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2V19
Asym. Unit
Info
Asym.Unit (161 KB)
Biol.Unit 1 (148 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE T. THERMOPHILUS DODECIN R45A MUTANT
Authors
:
B. Meissner, L. -O. Essen
Date
:
22 May 07 (Deposition) - 11 Sep 07 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.59
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Flavoprotein, Flavin Binding Protein, Dodecins, Flavin Dimer, Putative Storage Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Meissner, E. Schleicher, S. Weber, L. -O. Essen
The Dodecin From Thermus Thermophilus, A Bifunctional Cofactor Storage Protein.
J. Biol. Chem. V. 282 33142 2007
[
close entry info
]
Hetero Components
(3, 27)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: COENZYME A (COAa)
2b: COENZYME A (COAb)
2c: COENZYME A (COAc)
2d: COENZYME A (COAd)
2e: COENZYME A (COAe)
2f: COENZYME A (COAf)
2g: COENZYME A (COAg)
2h: COENZYME A (COAh)
2i: COENZYME A (COAi)
2j: COENZYME A (COAj)
2k: COENZYME A (COAk)
2l: COENZYME A (COAl)
3a: FLAVIN MONONUCLEOTIDE (FMNa)
3b: FLAVIN MONONUCLEOTIDE (FMNb)
3c: FLAVIN MONONUCLEOTIDE (FMNc)
3d: FLAVIN MONONUCLEOTIDE (FMNd)
3e: FLAVIN MONONUCLEOTIDE (FMNe)
3f: FLAVIN MONONUCLEOTIDE (FMNf)
3g: FLAVIN MONONUCLEOTIDE (FMNg)
3h: FLAVIN MONONUCLEOTIDE (FMNh)
3i: FLAVIN MONONUCLEOTIDE (FMNi)
3j: FLAVIN MONONUCLEOTIDE (FMNj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
5
Ligand/Ion
CHLORIDE ION
2
COA
12
Ligand/Ion
COENZYME A
3
FMN
10
Ligand/Ion
FLAVIN MONONUCLEOTIDE
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:3 , TYR A:5 , ASP A:37 , TRP A:38 , ARG A:65 , THR C:47 , GLN C:57 , FMN G:101 , VAL I:11 , GLN I:57 , VAL I:59
BINDING SITE FOR RESIDUE FMN A 101
02
AC2
SOFTWARE
ARG A:28 , THR A:32 , ARG A:34 , HIS A:35 , PHE A:64 , ARG A:65 , GLU A:67 , LYS E:6 , VAL E:8 , ARG E:28 , LEU E:33 , LEU E:66 , COA E:201 , HIS G:35 , LYS I:6 , LEU I:66 , COA I:201
BINDING SITE FOR RESIDUE COA A 201
03
AC3
SOFTWARE
ARG B:28 , THR B:32 , ARG B:34 , HIS B:35 , PHE B:64 , ARG B:65 , GLU B:67 , LYS F:6 , VAL F:8 , ARG F:28 , LEU F:66 , COA F:201 , LYS J:6 , LEU J:66 , COA J:201
BINDING SITE FOR RESIDUE COA B 201
04
AC4
SOFTWARE
TYR C:5 , ASP C:37 , TRP C:38 , ARG C:65 , THR F:47 , GLN F:57 , FMN J:101 , GLN K:57
BINDING SITE FOR RESIDUE FMN C 101
05
AC5
SOFTWARE
ARG C:28 , THR C:32 , ARG C:34 , HIS C:35 , ARG C:65 , GLU C:67 , LYS G:6 , VAL G:8 , ARG G:28 , ALA G:29 , LEU G:33 , PHE G:64 , LEU G:66 , COA G:201 , LYS K:6 , COA K:201
BINDING SITE FOR RESIDUE COA C 201
06
AC6
SOFTWARE
LYS D:3 , TYR D:5 , ASP D:37 , TRP D:38 , ARG D:65 , ALA E:45 , THR E:47 , GLN E:57 , FMN I:101
BINDING SITE FOR RESIDUE FMN D 101
