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2R61
Asym. Unit
Info
Asym.Unit (43 KB)
Biol.Unit 1 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE STAPHYLOCOCCAL SUPERANTIGEN-LIKE PROTEIN SSL5 IN COMPLEX WITH SIALYL-LEWIS X AT PH 7.4
Authors
:
H. M. Baker
Date
:
05 Sep 07 (Deposition) - 27 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ssl5, Superantigen-Like, Sialyl Lewis X, Sialic Acid Binding, Chips, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. M. Baker, I. Basu, M. C. Chung, T. Caradoc-Davies, J. D. Fraser, E. N. Baker
Crystal Structures Of The Staphylococcal Toxin Ssl5 In Complex With Sialyl Lewis X Reveal A Conserved Binding Site That Shares Common Features With Viral And Bacterial Sialic Acid Binding Proteins
J. Mol. Biol. V. 374 1298 2007
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Hetero Components
(7, 7)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-D-GALACTOSE (GALa)
4a: GLYCEROL (GOLa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6a: O-SIALIC ACID (SIAa)
7a: S,R MESO-TARTARIC ACID (SRTa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
4
GOL
1
Ligand/Ion
GLYCEROL
5
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SIA
1
Ligand/Ion
O-SIALIC ACID
7
SRT
1
Ligand/Ion
S,R MESO-TARTARIC ACID
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:27 , LEU A:28 , LYS A:29 , VAL A:31 , LEU A:137 , TYR A:173 , TYR A:174 , THR A:175 , ARG A:186 , ASP A:189 , GAL A:602 , HOH A:661 , HOH A:662 , HOH A:663
BINDING SITE FOR RESIDUE SIA A 601
2
AC2
SOFTWARE
ALA A:101 , LYS A:180 , GLN A:183 , HIS A:185 , ARG A:186 , GAL A:602 , FUC A:604 , HOH A:661
BINDING SITE FOR RESIDUE NAG A 603
3
AC3
SOFTWARE
ASN A:30 , LYS A:180 , SIA A:601 , NAG A:603 , FUC A:604 , HOH A:662 , HOH A:663
BINDING SITE FOR RESIDUE GAL A 602
4
AC4
SOFTWARE
ASN A:30 , LYS A:97 , GLU A:177 , LYS A:180 , GAL A:602 , NAG A:603
BINDING SITE FOR RESIDUE FUC A 604
5
AC5
SOFTWARE
LYS A:110 , ARG A:127
BINDING SITE FOR RESIDUE CL A 205
6
AC6
SOFTWARE
ARG A:35 , LEU A:65 , HIS A:124 , LYS A:126 , TYR A:147 , HOH A:630 , HOH A:634
BINDING SITE FOR RESIDUE SRT A 206
7
AC7
SOFTWARE
GLU A:116 , LYS A:160 , ASP A:161 , ASN A:202 , ARG A:204
BINDING SITE FOR RESIDUE GOL A 207
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2r61a1 (A:8-100)
2a: SCOP_d2r61a2 (A:101-204)
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Classes
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Superantigen toxins, N-terminal domain
(91)
Protein domain
:
Superantigen-like protein SET3
(3)
Staphylococcus aureus [TaxId: 1280]
(3)
1a
d2r61a1
A:8-100
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Superantigen toxins, C-terminal domain
(103)
Family
:
Superantigen toxins, C-terminal domain
(94)
Protein domain
:
Superantigen-like protein SET3
(3)
Staphylococcus aureus [TaxId: 1280]
(3)
2a
d2r61a2
A:101-204
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2r61A01 (A:8-22,A:98-204)
2a: CATH_2r61A02 (A:23-97)
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.120, no name defined]
(91)
Staphylococcus aureus. Organism_taxid: 1280. Strain: gl10.
(2)
1a
2r61A01
A:8-22,A:98-204
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.110, no name defined]
(136)
Staphylococcus aureus. Organism_taxid: 1280. Strain: gl10.
(2)
2a
2r61A02
A:23-97
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Stap_Strp_tox_C_2r61A01 (A:111-204)
2a: PFAM_DUF1954_2r61A02 (A:15-98)
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Clan
:
Ant-toxin_C
(48)
Family
:
Stap_Strp_tox_C
(48)
Staphylococcus aureus
(41)
1a
Stap_Strp_tox_C-2r61A01
A:111-204
Clan
:
no clan defined [family: DUF1954]
(9)
Family
:
DUF1954
(9)
Staphylococcus aureus
(8)
2a
DUF1954-2r61A02
A:15-98
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Chain A
Asymmetric Unit 1
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