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2QJO
Asym. Unit
Info
Asym.Unit (182 KB)
Biol.Unit 1 (347 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A BIFUNCTIONAL NMN ADENYLYLTRANSFERASE/ADP RIBOSE PYROPHOSPHATASE (NADM) COMPLEXED WITH ADPRP AND NAD FROM SYNECHOCYSTIS SP.
Authors
:
N. Huang, L. Sorci, X. Zhang, C. Brautigan, N. Raffaelli, G. Magni, N. V. A. Osterman, H. Zhang
Date
:
08 Jul 07 (Deposition) - 11 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Two Individual Domains, Transferase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Huang, L. Sorci, X. Zhang, C. A. Brautigam, X. Li, N. Raffaelli, G. Magni, N. V. Grishin, A. L. Osterman, H. Zhang
Bifunctional Nmn Adenylyltransferase/Adp-Ribose Pyrophosphatase: Structure And Function In Bacterial Nad Metabolism.
Structure V. 16 196 2008
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: ADENOSINE-5-DIPHOSPHORIBOSE (APRa)
1b: ADENOSINE-5-DIPHOSPHORIBOSE (APRb)
1c: ADENOSINE-5-DIPHOSPHORIBOSE (APRc)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3a: PYROPHOSPHATE 2- (POPa)
3b: PYROPHOSPHATE 2- (POPb)
3c: PYROPHOSPHATE 2- (POPc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
APR
3
Ligand/Ion
ADENOSINE-5-DIPHOSPHORIBOSE
2
NAD
3
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
POP
3
Ligand/Ion
PYROPHOSPHATE 2-
4
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:43 , ARG A:53 , HOH A:805
BINDING SITE FOR RESIDUE SO4 A 402
02
AC2
SOFTWARE
LYS A:4 , LYS A:31 , ASN A:104 , HOH A:731 , HOH A:794
BINDING SITE FOR RESIDUE SO4 A 403
03
AC3
SOFTWARE
HIS A:42 , ARG A:43 , ARG A:79 , HOH A:825 , HOH B:788
BINDING SITE FOR RESIDUE SO4 A 404
04
AC4
SOFTWARE
ASP A:316 , HIS B:42 , ARG B:43 , ARG B:79
BINDING SITE FOR RESIDUE SO4 B 401
05
AC5
SOFTWARE
TYR A:188 , PHE A:201 , THR A:203 , ASP A:205 , ARG A:219 , GLY A:232 , GLY A:233 , PHE A:234 , GLU A:248 , GLU A:252 , ARG A:277 , ARG A:280 , THR A:283 , GLU A:326 , HIS A:328 , HOH A:767 , HOH A:769 , HOH A:799 , HOH A:818 , HOH A:819 , TYR C:197
BINDING SITE FOR RESIDUE APR A 501
06
AC6
SOFTWARE
TYR A:10 , ILE A:11 , GLY A:12 , ARG A:13 , PHE A:14 , HIS A:21 , GLY A:40 , SER A:41 , ASP A:80 , TRP A:81 , ASP A:85 , TRP A:88 , HIS A:111 , TYR A:118 , TYR A:119 , GLY A:132 , HIS A:133 , TYR A:134 , PHE A:137 , HOH A:710 , HOH A:717 , HOH A:774 , HOH A:810
BINDING SITE FOR RESIDUE NAD A 601
07
AC7
SOFTWARE
ARG A:13 , LYS A:113 , SER A:138 , SER A:139 , THR A:140 , ARG A:143
BINDING SITE FOR RESIDUE POP A 701
08
AC8
SOFTWARE
TYR B:188 , TYR B:197 , PHE B:201 , THR B:203 , ASP B:205 , ARG B:219 , GLY B:232 , GLY B:233 , PHE B:234 , GLU B:248 , GLU B:252 , ARG B:277 , ARG B:280 , GLU B:326 , HIS B:328 , HOH B:730 , HOH B:775 , HOH B:791 , HOH B:799 , HOH B:834
BINDING SITE FOR RESIDUE APR B 502
09
AC9
SOFTWARE
TYR B:10 , ILE B:11 , GLY B:12 , ARG B:13 , PHE B:14 , HIS B:18 , HIS B:21 , GLY B:40 , SER B:41 , ASP B:80 , TRP B:81 , ASP B:85 , TRP B:88 , HIS B:111 , LYS B:113 , TYR B:118 , TYR B:119 , GLY B:132 , HIS B:133 , TYR B:134 , PHE B:137 , HOH B:734 , HOH B:741 , HOH B:745
BINDING SITE FOR RESIDUE NAD B 602
10
BC1
SOFTWARE
ARG B:13 , ARG B:49 , LYS B:113 , SER B:138 , SER B:139 , THR B:140 , ARG B:143
BINDING SITE FOR RESIDUE POP B 702
11
BC2
SOFTWARE
TYR A:197 , TYR C:188 , PHE C:201 , THR C:203 , ASP C:205 , ARG C:219 , GLY C:232 , GLY C:233 , PHE C:234 , GLU C:248 , GLU C:252 , ARG C:277 , ARG C:280 , GLU C:326 , HIS C:328 , HOH C:731 , HOH C:748
BINDING SITE FOR RESIDUE APR C 503
12
BC3
SOFTWARE
TYR C:10 , ILE C:11 , GLY C:12 , ARG C:13 , PHE C:14 , HIS C:18 , GLY C:40 , SER C:41 , ASP C:80 , TRP C:81 , SER C:84 , ASP C:85 , TRP C:88 , GLY C:110 , HIS C:111 , TYR C:118 , TYR C:119 , HIS C:133 , TYR C:134 , PHE C:137
BINDING SITE FOR RESIDUE NAD C 603
13
BC4
SOFTWARE
ARG C:13 , LYS C:113 , SER C:138 , SER C:139 , THR C:140 , ARG C:143
BINDING SITE FOR RESIDUE POP C 703
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: NUDIX (A:199-335,B:199-335,C:199-335)
2: NUDIX_BOX (A:233-254,B:233-254,C:233-254)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUDIX
PS51462
Nudix hydrolase domain profile.
NADM_SYNY3
199-335
3
A:199-335
B:199-335
C:199-335
2
NUDIX_BOX
PS00893
Nudix box signature.
NADM_SYNY3
233-254
3
A:233-254
B:233-254
C:233-254
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_CTP_transf_2_2qjoC01 (C:9-150)
1b: PFAM_CTP_transf_2_2qjoC02 (C:9-150)
1c: PFAM_CTP_transf_2_2qjoC03 (C:9-150)
2a: PFAM_NUDIX_2qjoC04 (C:202-337)
2b: PFAM_NUDIX_2qjoC05 (C:202-337)
2c: PFAM_NUDIX_2qjoC06 (C:202-337)
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Clans
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(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HUP
(230)
Family
:
CTP_transf_2
(36)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(1)
1a
CTP_transf_2-2qjoC01
C:9-150
1b
CTP_transf_2-2qjoC02
C:9-150
1c
CTP_transf_2-2qjoC03
C:9-150
Clan
:
NUDIX
(85)
Family
:
NUDIX
(78)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(1)
2a
NUDIX-2qjoC04
C:202-337
2b
NUDIX-2qjoC05
C:202-337
2c
NUDIX-2qjoC06
C:202-337
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Asymmetric Unit 1
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