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2QXL
Asym. Unit
Info
Asym.Unit (210 KB)
Biol.Unit 1 (202 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF SSE1, A YEAST HSP110
Authors
:
W. A. Hendrickson, Q. Liu
Date
:
12 Aug 07 (Deposition) - 23 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.41
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hsp110, Hsp70, Molecular Chaperone, Atp State, Atp-Binding, Calmodulin-Binding, Nucleotide-Binding, Phosphorylation, Stress Response, Chaperone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Liu, W. A. Hendrickson
Insights Into Hsp70 Chaperone Activity From A Crystal Structure Of The Yeast Hsp110 Sse1.
Cell(Cambridge, Mass. ) V. 131 106 2007
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
K
2
Ligand/Ion
POTASSIUM ION
3
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ATP B:1001 , HOH B:1165 , HOH B:1215 , HOH B:1218 , HOH B:1220
BINDING SITE FOR RESIDUE MG B 1003
2
AC2
SOFTWARE
ATP A:1002 , HOH A:1067 , HOH A:1119
BINDING SITE FOR RESIDUE MG A 1004
3
AC3
SOFTWARE
ASP A:8 , ASN A:13 , ATP A:1002 , HOH A:1089
BINDING SITE FOR RESIDUE K A 1005
4
AC4
SOFTWARE
ASP B:8 , ASN B:13 , ATP B:1001 , HOH B:1037
BINDING SITE FOR RESIDUE K B 1006
5
AC5
SOFTWARE
GLY B:10 , ASN B:11 , ASN B:12 , ASN B:13 , LYS B:69 , GLY B:205 , HIS B:206 , SER B:207 , SER B:208 , GLY B:234 , GLU B:272 , LYS B:275 , LYS B:276 , SER B:279 , GLY B:342 , GLY B:343 , THR B:344 , ARG B:346 , ILE B:347 , MG B:1003 , K B:1006 , HOH B:1018 , HOH B:1028 , HOH B:1046 , HOH B:1056 , HOH B:1158 , HOH B:1165 , HOH B:1215 , HOH B:1218 , HOH B:1220 , HOH B:1224
BINDING SITE FOR RESIDUE ATP B 1001
6
AC6
SOFTWARE
GLY A:10 , ASN A:11 , ASN A:12 , ASN A:13 , LYS A:69 , GLY A:205 , HIS A:206 , SER A:207 , SER A:208 , GLY A:234 , GLU A:272 , LYS A:275 , LYS A:276 , SER A:279 , GLY A:342 , GLY A:343 , THR A:344 , ARG A:346 , MG A:1004 , K A:1005 , HOH A:1006 , HOH A:1022 , HOH A:1047 , HOH A:1054 , HOH A:1067 , HOH A:1079 , HOH A:1119
BINDING SITE FOR RESIDUE ATP A 1002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HSP70_2 (A:201-214,B:201-214)
2: HSP70_3 (A:338-352,B:338-352)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HSP70_2
PS00329
Heat shock hsp70 proteins family signature 2.
HSP7F_YEAST
201-214
2
A:201-214
B:201-214
2
HSP70_3
PS01036
Heat shock hsp70 proteins family signature 3.
HSP7F_YEAST
338-352
2
A:338-352
B:338-352
[
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:3-657 (gaps) | B:3-652 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YPL106C
1
YPL106C.1
XVI:352272-350191
2082
HSP7F_YEAST
1-693
693
2
A:3-657 (gaps)
B:3-652 (gaps)
655
650
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(5, 12)
Info
all CATH domains
1a: CATH_2qxlA02 (A:39-114)
1b: CATH_2qxlB02 (B:39-114)
2a: CATH_2qxlB01 (B:3-38,B:115-186,B:364-389)
2b: CATH_2qxlB03 (B:187-232,B:317-363)
2c: CATH_2qxlA01 (A:3-38,A:115-186,A:364-384)
2d: CATH_2qxlA03 (A:187-232,A:317-363)
3a: CATH_2qxlA04 (A:233-316)
3b: CATH_2qxlB04 (B:233-316)
4a: CATH_2qxlB06 (B:542-652)
4b: CATH_2qxlA06 (A:542-657)
5a: CATH_2qxlB05 (B:390-541)
5b: CATH_2qxlA05 (A:390-541)
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)
(
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Defensin A-like
(149)
Homologous Superfamily
:
[code=3.30.30.30, no name defined]
(60)
Baker's yeast (Saccharomyces cerevisiae)
(2)
1a
2qxlA02
A:39-114
1b
2qxlB02
B:39-114
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Baker's yeast (Saccharomyces cerevisiae)
(5)
2a
2qxlB01
B:3-38,B:115-186,B:364-389
2b
2qxlB03
B:187-232,B:317-363
2c
2qxlA01
A:3-38,A:115-186,A:364-384
2d
2qxlA03
A:187-232,A:317-363
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Baker's yeast (Saccharomyces cerevisiae)
(4)
3a
2qxlA04
A:233-316
3b
2qxlB04
B:233-316
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Substrate Binding Domain Of Dnak; Chain:A; Domain 2
(103)
Homologous Superfamily
:
[code=1.20.1270.10, no name defined]
(8)
Baker's yeast (Saccharomyces cerevisiae)
(1)
4a
2qxlB06
B:542-652
4b
2qxlA06
A:542-657
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Substrate Binding Domain Of DNAk; Chain A, domain 1
(20)
Homologous Superfamily
:
Substrate Binding Domain Of DNAk; Chain A, domain 1
(20)
Baker's yeast (Saccharomyces cerevisiae)
(2)
5a
2qxlB05
B:390-541
5b
2qxlA05
A:390-541
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_HSP70_2qxlB01 (B:4-644)
1b: PFAM_HSP70_2qxlB02 (B:4-644)
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(
)
Organisms
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)
(
)
Clan
:
Actin_ATPase
(173)
Family
:
HSP70
(41)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(4)
1a
HSP70-2qxlB01
B:4-644
1b
HSP70-2qxlB02
B:4-644
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set label size to 20 (allowed range: 1-58)
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