE K:39 , GLY K:82 , CYS K:83
BINDING SITE FOR RESIDUE EDO K1141
26
CC8
SOFTWARE
TYR B:24 , GLY B:64 , THR B:68 , VAL B:69 , ASP B:72 , EDO B:1476 , HOH B:2283 , HOH B:2284 , HOH B:2285
BINDING SITE FOR RESIDUE EDO B1475
27
CC9
SOFTWARE
VAL B:17 , LYS B:18 , THR B:65 , TRP B:66 , THR B:67 , THR B:68 , EDO B:1475 , HOH B:2283 , HOH B:2286
BINDING SITE FOR RESIDUE EDO B1476
28
DC1
SOFTWARE
PHE A:469 , HOH A:2296 , TYR B:20
BINDING SITE FOR RESIDUE EDO B1477
29
DC2
SOFTWARE
HOH A:2294 , LYS B:466 , PHE B:467 , GLU B:468 , PHE B:469
BINDING SITE FOR RESIDUE EDO B1478
30
DC3
SOFTWARE
TYR H:226 , ALA H:230 , LYS J:49 , GLU J:55 , ASP J:69 , HOH J:2083
BINDING SITE FOR RESIDUE EDO J1141
31
DC4
SOFTWARE
LEU G:270 , GLY G:273 , PHE G:274 , HOH G:2287 , LEU H:270 , THR H:271
BINDING SITE FOR RESIDUE EDO G1479
32
DC5
SOFTWARE
LYS D:18 , THR D:65 , TRP D:66 , THR D:67 , THR D:68 , EDO D:1477 , HOH D:2037 , HOH D:2261
BINDING SITE FOR RESIDUE EDO D1475
33
DC6
SOFTWARE
LYS D:466 , PHE D:467 , GLU D:468 , PHE D:469 , HOH D:2262
BINDING SITE FOR RESIDUE EDO D1476
34
DC7
SOFTWARE
TYR E:24 , THR E:68 , VAL E:69 , ASP E:72 , HOH E:2026 , HOH E:2262
BINDING SITE FOR RESIDUE EDO E1475
35
DC8
SOFTWARE
LYS E:466 , PHE E:467 , GLU E:468 , PHE E:469
BINDING SITE FOR RESIDUE EDO E1477
36
DC9
SOFTWARE
GLY J:37 , TRP J:38 , PHE J:81 , GLY J:82 , CYS J:83 , HOH J:2084
BINDING SITE FOR RESIDUE EDO J1142
37
EC1
SOFTWARE
TYR D:24 , THR D:68 , VAL D:69 , ASP D:72 , EDO D:1475 , HOH D:2036 , HOH D:2037 , HOH D:2045
BINDING SITE FOR RESIDUE EDO D1477
38
EC2
SOFTWARE
ARG D:295 , PHE D:311 , GLY D:329 , GLU D:336 , HOH D:2191
BINDING SITE FOR RESIDUE EDO D1478
39
EC3
SOFTWARE
TYR F:226 , LYS P:49 , GLU P:55 , HOH P:2045 , HOH P:2077
BINDING SITE FOR RESIDUE EDO P1141
40
EC4
SOFTWARE
TYR D:226 , HOH D:2146 , LYS N:49 , GLU N:55 , ASP N:69 , HOH N:2033
BINDING SITE FOR RESIDUE EDO N1141
41
EC5
SOFTWARE
GLY N:37 , ILE N:39 , PHE N:81 , GLY N:82 , CYS N:83 , HOH N:2072
BINDING SITE FOR RESIDUE EDO N1142
42
EC6
SOFTWARE
TYR B:226 , LYS B:227 , HOH B:2142 , LYS L:49 , GLU L:55 , SER L:56 , ASP L:69
BINDING SITE FOR RESIDUE EDO L1141
43
EC7
SOFTWARE
GLY A:10 , HOH A:2051 , GLY L:37 , ILE L:39 , GLY L:82
BINDING SITE FOR RESIDUE EDO L1142
44
EC8
SOFTWARE
LYS A:466 , GLU A:468 , PHE A:469 , HOH A:2296
BINDING SITE FOR RESIDUE EDO A1480
45
EC9
SOFTWARE
TYR C:20 , GLU C:52 , HOH C:2277 , HOH C:2278
