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2V4B
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ADAMTS-1 CATALYTIC DOMAIN AND CYSTEINE-RICH DOMAIN (APO-FORM)
Authors
:
S. Gerhardt, G. Hassall, P. Hawtin, E. Mccall, L. Flavell, C. Minshull, D. Hargreaves, A. Ting, R. A. Pauptit, A. E. Parker, W. M. Abbott
Date
:
28 Jun 07 (Deposition) - 15 Jan 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Zymogen, Protease, Adamts-1, Hydrolase, Metalloprotease, Heparin-Binding, Metalloproteinase, Metzincin, Glycoprotein, Metal-Binding, Extracellular Matrix, Cleavage On Pair Of Basic Residues
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Gerhardt, G. Hassall, P. Hawtin, E. Mccall, L. Flavell, C. Minshull D. Hargreaves, A. Ting, R. A. Pauptit, A. E. Parker, W. M. Abbott
Crystal Structures Of Human Adamts-1 Reveal A Conserved Catalytic Domain And A Disintegrin-Like Domain With A Fold Homologous To Cysteine-Rich Domains.
J. Mol. Biol. V. 373 891 2007
[
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Hetero Components
(5, 27)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: NICKEL (II) ION (NIa)
4b: NICKEL (II) ION (NIb)
4c: NICKEL (II) ION (NIc)
4d: NICKEL (II) ION (NId)
4e: NICKEL (II) ION (NIe)
4f: NICKEL (II) ION (NIf)
4g: NICKEL (II) ION (NIg)
4h: NICKEL (II) ION (NIh)
4i: NICKEL (II) ION (NIi)
4j: NICKEL (II) ION (NIj)
4k: NICKEL (II) ION (NIk)
4l: NICKEL (II) ION (NIl)
4m: NICKEL (II) ION (NIm)
4n: NICKEL (II) ION (NIn)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
4
Ligand/Ion
CADMIUM ION
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
NA
4
Ligand/Ion
SODIUM ION
4
NI
14
Ligand/Ion
NICKEL (II) ION
5
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:401 , HIS A:405 , HIS A:411 , HOH A:2133
BINDING SITE FOR RESIDUE ZN A1552
02
AC2
SOFTWARE
HIS B:401 , HIS B:405 , HIS B:411
BINDING SITE FOR RESIDUE ZN B1553
03
AC3
SOFTWARE
GLU A:261 , ASP A:344 , ASP A:465 , HOH A:2044 , HOH A:2091
BINDING SITE FOR RESIDUE CD A1553
04
AC4
SOFTWARE
GLU A:315 , GLU A:320 , HOH A:2027
BINDING SITE FOR RESIDUE CD A1554
05
AC5
SOFTWARE
GLU A:494 , HOH A:2106 , HIS B:313 , HOH B:2003 , HOH B:2007
BINDING SITE FOR RESIDUE NI A1555
06
AC6
SOFTWARE
HIS A:280 , HOH A:2013 , ASP B:483 , HOH B:2057
BINDING SITE FOR RESIDUE NI A1556
07
AC7
SOFTWARE
GLU A:261 , ASP A:344 , ASP A:351 , CYS A:462 , ASP A:465 , HOH A:2089
BINDING SITE FOR RESIDUE NI A1557
08
AC8
SOFTWARE
ASP A:483 , HIS B:280 , HOH B:2010
BINDING SITE FOR RESIDUE CD B1554
09
AC9
SOFTWARE
HIS A:313 , HOH A:2012 , GLU B:494 , ASP B:495
BINDING SITE FOR RESIDUE NI B1555
10
BC1
SOFTWARE
GLU B:261 , ASP B:344 , ASP B:465 , HOH B:2024
BINDING SITE FOR RESIDUE CD B1556
11
BC2
SOFTWARE
GLU B:261 , ASP B:344 , ASP B:351 , CYS B:462 , ASP B:465 , HOH B:2046
BINDING SITE FOR RESIDUE NI B1557
12
BC3
SOFTWARE
HIS A:313 , HOH A:2006 , HOH A:2009 , HOH A:2024 , GLU B:494
BINDING SITE FOR RESIDUE NI A1558
13
BC4
SOFTWARE
GLU A:320 , HOH A:2027
BINDING SITE FOR RESIDUE NI A1559
14
BC5
SOFTWARE
LYS A:308 , HIS A:339
BINDING SITE FOR RESIDUE MG A1560
15
BC6
SOFTWARE
HIS A:428 , HOH A:2075
BINDING SITE FOR RESIDUE NI A1561
16
BC7
SOFTWARE
GLU A:494 , ASP A:495 , HIS B:313
BINDING SITE FOR RESIDUE NI A1562
17
BC8
SOFTWARE
