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2V4B
Biol. Unit 2
Info
Asym.Unit (101 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ADAMTS-1 CATALYTIC DOMAIN AND CYSTEINE-RICH DOMAIN (APO-FORM)
Authors
:
S. Gerhardt, G. Hassall, P. Hawtin, E. Mccall, L. Flavell, C. Minshull, D. Hargreaves, A. Ting, R. A. Pauptit, A. E. Parker, W. M. Abbott
Date
:
28 Jun 07 (Deposition) - 15 Jan 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Zymogen, Protease, Adamts-1, Hydrolase, Metalloprotease, Heparin-Binding, Metalloproteinase, Metzincin, Glycoprotein, Metal-Binding, Extracellular Matrix, Cleavage On Pair Of Basic Residues
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Gerhardt, G. Hassall, P. Hawtin, E. Mccall, L. Flavell, C. Minshull D. Hargreaves, A. Ting, R. A. Pauptit, A. E. Parker, W. M. Abbott
Crystal Structures Of Human Adamts-1 Reveal A Conserved Catalytic Domain And A Disintegrin-Like Domain With A Fold Homologous To Cysteine-Rich Domains.
J. Mol. Biol. V. 373 891 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: NICKEL (II) ION (NIa)
4b: NICKEL (II) ION (NIb)
4c: NICKEL (II) ION (NIc)
4d: NICKEL (II) ION (NId)
4e: NICKEL (II) ION (NIe)
4f: NICKEL (II) ION (NIf)
4g: NICKEL (II) ION (NIg)
4h: NICKEL (II) ION (NIh)
4i: NICKEL (II) ION (NIi)
4j: NICKEL (II) ION (NIj)
4k: NICKEL (II) ION (NIk)
4l: NICKEL (II) ION (NIl)
4m: NICKEL (II) ION (NIm)
4n: NICKEL (II) ION (NIn)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
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Sites
(16, 16)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: CC4 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
HIS B:401 , HIS B:405 , HIS B:411
BINDING SITE FOR RESIDUE ZN B1553
02
AC5
SOFTWARE
GLU A:494 , HOH A:2106 , HIS B:313 , HOH B:2003 , HOH B:2007
BINDING SITE FOR RESIDUE NI A1555
03
AC6
SOFTWARE
HIS A:280 , HOH A:2013 , ASP B:483 , HOH B:2057
BINDING SITE FOR RESIDUE NI A1556
04
AC8
SOFTWARE
ASP A:483 , HIS B:280 , HOH B:2010
BINDING SITE FOR RESIDUE CD B1554
05
AC9
SOFTWARE
HIS A:313 , HOH A:2012 , GLU B:494 , ASP B:495
BINDING SITE FOR RESIDUE NI B1555
06
BC1
SOFTWARE
GLU B:261 , ASP B:344 , ASP B:465 , HOH B:2024
BINDING SITE FOR RESIDUE CD B1556
07
BC2
SOFTWARE
GLU B:261 , ASP B:344 , ASP B:351 , CYS B:462 , ASP B:465 , HOH B:2046
BINDING SITE FOR RESIDUE NI B1557
08
BC3
SOFTWARE
HIS A:313 , HOH A:2006 , HOH A:2009 , HOH A:2024 , GLU B:494
BINDING SITE FOR RESIDUE NI A1558
09
BC7
SOFTWARE
GLU A:494 , ASP A:495 , HIS B:313
BINDING SITE FOR RESIDUE NI A1562
10
BC9
SOFTWARE
HIS A:525 , LEU B:519
BINDING SITE FOR RESIDUE NI A1564
11
CC1
SOFTWARE
HIS B:439 , ASP B:530 , ASN B:542 , HOH B:2071
BINDING SITE FOR RESIDUE MG B1558
12
CC2
SOFTWARE
HIS B:428 , HOH B:2036
BINDING SITE FOR RESIDUE NI B1559
13
CC3
SOFTWARE
HIS B:459 , HOH B:2045
BINDING SITE FOR RESIDUE NI B1560
14
CC4
SOFTWARE
HIS B:498 , HOH B:2064
BINDING SITE FOR RESIDUE NI B1561
15
CC7
SOFTWARE
ASP B:360 , LEU B:361 , CYS B:367 , THR B:369 , GLU B:389 , NA B:1563
BINDING SITE FOR RESIDUE NA B1562
16
CC9
SOFTWARE
ASP B:360 , CYS B:367 , NA B:1562
BINDING SITE FOR RESIDUE NA B1563
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (B:258-467)
2: ZINC_PROTEASE (B:398-407)
3: TSP1 (B:550-551|-|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ATS1_HUMAN
258-467
1
-
B:258-467
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ATS1_HUMAN
398-407
1
-
B:398-407
3
TSP1
PS50092
Thrombospondin type-1 (TSP1) repeat profile.
ATS1_HUMAN
559-614
908-967
854-905
1
-
B:550-551
-
-
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Reprolysin_2v4bB01 (B:258-467)
1b: PFAM_Reprolysin_2v4bB02 (B:258-467)
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Clan
:
Peptidase_MA
(251)
Family
:
Reprolysin
(9)
Homo sapiens (Human)
(9)
1a
Reprolysin-2v4bB01
B:258-467
1b
Reprolysin-2v4bB02
B:258-467
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Chain B
Asymmetric Unit 1
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