BINDING SITE FOR RESIDUE EDO C1477
46
FC1
SOFTWARE
LYS C:466 , PHE C:467 , GLU C:468 , PHE C:469 , HOH C:2279 , HOH C:2280
BINDING SITE FOR RESIDUE EDO C1478
47
FC2
SOFTWARE
ARG C:295 , PHE C:345 , ASP C:473 , HOH C:2281 , HOH C:2282
BINDING SITE FOR RESIDUE EDO C1479
48
FC3
SOFTWARE
TYR G:20 , GLU G:52 , HOH H:2281
BINDING SITE FOR RESIDUE EDO G1480
49
FC4
SOFTWARE
TYR C:226 , LYS I:49 , GLU I:55 , HOH I:2039 , HOH I:2075
BINDING SITE FOR RESIDUE EDO I1141
50
FC5
SOFTWARE
TYR E:226 , HOH E:2126 , LYS K:49 , GLU K:55 , HOH K:2051
BINDING SITE FOR RESIDUE EDO K1142
51
FC6
SOFTWARE
TYR G:226 , LYS M:49 , GLU M:55 , HOH M:2056 , HOH M:2103
BINDING SITE FOR RESIDUE EDO M1141
52
FC7
SOFTWARE
GLY H:10 , GLY M:37 , ILE M:39 , PHE M:81 , GLY M:82 , HOH M:2104 , HOH M:2105 , HOH M:2106
BINDING SITE FOR RESIDUE EDO M1142
53
FC8
SOFTWARE
LEU C:270 , HOH C:2276 , LEU D:270 , HOH D:2167
BINDING SITE FOR RESIDUE EDO C1476
54
FC9
SOFTWARE
LYS H:18 , THR H:65 , TRP H:66 , THR H:67 , THR H:68 , HOH H:2019 , HOH H:2280
BINDING SITE FOR RESIDUE EDO H1475
55
GC1
SOFTWARE
GLU H:52
BINDING SITE FOR RESIDUE EDO H1476
56
GC2
SOFTWARE
TYR G:24 , GLY G:64 , THR G:68 , VAL G:69 , ASP G:72 , EDO G:1476 , HOH G:2283 , HOH G:2284 , HOH G:2285
BINDING SITE FOR RESIDUE EDO G1475
57
GC3
SOFTWARE
LYS G:18 , THR G:65 , TRP G:66 , THR G:67 , THR G:68 , EDO G:1475 , HOH G:2013 , HOH G:2284
BINDING SITE FOR RESIDUE EDO G1476
58
GC4
SOFTWARE
LYS G:466 , PHE G:467 , GLU G:468 , PHE G:469 , HOH G:2286
BINDING SITE FOR RESIDUE EDO G1477
59
GC5
SOFTWARE
ARG G:295 , PHE G:345 , ASP G:473
BINDING SITE FOR RESIDUE EDO G1478
60
GC6
SOFTWARE
LYS E:18 , THR E:65 , TRP E:66 , THR E:67 , THR E:68 , HOH E:2006 , HOH E:2026
BINDING SITE FOR RESIDUE EDO E1476
61
GC7
SOFTWARE
LYS F:18 , THR F:65 , TRP F:66 , THR F:67 , THR F:68 , HOH F:2251 , HOH F:2252
BINDING SITE FOR RESIDUE EDO F1475
62
GC8
SOFTWARE
GLU F:52 , HOH F:2253
BINDING SITE FOR RESIDUE EDO F1476
[
close Site info
]
SAPs(SNPs)/Variants
(1, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_RBL_CHLRE_001 (P46P, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_RBL_CHLRE_001
*
L
46
P
RBL_CHLRE
---
---
A/B/C/D/E/F/G/H
P
46
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: RUBISCO_LARGE (A:196-204,B:196-204,C:196-204,D:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RUBISCO_LARGE
PS00157
Ribulose bisphosphate carboxylase large chain active site.
