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2QZY
Asym. Unit
Info
Asym.Unit (222 KB)
Biol.Unit 1 (110 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
THE STRUCTURE OF CHICKEN MITOCHONDRIAL PEPCK IN COMPLEX WITH PEP
Authors
:
T. Holyoak, S. M. Sullivan, T. Nowak
Date
:
17 Aug 07 (Deposition) - 04 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pepck, Kinase, Decarboxylase, Gluconeogenesis, Gtp-Binding, Lyase, Manganese, Mitochondrion, Nucleotide-Binding, Transit Peptide
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Holyoak, S. M. Sullivan, T. Nowak
Structural Insights Into The Mechanism Of Pepck Catalysis
Biochemistry V. 45 8254 2006
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: BETA-D-FRUCTOFURANOSYL 6-O-OCTANOY... (20Sa)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
4a: PHOSPHOENOLPYRUVATE (PEPa)
4b: PHOSPHOENOLPYRUVATE (PEPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
20S
1
Ligand/Ion
BETA-D-FRUCTOFURANOSYL 6-O-OCTANOYL-ALPHA-D-GLUCOPYRANOSIDE
2
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
MN
2
Ligand/Ion
MANGANESE (II) ION
4
PEP
2
Ligand/Ion
PHOSPHOENOLPYRUVATE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEPCK_GTP (A:303-311,B:303-311)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPCK_GTP
PS00505
Phosphoenolpyruvate carboxykinase (GTP) signature.
PCKGM_CHICK
303-311
2
A:303-311
B:303-311
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2qzya1 (A:34-278)
1b: SCOP_d2qzyb1 (B:34-278)
2a: SCOP_d2qzya2 (A:279-641)
2b: SCOP_d2qzyb2 (B:279-641)
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Protein Domains
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(
)
Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PEP carboxykinase N-terminal domain
(54)
Superfamily
:
PEP carboxykinase N-terminal domain
(54)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
1a
d2qzya1
A:34-278
1b
d2qzyb1
B:34-278
Fold
:
PEP carboxykinase-like
(61)
Superfamily
:
PEP carboxykinase-like
(61)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Chicken (Gallus gallus) [TaxId: 9031]
(3)
2a
d2qzya2
A:279-641
2b
d2qzyb2
B:279-641
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2qzyA01 (A:34-81,A:108-277)
1b: CATH_2qzyB01 (B:34-81,B:108-277)
2a: CATH_2qzyA03 (A:279-349,A:435-640)
2b: CATH_2qzyB03 (B:279-349,B:435-639)
3a: CATH_2qzyA02 (A:84-103,A:351-432)
3b: CATH_2qzyB02 (B:84-103,B:351-432)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Phosphoenolpyruvate Carboxykinase; domain 1
(42)
Homologous Superfamily
:
Phosphoenolpyruvate Carboxykinase, domain 1
(42)
Chicken (Gallus gallus)
(3)
1a
2qzyA01
A:34-81,A:108-277
1b
2qzyB01
B:34-81,B:108-277
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Phosphoenolpyruvate Carboxykinase; domain 3
(62)
Homologous Superfamily
:
[code=3.90.228.20, no name defined]
(42)
Chicken (Gallus gallus)
(3)
2a
2qzyA03
A:279-349,A:435-640
2b
2qzyB03
B:279-349,B:435-639
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
Phosphoenolpyruvate Carboxykinase; domain 2
(42)
Homologous Superfamily
:
Phosphoenolpyruvate Carboxykinase, domain 2
(42)
Chicken (Gallus gallus)
(3)
3a
2qzyA02
A:84-103,A:351-432
3b
2qzyB02
B:84-103,B:351-432
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PEPCK_2qzyB01 (B:47-641)
1b: PFAM_PEPCK_2qzyB02 (B:47-641)
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Clan
:
PEP-carboxyk
(36)
Family
:
PEPCK
(19)
Gallus gallus (Chicken)
(1)
1a
PEPCK-2qzyB01
B:47-641
1b
PEPCK-2qzyB02
B:47-641
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Asymmetric Unit 1
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Asym.Unit (222 KB)
Header - Asym.Unit
Biol.Unit 1 (110 KB)
Header - Biol.Unit 1
Biol.Unit 2 (105 KB)
Header - Biol.Unit 2
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