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2V40
Asym. Unit
Info
Asym.Unit (85 KB)
Biol.Unit 1 (158 KB)
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(1)
Title
:
HUMAN ADENYLOSUCCINATE SYNTHETASE ISOZYME 2 IN COMPLEX WITH GDP
Authors
:
M. Welin, M. Moche, C. Arrowsmith, H. Berglund, R. Busam, R. Collins, L. G. Dahlgren, A. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg-Schiavone, I. Johansson, A. Kallas, T. Karlberg, T. Kotenyova, L. Lehtio, T. Nyman, D. Ogg, C. Persson, J. Sagemark, P. Stenmark, M. Sundstrom, A. G. Thorsell, L. Tresaugues, S. Van-Den-Berg, J. Weigelt, P. Nordlund, Structural Genomics Consortium (Sgc)
Date
:
27 Jun 07 (Deposition) - 10 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Ligase, Purine Biosynthesis, Adenylosuccinate Synthetase, Metal- Binding, Purine Metabolism, Nucleotide-Binding, Gdp, Adss2, Magnesium, Gtp-Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. Welin, M. Moche, C. Arrowsmith, H. Berglund, R. Busam, R. Collins, L. G. Dahlgren, A. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg-Schiavone, I. Johansson, A. Kallas, T. Karlberg, T. Kotenyova, L. Lehtio, T. Nyman, D. Ogg, C. Persson, J. Sagemark, P. Stenmark, M. Sundstrom, A. G. Thorsell, S. Van-Den-Berg, J. Weigelt, P. Nordlund
Human Adenylosuccinate Synthetase Isozyme 2 In Complex With Gdp
To Be Published
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:41 , GLY A:42 , LYS A:43 , GLY A:44 , LYS A:45 , HIS A:68 , LYS A:362 , ASP A:364 , ILE A:365 , GLY A:444 , VAL A:445 , GLY A:446 , LYS A:447 , HOH A:2029 , HOH A:2513 , HOH A:2532 , HOH A:2533 , HOH A:2534 , HOH A:2535 , HOH A:2536 , HOH A:2537
BINDING SITE FOR RESIDUE GDP A1457
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051881 (L179F, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051881
L
179
F
PURA2_HUMAN
Polymorphism
12134870
A
L
179
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ADENYLOSUCCIN_SYN_1 (A:37-44)
2: ADENYLOSUCCIN_SYN_2 (A:165-176)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADENYLOSUCCIN_SYN_1
PS01266
Adenylosuccinate synthetase GTP-binding site.
PURA2_HUMAN
37-44
1
A:37-44
2
ADENYLOSUCCIN_SYN_2
PS00513
Adenylosuccinate synthetase active site.
PURA2_HUMAN
165-176
1
A:165-176
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Exons
(13, 13)
Info
All Exons
Exon 1.1a (A:26-61)
Exon 1.4 (A:62-96)
Exon 1.5 (A:96-119)
Exon 1.6 (A:119-136)
Exon 1.7c (A:136-150)
Exon 1.8 (A:163-194)
Exon 1.9 (A:194-221)
Exon 1.10 (A:222-264)
Exon 1.11c (A:264-315)
Exon 1.12 (A:316-357)
Exon 1.13 (A:357-390)
Exon 1.14b (A:390-440)
Exon 1.15 (A:440-456)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7c
06: Boundary 1.7c/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11c
10: Boundary 1.11c/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14b
13: Boundary 1.14b/1.15
14: Boundary 1.15/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000366535
1a
ENSE00001441955
chr1:
244615436-244614937
500
PURA2_HUMAN
1-61
61
1
A:26-61
36
1.4
ENST00000366535
4
ENSE00001009299
chr1:
244601070-244600968
103
PURA2_HUMAN
62-96
35
1
A:62-96
35
1.5
ENST00000366535
5
ENSE00000961641
chr1:
244600195-244600127
69
PURA2_HUMAN
96-119
24
1
A:96-119
24
1.6
ENST00000366535
6
ENSE00000961642
chr1:
244595897-244595847
51
PURA2_HUMAN
119-136
18
1
A:119-136
18
1.7c
ENST00000366535
7c
ENSE00002038715
chr1:
244587689-244587623
67
PURA2_HUMAN
136-158
23
1
A:136-150
15
1.8
ENST00000366535
8
ENSE00001620692
chr1:
244587362-244587255
108
PURA2_HUMAN
158-194
37
1
A:163-194
32
1.9
ENST00000366535
9
ENSE00001611817
chr1:
244586218-244586137
82
PURA2_HUMAN
194-221
28
1
A:194-221
28
1.10
ENST00000366535
10
ENSE00001601694
chr1:
244583598-244583472
127
PURA2_HUMAN
222-264
43
1
A:222-264
43
1.11c
ENST00000366535
11c
ENSE00001800158
chr1:
244582216-244582062
155
PURA2_HUMAN
264-315
52
1
A:264-315
52
1.12
ENST00000366535
12
ENSE00001636166
chr1:
244581054-244580930
125
PURA2_HUMAN
316-357
42
1
A:316-357
42
1.13
ENST00000366535
13
ENSE00001592171
chr1:
244579380-244579283
98
PURA2_HUMAN
357-390
34
1
A:357-390
34
1.14b
ENST00000366535
14b
ENSE00001655298
chr1:
244574738-244574589
150
PURA2_HUMAN
390-440
51
1
A:390-440
51
1.15
ENST00000366535
15
ENSE00001746197
chr1:
244572940-244571796
1145
PURA2_HUMAN
440-456
17
1
A:440-456
17
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2v40a_ (A:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nitrogenase iron protein-like
(152)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2v40a_
A:
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2v40A01 (A:28-130,A:231-296)
2a: CATH_2v40A03 (A:297-456)
3a: CATH_2v40A02 (A:131-230)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Adenylosuccinate Synthetase; Chain A, domain 1
(36)
Homologous Superfamily
:
Adenylosuccinate Synthetase, subunit A, domain 1
(36)
Human (Homo sapiens)
(1)
1a
2v40A01
A:28-130,A:231-296
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Adenylosuccinate Synthetase; Chain A, domain 3
(36)
Homologous Superfamily
:
Adenylosuccinate Synthetase, subunit A, domain 3
(36)
Human (Homo sapiens)
(1)
2a
2v40A03
A:297-456
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Adenylosuccinate Synthetase, subunit A; domain 2
(36)
Homologous Superfamily
:
Adenylosuccinate Synthetase, subunit A, domain 2
(36)
Human (Homo sapiens)
(1)
3a
2v40A02
A:131-230
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Adenylsucc_synt_2v40A01 (A:30-454)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Adenylsucc_synt
(18)
Homo sapiens (Human)
(1)
1a
Adenylsucc_synt-2v40A01
A:30-454
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