RBL_CHLRE
196-204
8
A:196-204
B:196-204
C:196-204
D:196-204
E:196-204
F:196-204
G:196-204
H:196-204
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d2v63a2 (A:9-149)
1b: SCOP_d2v63c2 (C:9-149)
1c: SCOP_d2v63d2 (D:11-149)
1d: SCOP_d2v63e2 (E:11-149)
1e: SCOP_d2v63f2 (F:9-149)
1f: SCOP_d2v63g2 (G:9-149)
1g: SCOP_d2v63h2 (H:9-149)
1h: SCOP_d2v63b2 (B:9-149)
2a: SCOP_d2v63i_ (I:)
2b: SCOP_d2v63k_ (K:)
2c: SCOP_d2v63l_ (L:)
2d: SCOP_d2v63m_ (M:)
2e: SCOP_d2v63n_ (N:)
2f: SCOP_d2v63o_ (O:)
2g: SCOP_d2v63p_ (P:)
2h: SCOP_d2v63j_ (J:)
3a: SCOP_d2v63a1 (A:150-474)
3b: SCOP_d2v63c1 (C:150-474)
3c: SCOP_d2v63d1 (D:150-474)
3d: SCOP_d2v63e1 (E:150-474)
3e: SCOP_d2v63f1 (F:150-474)
3f: SCOP_d2v63g1 (G:150-474)
3g: SCOP_d2v63h1 (H:150-474)
3h: SCOP_d2v63b1 (B:150-474)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RuBisCO, large subunit, small (N-terminal) domain
(66)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(9)
1a
d2v63a2
A:9-149
1b
d2v63c2
C:9-149
1c
d2v63d2
D:11-149
1d
d2v63e2
E:11-149
1e
d2v63f2
F:9-149
1f
d2v63g2
G:9-149
1g
d2v63h2
H:9-149
1h
d2v63b2
B:9-149
Fold
:
RuBisCO, small subunit
(44)
Superfamily
:
RuBisCO, small subunit
(44)
Family
:
RuBisCO, small subunit
(44)
Protein domain
:
automated matches
(16)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(7)
2a
d2v63i_
I:
2b
d2v63k_
K:
2c
d2v63l_
L:
2d
d2v63m_
M:
2e
d2v63n_
N:
2f
d2v63o_
O:
2g
d2v63p_
P:
2h
d2v63j_
J:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
RuBisCo, C-terminal domain
(66)
Family
:
RuBisCo, large subunit, C-terminal domain
(56)
Protein domain
:
automated matches
(16)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(9)
3a
d2v63a1
A:150-474
3b
d2v63c1
C:150-474
3c
d2v63d1
D:150-474
3d
d2v63e1
E:150-474
3e
d2v63f1
F:150-474
3f
d2v63g1
G:150-474
3g
d2v63h1
H:150-474
3h
d2v63b1
B:150-474
[
close SCOP info
]
CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_2v63A01 (A:22-148)
1b: CATH_2v63C01 (C:22-148)
1c: CATH_2v63D01 (D:22-148)
1d: CATH_2v63E01 (E:22-148)
1e: CATH_2v63F01 (F:22-148)
1f: CATH_2v63G01 (G:22-148)
1g: CATH_2v63H01 (H:22-148)
1h: CATH_2v63B01 (B:22-148)
2a: CATH_2v63I00 (I:2-140)
2b: CATH_2v63K00 (K:2-140)
2c: CATH_2v63L00 (L:2-140)
2d: CATH_2v63M00 (M:2-140)
2e: CATH_2v63N00 (N:2-140)
2f: CATH_2v63O00 (O:2-140)
2g: CATH_2v63P00 (P:2-140)
2h: CATH_2v63J00 (J:2-140)
3a: CATH_2v63A02 (A:149-462)
3b: CATH_2v63C02 (C:149-462)
3c: CATH_2v63D02 (D:149-462)
3d: CATH_2v63E02 (E:149-462)
3e: CATH_2v63F02 (F:149-462)
3f: CATH_2v63G02 (G:149-462)
3g: CATH_2v63H02 (H:149-462)
3h: CATH_2v63B02 (B:149-462)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.150, no name defined]
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055. Strain: 2137.
(5)
1a
2v63A01
A:22-148
1b
2v63C01
C:22-148
1c
2v63D01
D:22-148
1d
2v63E01
E:22-148
1e
2v63F01
F:22-148
1f
2v63G01
G:22-148
1g
2v63H01
H:22-148
1h
2v63B01
B:22-148
Topology
:
Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
(42)
Homologous Superfamily
:
[code=3.30.190.10, no name defined]
(35)
Chlamydomonas reinhardtii. Organism_taxid: 3055. Strain: 2137.