07
AC7
SOFTWARE
ARG D:28 , THR D:32 , ARG D:34 , HIS D:35 , ARG D:65 , GLU D:67 , LYS H:6 , VAL H:8 , ARG H:28 , ALA H:29 , LEU H:33 , LEU H:66 , COA H:201 , LYS L:6 , LEU L:66 , COA L:201
BINDING SITE FOR RESIDUE COA D 201
08
AC8
SOFTWARE
GLN A:57 , ALA B:45 , THR B:47 , GLN B:57 , LYS E:3 , TYR E:5 , ASP E:37 , TRP E:38 , ARG E:65 , FMN F:101
BINDING SITE FOR RESIDUE FMN E 101
09
AC9
SOFTWARE
LYS A:6 , LEU A:66 , COA A:201 , ARG E:28 , THR E:32 , ARG E:34 , HIS E:35 , PHE E:64 , ARG E:65 , GLU E:67 , LYS I:6 , VAL I:8 , ARG I:28 , LEU I:33 , LEU I:66 , COA I:201
BINDING SITE FOR RESIDUE COA E 201
10
BC1
SOFTWARE
THR A:47 , GLN A:57 , GLN B:57 , FMN E:101 , LYS F:3 , TYR F:5 , ASP F:37 , TRP F:38 , ARG F:65
BINDING SITE FOR RESIDUE FMN F 101
11
BC2
SOFTWARE
LYS B:6 , LEU B:66 , COA B:201 , ARG F:28 , THR F:32 , ARG F:34 , HIS F:35 , PHE F:64 , ARG F:65 , GLU F:67 , LYS J:6 , VAL J:8 , ARG J:28 , ALA J:29 , LEU J:33 , LEU J:66 , COA J:201 , ARG K:65
BINDING SITE FOR RESIDUE COA F 201
12
BC3
SOFTWARE
FMN A:101 , GLN C:57 , LYS G:3 , TYR G:5 , ASP G:37 , TRP G:38 , ALA I:45 , THR I:47 , GLN I:57
BINDING SITE FOR RESIDUE FMN G 101
13
BC4
SOFTWARE
LYS C:6 , LEU C:66 , COA C:201 , ARG G:28 , THR G:32 , ARG G:34 , PHE G:64 , ARG G:65 , GLU G:67 , LYS K:6 , VAL K:8 , ARG K:28 , LEU K:33 , LEU K:66 , COA K:201
BINDING SITE FOR RESIDUE COA G 201
14
BC5
SOFTWARE
HIS B:35 , ARG B:65 , LYS D:6 , LEU D:66 , COA D:201 , ARG H:28 , THR H:32 , LEU H:33 , ARG H:34 , HIS H:35 , PHE H:64 , ARG H:65 , GLU H:67 , LYS L:6 , VAL L:8 , ARG L:28 , LEU L:66 , COA L:201
BINDING SITE FOR RESIDUE COA H 201
15
BC6
SOFTWARE
FMN D:101 , GLN E:57 , LYS I:3 , TYR I:5 , ASP I:37 , TRP I:38 , ARG I:65 , THR L:47 , GLN L:57
BINDING SITE FOR RESIDUE FMN I 101
16
BC7
SOFTWARE
LYS A:6 , VAL A:8 , ARG A:28 , LEU A:33 , LEU A:66 , COA A:201 , LYS E:6 , LEU E:66 , COA E:201 , ARG I:28 , THR I:32 , ARG I:34 , HIS I:35 , PHE I:64 , ARG I:65 , GLU I:67
BINDING SITE FOR RESIDUE COA I 201
17
BC8
SOFTWARE
FMN C:101 , GLN F:57 , LYS J:3 , TYR J:5 , ASP J:37 , TRP J:38 , ARG J:65 , THR K:47 , GLN K:57
BINDING SITE FOR RESIDUE FMN J 101
18
BC9
SOFTWARE
LYS B:6 , VAL B:8 , ARG B:28 , LEU B:33 , LEU B:66 , COA B:201 , LYS F:6 , LEU F:66 , COA F:201 , ARG J:28 , THR J:32 , LEU J:33 , ARG J:34 , HIS J:35 , ARG J:65 , GLU J:67
BINDING SITE FOR RESIDUE COA J 201
19
CC1
SOFTWARE
THR H:47 , GLN H:57 , LYS K:3 , TYR K:5 , ASP K:37 , TRP K:38 , ARG K:65 , FMN L:101
BINDING SITE FOR RESIDUE FMN K 101
20
CC2
SOFTWARE
LYS C:6 , VAL C:8 , ARG C:28 , ALA C:29 , LEU C:33 , LEU C:66 , COA C:201 , LYS G:6 , LEU G:66 , COA G:201 , ARG K:28 , THR K:32 , ARG K:34 , HIS K:35 , ARG K:65 , GLU K:67
