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2RHP
Biol. Unit 1
Info
Asym.Unit (113 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
THE THROMBOSPONDIN-1 POLYMORPHISM ASN700SER ASSOCIATED WITH CORNOARY ARTERY DISEASE CAUSES LOCAL AND LONG-RANGING CHANGES IN PROTEIN STRUCTURE
Authors
:
C. B. Carlson, J. L. Keck, D. F. Mosher
Date
:
09 Oct 07 (Deposition) - 27 May 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Extracellular Matrix, Calcium-Binding, Glycosylated, Jelly-Roll, Egf- Like, Lectin-Like, Cell Adhesion, Egf-Like Domain, Glycoprotein, Heparin-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. B. Carlson, Y. Liu, J. L. Keck, D. F. Mosher
Influences Of The N700S Thrombospondin-1 Polymorphism On Protein Structure And Stability.
J. Biol. Chem. V. 283 20069 2008
[
close entry info
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1aa: CALCIUM ION (CAaa)
1ab: CALCIUM ION (CAab)
1ac: CALCIUM ION (CAac)
1ad: CALCIUM ION (CAad)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
1u: CALCIUM ION (CAu)
1v: CALCIUM ION (CAv)
1w: CALCIUM ION (CAw)
1x: CALCIUM ION (CAx)
1y: CALCIUM ION (CAy)
1z: CALCIUM ION (CAz)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:866 , ASN A:1069 , THR A:1071 , THR A:1144
BINDING SITE FOR RESIDUE NAG A 4
02
AC2
SOFTWARE
GLY A:552 , SER A:555 , GLY A:570 , TRP A:572
BINDING SITE FOR RESIDUE NAG A 6
03
AC3
SOFTWARE
ASP A:937 , ASP A:939 , ASP A:946 , CYS A:948 , ASN A:951 , ILE A:954 , SER A:955
BINDING SITE FOR RESIDUE CA A 1173
04
AC4
SOFTWARE
ASP A:935 , ASP A:937 , ASP A:939 , ILE A:941 , ASP A:946
BINDING SITE FOR RESIDUE CA A 2
05
AC5
SOFTWARE
ASP A:922 , ASP A:924 , ASP A:926 , ARG A:928 , ASP A:930
BINDING SITE FOR RESIDUE CA A 3
06
AC6
SOFTWARE
ASP A:899 , ASP A:901 , ASP A:903 , ASP A:910 , HOH A:1204
BINDING SITE FOR RESIDUE CA A 1174
07
AC7
SOFTWARE
ASP A:901 , ASP A:903 , ASP A:910 , CYS A:912 , ASN A:917
BINDING SITE FOR RESIDUE CA A 1175
08
AC8
SOFTWARE
ASP A:888 , ASP A:890 , ASP A:897 , ASP A:899 , ASN A:902
BINDING SITE FOR RESIDUE CA A 1176
09
AC9
SOFTWARE
ASP A:886 , ASP A:888 , ASP A:890 , GLN A:892 , ASP A:897
BINDING SITE FOR RESIDUE CA A 7
10
BC1
SOFTWARE
ASP A:894 , ASP A:897 , ASP A:900 , ASP A:907 , HOH A:1219
BINDING SITE FOR RESIDUE CA A 8
11
BC2
SOFTWARE
ASP A:865 , ASP A:867 , ASP A:874 , CYS A:876 , ILE A:879 , SER A:880 , ASN A:881
BINDING SITE FOR RESIDUE CA A 9
12
BC3
SOFTWARE
ASP A:863 , ASP A:865 , ASP A:867 , HIS A:869 , ASP A:874
BINDING SITE FOR RESIDUE CA A 10
13
BC4
SOFTWARE
ASP A:850 , ASP A:852 , ASP A:859 , ASN A:861
BINDING SITE FOR RESIDUE CA A 11
14
BC5
SOFTWARE
ASP A:848 , ASP A:850 , ASP A:852 , ASP A:859 , HOH A:1229
BINDING SITE FOR RESIDUE CA A 12
15
BC6
SOFTWARE
ASN A:993 , ASP A:1021 , ASP A:1023 , SER A:1156 , HOH A:1196
BINDING SITE FOR RESIDUE CA A 13
16
BC7
SOFTWARE
ASP A:1019 , ASP A:1021 , GLN A:1044 , ASP A:1106 , HOH A:1220
BINDING SITE FOR RESIDUE CA A 14
17
BC8
SOFTWARE
ASP A:1021 , ASP A:1022 , ASP A:1023 , GLN A:1047
BINDING SITE FOR RESIDUE CA A 15
18
BC9
SOFTWARE
ASP A:789 , ASP A:791 , ASN A:793 , GLU A:795
BINDING SITE FOR RESIDUE CA A 16
19
CC1
SOFTWARE
ASP A:827 , ASP A:829 , ASP A:836 , CYS A:838 , ASN A:843
BINDING SITE FOR RESIDUE CA A 17
20
CC2
SOFTWARE
ASP A:825 , ASP A:827 , ASP A:829 , ASP A:836