(5)
2a
2v63I00
I:2-140
2b
2v63K00
K:2-140
2c
2v63L00
L:2-140
2d
2v63M00
M:2-140
2e
2v63N00
N:2-140
2f
2v63O00
O:2-140
2g
2v63P00
P:2-140
2h
2v63J00
J:2-140
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Rubisco
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055. Strain: 2137.
(5)
3a
2v63A02
A:149-462
3b
2v63C02
C:149-462
3c
2v63D02
D:149-462
3d
2v63E02
E:149-462
3e
2v63F02
F:149-462
3f
2v63G02
G:149-462
3g
2v63H02
H:149-462
3h
2v63B02
B:149-462
[
close CATH info
]
Pfam Domains
(3, 24)
Info
all PFAM domains
1a: PFAM_RuBisCO_large_2v63H01 (H:154-462)
1b: PFAM_RuBisCO_large_2v63H02 (H:154-462)
1c: PFAM_RuBisCO_large_2v63H03 (H:154-462)
1d: PFAM_RuBisCO_large_2v63H04 (H:154-462)
1e: PFAM_RuBisCO_large_2v63H05 (H:154-462)
1f: PFAM_RuBisCO_large_2v63H06 (H:154-462)
1g: PFAM_RuBisCO_large_2v63H07 (H:154-462)
1h: PFAM_RuBisCO_large_2v63H08 (H:154-462)
2a: PFAM_RuBisCO_large_N_2v63H09 (H:21-146)
2b: PFAM_RuBisCO_large_N_2v63H10 (H:21-146)
2c: PFAM_RuBisCO_large_N_2v63H11 (H:21-146)
2d: PFAM_RuBisCO_large_N_2v63H12 (H:21-146)
2e: PFAM_RuBisCO_large_N_2v63H13 (H:21-146)
2f: PFAM_RuBisCO_large_N_2v63H14 (H:21-146)
2g: PFAM_RuBisCO_large_N_2v63H15 (H:21-146)
2h: PFAM_RuBisCO_large_N_2v63H16 (H:21-146)
3a: PFAM_RuBisCO_small_2v63P01 (P:11-127)
3b: PFAM_RuBisCO_small_2v63P02 (P:11-127)
3c: PFAM_RuBisCO_small_2v63P03 (P:11-127)
3d: PFAM_RuBisCO_small_2v63P04 (P:11-127)
3e: PFAM_RuBisCO_small_2v63P05 (P:11-127)
3f: PFAM_RuBisCO_small_2v63P06 (P:11-127)
3g: PFAM_RuBisCO_small_2v63P07 (P:11-127)
3h: PFAM_RuBisCO_small_2v63P08 (P:11-127)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: RuBisCO_large]
(36)
Family
:
RuBisCO_large
(36)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
1a
RuBisCO_large-2v63H01
H:154-462
1b
RuBisCO_large-2v63H02
H:154-462
1c
RuBisCO_large-2v63H03
H:154-462
1d
RuBisCO_large-2v63H04
H:154-462
1e
RuBisCO_large-2v63H05
H:154-462
1f
RuBisCO_large-2v63H06
H:154-462
1g
RuBisCO_large-2v63H07
H:154-462
1h
RuBisCO_large-2v63H08
H:154-462
Clan
:
no clan defined [family: RuBisCO_large_N]
(27)
Family
:
RuBisCO_large_N
(27)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
2a
RuBisCO_large_N-2v63H09
H:21-146
2b
RuBisCO_large_N-2v63H10
H:21-146
2c
RuBisCO_large_N-2v63H11
H:21-146
2d
RuBisCO_large_N-2v63H12
H:21-146
2e
RuBisCO_large_N-2v63H13
H:21-146
2f
RuBisCO_large_N-2v63H14
H:21-146
2g
RuBisCO_large_N-2v63H15
H:21-146
2h
RuBisCO_large_N-2v63H16
H:21-146
Clan
:
no clan defined [family: RuBisCO_small]
(23)
Family
:
RuBisCO_small
(23)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
3a
RuBisCO_small-2v63P01
P:11-127
3b
RuBisCO_small-2v63P02
P:11-127
3c
RuBisCO_small-2v63P03
P:11-127
3d
RuBisCO_small-2v63P04
P:11-127
3e
RuBisCO_small-2v63P05
P:11-127
3f
RuBisCO_small-2v63P06
P:11-127
3g
RuBisCO_small-2v63P07
P:11-127
3h
RuBisCO_small-2v63P08
P:11-127
[
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]
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