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2R6H
Biol. Unit 1
Info
Asym.Unit (411 KB)
Biol.Unit 1 (104 KB)
Biol.Unit 2 (104 KB)
Biol.Unit 3 (106 KB)
Biol.Unit 4 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DOMAIN COMPRISING THE NAD BINDING AND THE FAD BINDING REGIONS OF THE NADH:UBIQUINONE OXIDOREDUCTASE, NA TRANSLOCATING, F SUBUNIT FROM PORPHYROMONAS GINGIVALIS
Authors
:
Y. Kim, R. Mulligan, S. Moy, A. Joachimiak, Midwest Center For Struc Genomics (Mcsg)
Date
:
05 Sep 07 (Deposition) - 11 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Alpha-Beta-Alpha Sandwich, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Iron, Iron-Sulfur, Metal-Binding, Ubiquinone, Oxidoreductase
(Keyword Search:
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Reference
:
Y. Kim, R. Mulligan, S. Moy, A. Joachimiak
Crystal Structure Of The Domain Comprising The Regions Binding Nad And Fad From The Nadh:Ubiquinone Oxidoreductase Na Translocating, F Subunit From Porphyromonas Gingivalis.
To Be Published
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
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Label:
No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
MSE
11
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2r6hA02 (A:282-399)
1b: CATH_2r6hB02 (B:282-399)
1c: CATH_2r6hC02 (C:282-399)
1d: CATH_2r6hD02 (D:282-399)
2a: CATH_2r6hA01 (A:128-270)
2b: CATH_2r6hD01 (D:128-270)
2c: CATH_2r6hB01 (B:126-270)
2d: CATH_2r6hC01 (C:124-270)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module
(85)
Porphyromonas gingivalis w83. Organism_taxid: 242619. Strain: w83.
(1)
1a
2r6hA02
A:282-399
1b
2r6hB02
B:282-399
1c
2r6hC02
C:282-399
1d
2r6hD02
D:282-399
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Porphyromonas gingivalis w83. Organism_taxid: 242619. Strain: w83.
(1)
2a
2r6hA01
A:128-270
2b
2r6hD01
D:128-270
2c
2r6hB01
B:126-270
2d
2r6hC01
C:124-270
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_FAD_binding_6_2r6hD01 (D:196-274)
1b: PFAM_FAD_binding_6_2r6hD02 (D:196-274)
1c: PFAM_FAD_binding_6_2r6hD03 (D:196-274)
1d: PFAM_FAD_binding_6_2r6hD04 (D:196-274)
2a: PFAM_NAD_binding_1_2r6hD05 (D:283-394)
2b: PFAM_NAD_binding_1_2r6hD06 (D:283-394)
2c: PFAM_NAD_binding_1_2r6hD07 (D:283-394)
2d: PFAM_NAD_binding_1_2r6hD08 (D:283-394)
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Clan
:
FAD_Lum_binding
(30)
Family
:
FAD_binding_6
(24)
Porphyromonas gingivalis (Bacteroides gingivalis)
(1)
1a
FAD_binding_6-2r6hD01
D:196-274
1b
FAD_binding_6-2r6hD02
D:196-274
1c
FAD_binding_6-2r6hD03
D:196-274
1d
FAD_binding_6-2r6hD04
D:196-274
Clan
:
NAD_Ferredoxin
(30)
Family
:
NAD_binding_1
(30)
Porphyromonas gingivalis (Bacteroides gingivalis)
(1)
2a
NAD_binding_1-2r6hD05
D:283-394
2b
NAD_binding_1-2r6hD06
D:283-394
2c
NAD_binding_1-2r6hD07
D:283-394
2d
NAD_binding_1-2r6hD08
D:283-394
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Asym.Unit (411 KB)
Header - Asym.Unit
Biol.Unit 1 (104 KB)
Header - Biol.Unit 1
Biol.Unit 2 (104 KB)
Header - Biol.Unit 2
Biol.Unit 3 (106 KB)
Header - Biol.Unit 3
Biol.Unit 4 (103 KB)
Header - Biol.Unit 4
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