BINDING SITE FOR RESIDUE CA A 18
21
CC3
SOFTWARE
ASP A:804 , ASP A:806 , ASP A:813 , CYS A:815 , ASN A:820
BINDING SITE FOR RESIDUE CA A 19
22
CC4
SOFTWARE
ASP A:802 , ASP A:804 , ASP A:806 , ASP A:813
BINDING SITE FOR RESIDUE CA A 20
23
CC5
SOFTWARE
ASP A:768 , ASP A:770 , ASP A:777 , CYS A:779 , ASN A:784
BINDING SITE FOR RESIDUE CA A 21
24
CC6
SOFTWARE
ASP A:766 , ASP A:768 , ASP A:770 , ASP A:777
BINDING SITE FOR RESIDUE CA A 22
25
CC7
SOFTWARE
ASP A:745 , ASP A:747 , ASP A:754 , CYS A:756 , LEU A:759 , ASN A:761
BINDING SITE FOR RESIDUE CA A 23
26
CC8
SOFTWARE
ASP A:743 , ASP A:745 , ASP A:747 , ASP A:754
BINDING SITE FOR RESIDUE CA A 24
27
CC9
SOFTWARE
ASP A:730 , ASP A:732 , ASP A:734 , ILE A:736 , ASP A:741
BINDING SITE FOR RESIDUE CA A 25
28
DC1
SOFTWARE
ASP A:732 , ASP A:734 , ASP A:741 , ASP A:743 , ASN A:746
BINDING SITE FOR RESIDUE CA A 26
29
DC2
SOFTWARE
ASP A:738 , ASP A:741 , ASP A:744 , ASP A:751
BINDING SITE FOR RESIDUE CA A 27
30
DC3
SOFTWARE
ASP A:694 , ASP A:696 , ASP A:698 , TRP A:700 , ASP A:718
BINDING SITE FOR RESIDUE CA A 28
31
DC4
SOFTWARE
ASP A:696 , ASP A:698 , ASP A:718 , CYS A:720 , LEU A:723 , ASN A:725
BINDING SITE FOR RESIDUE CA A 29
32
DC5
SOFTWARE
ASP A:590 , LEU A:591 , GLU A:593 , ASN A:612 , THR A:613 , GLY A:616
BINDING SITE FOR RESIDUE CA A 30
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(4, 11)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (A:648-692)
2: EGF_2 (A:678-691)
3: TSP3 (A:921-956)
4: TSP_CTER (A:960-1172)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
TSP2_HUMAN
549-589
648-692
1
-
A:648-692
2
EGF_2
PS01186
EGF-like domain signature 2.
TSP2_HUMAN
678-691
1
A:678-691
3
TSP3
PS51234
Thrombospondin type-3 (TSP3) repeat profile.
TSP2_HUMAN
693-728
729-764
765-787
788-823
824-846
847-884
885-920
921-956
8
A:693-728
A:729-764
A:765-787
A:788-823
A:824-846
A:847-884
A:885-920
A:921-956
4
TSP_CTER
PS51236
Thrombospondin C-terminal domain profile.
TSP2_HUMAN
960-1172
1
A:960-1172
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
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Pfam Domains
(4, 10)
Info
all PFAM domains
1a: PFAM_EGF_3_2rhpA01 (A:652-691)
2a: PFAM_EGF_CA_2rhpA02 (A:590-646)
3a: PFAM_TSP_3_2rhpA03 (A:921-956)
3b: PFAM_TSP_3_2rhpA04 (A:921-956)
3c: PFAM_TSP_3_2rhpA05 (A:921-956)
3d: PFAM_TSP_3_2rhpA06 (A:921-956)
3e: PFAM_TSP_3_2rhpA07 (A:921-956)
3f: PFAM_TSP_3_2rhpA08 (A:921-956)
3g: PFAM_TSP_3_2rhpA09 (A:921-956)
4a: PFAM_TSP_C_2rhpA10 (A:974-1172)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EGF
(60)
Family
:
EGF_3
(4)
Homo sapiens (Human)
(2)
1a
EGF_3-2rhpA01
A:652-691
Family
:
EGF_CA
(18)
Homo sapiens (Human)
(14)
2a
EGF_CA-2rhpA02
A:590-646
Clan
:
no clan defined [family: TSP_3]
(3)
Family
:
TSP_3
(3)
Homo sapiens (Human)
(3)
3a
TSP_3-2rhpA03
A:921-956
3b
TSP_3-2rhpA04
A:921-956
3c
TSP_3-2rhpA05
A:921-956
3d
TSP_3-2rhpA06
A:921-956
3e
TSP_3-2rhpA07
A:921-956
3f
TSP_3-2rhpA08
A:921-956
3g
TSP_3-2rhpA09
A:921-956
Clan
:
no clan defined [family: TSP_C]
(3)
Family
:
TSP_C
(3)
Homo sapiens (Human)
(3)
4a
TSP_C-2rhpA10
A:974-1172
[
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]
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Asym.Unit (113 KB)
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