HIS A:498 , HOH A:2109
BINDING SITE FOR RESIDUE NI A1563
18
BC9
SOFTWARE
HIS A:525 , LEU B:519
BINDING SITE FOR RESIDUE NI A1564
19
CC1
SOFTWARE
HIS B:439 , ASP B:530 , ASN B:542 , HOH B:2071
BINDING SITE FOR RESIDUE MG B1558
20
CC2
SOFTWARE
HIS B:428 , HOH B:2036
BINDING SITE FOR RESIDUE NI B1559
21
CC3
SOFTWARE
HIS B:459 , HOH B:2045
BINDING SITE FOR RESIDUE NI B1560
22
CC4
SOFTWARE
HIS B:498 , HOH B:2064
BINDING SITE FOR RESIDUE NI B1561
23
CC5
SOFTWARE
HIS A:439 , ASP A:530 , ASN A:542 , HOH A:2126
BINDING SITE FOR RESIDUE MG A1565
24
CC6
SOFTWARE
ASP A:360 , LEU A:361 , CYS A:367 , THR A:369 , GLU A:389 , HOH A:2049
BINDING SITE FOR RESIDUE NA A1566
25
CC7
SOFTWARE
ASP B:360 , LEU B:361 , CYS B:367 , THR B:369 , GLU B:389 , NA B:1563
BINDING SITE FOR RESIDUE NA B1562
26
CC8
SOFTWARE
ASP A:360 , CYS A:367 , HOH A:2049
BINDING SITE FOR RESIDUE NA A1567
27
CC9
SOFTWARE
ASP B:360 , CYS B:367 , NA B:1562
BINDING SITE FOR RESIDUE NA B1563
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (A:258-467,B:258-467)
2: ZINC_PROTEASE (A:398-407,B:398-407)
3: TSP1 (A:550-551,B:550-551|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ATS1_HUMAN
258-467
2
A:258-467
B:258-467
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ATS1_HUMAN
398-407
2
A:398-407
B:398-407
3
TSP1
PS50092
Thrombospondin type-1 (TSP1) repeat profile.
ATS1_HUMAN
559-614
908-967
854-905
2
A:550-551
B:550-551
-
-
[
close PROSITE info
]
Exons
(5, 10)
Info
All Exons
Exon 1.5 (A:256-359 | B:256-359)
Exon 1.6c (A:360-404 | B:360-404)
Exon 1.7d (A:404-460 (gaps) | B:404-460 (gaps...)
Exon 1.8a (A:460-548 (gaps) | B:460-548 (gaps...)
Exon 1.8d (A:549-551 | B:549-552)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.5
2: Boundary 1.5/1.6c
3: Boundary 1.6c/1.7d
4: Boundary 1.7d/1.8a
5: Boundary 1.8a/1.8d
6: Boundary 1.8d/1.9a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000284984
1
ENSE00001017374
chr21:
28217728-28216544
1185
ATS1_HUMAN
1-244
244
0
-
-
1.5
ENST00000284984
5
ENSE00001017377
chr21:
28215004-28214658
347
ATS1_HUMAN
244-359
116
2
A:256-359
B:256-359
104
104
1.6c
ENST00000284984
6c
ENSE00001017373
chr21:
28214309-28214177
133
ATS1_HUMAN
360-404
45
2
A:360-404
B:360-404
45
45
1.7d
ENST00000284984
7d
ENSE00001017382
chr21:
28213484-28213317
168
ATS1_HUMAN
404-460
57
2
A:404-460 (gaps)
B:404-460 (gaps)
57
57
1.8a
ENST00000284984
8a
ENSE00001017378
chr21:
28212881-28212595
287
ATS1_HUMAN
460-555
96
2
A:460-548 (gaps)
B:460-548 (gaps)
89
89
1.8d
ENST00000284984
8d
ENSE00001247753
chr21:
28212380-28212194
187
ATS1_HUMAN
556-618
63
2
A:549-551
B:549-552
3
4
1.9a
ENST00000284984
9a
ENSE00001017375
chr21:
28212081-28211906
176
ATS1_HUMAN
618-676
59
0
-
-
1.9c
ENST00000284984
9c
ENSE00001247815
chr21:
28210933-28210758
176
ATS1_HUMAN
677-735
59
0
-
-
1.10b
ENST00000284984
10b
ENSE00001923806
chr21:
28210597-28208606
1992
ATS1_HUMAN
735-967
233
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Reprolysin_2v4bB01 (B:258-467)
1b: PFAM_Reprolysin_2v4bB02 (B:258-467)
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Clan
:
Peptidase_MA
(251)
Family
:
Reprolysin
(9)
Homo sapiens (Human)
(9)
1a
Reprolysin-2v4bB01
B:258-467
1b
Reprolysin-2v4bB02
B:258-467
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