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2QM2
Asym. Unit
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Asym.Unit (52 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
PUTATIVE HOPJ TYPE III EFFECTOR PROTEIN FROM VIBRIO PARAHAEMOLYTICUS
Authors
:
Y. Kim, C. Chang, L. Volkart, J. Abdullah, A. Joachimiak, Midwest Cent Structural Genomics (Mcsg)
Date
:
13 Jul 07 (Deposition) - 31 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Alpha-Beta Structure, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
Y. Kim, C. Chang, L. Volkart, J. Abdullah, A. Joachimiak
Crystal Structure Of Putative Hopj Type Iii Effector Protei From Vibrio Parahaemolyticus.
To Be Published
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: POTASSIUM ION (Ka)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
4a: SODIUM ION (NAa)
5a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
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No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
K
1
Ligand/Ion
POTASSIUM ION
3
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
4
NA
1
Ligand/Ion
SODIUM ION
5
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:109 , GLU A:110 , ILE A:112 , ASN B:70 , HOH B:229 , HOH B:251
BINDING SITE FOR RESIDUE K A 201
2
AC2
SOFTWARE
LEU A:69 , TRP B:109 , GLU B:110 , ILE B:112 , HOH B:233 , HOH B:241
BINDING SITE FOR RESIDUE NA B 202
3
AC3
SOFTWARE
ASN A:57 , ASP A:97 , HIS A:98 , ASN B:57 , ASP B:97 , HIS B:98 , GLN B:99 , HOH B:218 , HOH B:226 , HOH B:237 , HOH B:255
BINDING SITE FOR RESIDUE TRS B 203
4
AC4
SOFTWARE
ALA A:65 , LEU A:68 , LEU A:69 , PHE A:114 , SER A:117 , ALA A:118 , LEU A:119 , HOH A:258
BINDING SITE FOR RESIDUE GOL A 204
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2qm2B00 (B:8-122)
1b: CATH_2qm2A00 (A:5-122)
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(
)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
pseudo Tubby roll
(2)
Homologous Superfamily
:
vpa0580 domain like
(2)
Vibrio parahaemolyticus rimd 2210633. Organism_taxid: 223926. Strain:rimd 2210633.
(2)
1a
2qm2B00
B:8-122
1b
2qm2A00
A:5-122
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_HopJ_2qm2B01 (B:9-119)
1b: PFAM_HopJ_2qm2B02 (B:9-119)
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Clan
:
no clan defined [family: HopJ]
(2)
Family
:
HopJ
(2)
Vibrio parahaemolyticus
(2)
1a
HopJ-2qm2B01
B:9-119
1b
HopJ-2qm2B02
B:9-119
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