BINDING SITE FOR RESIDUE COA K 201
21
CC3
SOFTWARE
ALA G:45 , THR G:47 , GLN G:57 , GLN H:57 , FMN K:101 , LYS L:3 , TYR L:5 , ASP L:37 , TRP L:38 , ARG L:65
BINDING SITE FOR RESIDUE FMN L 101
22
CC4
SOFTWARE
LYS D:6 , VAL D:8 , ARG D:28 , ALA D:29 , LEU D:33 , LEU D:66 , COA D:201 , LYS H:6 , LEU H:66 , COA H:201 , ARG L:28 , THR L:32 , ARG L:34 , HIS L:35 , ARG L:65 , GLU L:67
BINDING SITE FOR RESIDUE COA L 201
23
CC5
SOFTWARE
LYS C:6 , LYS G:6 , LYS K:6
BINDING SITE FOR RESIDUE CL C 1070
24
CC6
SOFTWARE
LYS B:6 , LYS F:6 , LYS J:6
BINDING SITE FOR RESIDUE CL B 1070
25
CC7
SOFTWARE
LYS A:6 , LYS E:6 , LYS I:6
BINDING SITE FOR RESIDUE CL A 1070
26
CC8
SOFTWARE
LYS D:6 , LYS H:6 , LYS L:6
BINDING SITE FOR RESIDUE CL D 1070
27
CC9
SOFTWARE
HIS F:35 , ARG F:65 , GLY K:2
BINDING SITE FOR RESIDUE CL F 1070
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d2v19b_ (B:)
1b: SCOP_d2v19c_ (C:)
1c: SCOP_d2v19d_ (D:)
1d: SCOP_d2v19e_ (E:)
1e: SCOP_d2v19f_ (F:)
1f: SCOP_d2v19g_ (G:)
1g: SCOP_d2v19h_ (H:)
1h: SCOP_d2v19i_ (I:)
1i: SCOP_d2v19j_ (J:)
1j: SCOP_d2v19k_ (K:)
1k: SCOP_d2v19l_ (L:)
2a: SCOP_d2v19a1 (A:2-68)
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)
(
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)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Dodecin subunit-like
(56)
Superfamily
:
Dodecin-like
(33)
Family
:
Dodecin-like
(29)
Protein domain
:
automated matches
(24)
Thermus thermophilus HB8 [TaxId: 300852]
(6)
1a
d2v19b_
B:
1b
d2v19c_
C:
1c
d2v19d_
D:
1d
d2v19e_
E:
1e
d2v19f_
F:
1f
d2v19g_
G:
1g
d2v19h_
H:
1h
d2v19i_
I:
1i
d2v19j_
J:
1j
d2v19k_
K:
1k
d2v19l_
L:
Protein domain
:
Uncharacterized protein TTHA1431
(3)
Thermus thermophilus [TaxId: 274]
(3)
2a
d2v19a1
A:2-68
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2v19A00 (A:2-68)
1b: CATH_2v19D00 (D:2-68)
1c: CATH_2v19E00 (E:2-68)
1d: CATH_2v19F00 (F:2-68)
1e: CATH_2v19H00 (H:2-68)
1f: CATH_2v19J00 (J:2-68)
1g: CATH_2v19B00 (B:2-69)
1h: CATH_2v19C00 (C:2-69)
1i: CATH_2v19G00 (G:2-69)
1j: CATH_2v19I00 (I:2-69)
1k: CATH_2v19K00 (K:2-69)
1l: CATH_2v19L00 (L:2-69)
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Topologies
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dodecin subunit-like
(24)
Homologous Superfamily
:
Flavin-binding protein dodecin
(24)
Thermus thermophilus. Organism_taxid: 300852. Strain: hb8.
(5)
1a
2v19A00
A:2-68
1b
2v19D00
D:2-68
1c
2v19E00
E:2-68
1d
2v19F00
F:2-68
1e
2v19H00
H:2-68
1f
2v19J00
J:2-68
1g
2v19B00
B:2-69
1h
2v19C00
C:2-69
1i
2v19G00
G:2-69
1j
2v19I00
I:2-69
1k
2v19K00
K:2-69
1l
2v19L00
L:2-69
[
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Pfam Domains
(0, 0)
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