2QJO - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A BIFUNCTIONAL NMN ADENYLYLTRANSFERASE/ADP RIBOSE PYROPHOSPHATASE (NADM) COMPLEXED WITH ADPRP AND NAD FROM SYNECHOCYSTIS SP.

Authors :   N. Huang, L. Sorci, X. Zhang, C. Brautigan, N. Raffaelli, G. Magni, N. V. A. Osterman, H. Zhang

Date :   08 Jul 07 (Deposition) - 11 Mar 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (2x)

Keywords :   Two Individual Domains, Transferase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Huang, L. Sorci, X. Zhang, C. A. Brautigam, X. Li, N. Raffaelli, G. Magni, N. V. Grishin, A. L. Osterman, H. Zhang
Bifunctional Nmn Adenylyltransferase/Adp-Ribose Pyrophosphatase: Structure And Function In Bacterial Nad Metabolism.
Structure V. 16 196 2008
PubMed-ID: 18275811 | Reference-DOI: 10.1016/J.STR.2007.11.017

Molecule 1 - BIFUNCTIONAL NMN ADENYLYLTRANSFERASE/NUDIX HYDROLASE
	Chains	:	A, B, C
	EC Number	:	2.7.7.1, 3.6.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PPROEX
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	SLR0787
	Organism Scientific	:	SYNECHOCYSTIS SP.
	Organism Taxid	:	1148
	Strain	:	PCC 6803
	Synonym	:	NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE, NAD(+) PYROPHOSPHORYLASE, NAD(+) DIPHOSPHORYLASE, ADP COMPOUNDS HYDROLASE.

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 13)

No.	Name	Count	Type	Full Name
1	APR	3	Ligand/Ion	ADENOSINE-5-DIPHOSPHORIBOSE
2	NAD	3	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3	POP	3	Ligand/Ion	PYROPHOSPHATE 2-
4	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 26)

No.	Name	Count	Type	Full Name
1	APR	6	Ligand/Ion	ADENOSINE-5-DIPHOSPHORIBOSE
2	NAD	6	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3	POP	6	Ligand/Ion	PYROPHOSPHATE 2-
4	SO4	8	Ligand/Ion	SULFATE ION

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:43 , ARG A:53 , HOH A:805	BINDING SITE FOR RESIDUE SO4 A 402
02	AC2	SOFTWARE	LYS A:4 , LYS A:31 , ASN A:104 , HOH A:731 , HOH A:794	BINDING SITE FOR RESIDUE SO4 A 403
03	AC3	SOFTWARE	HIS A:42 , ARG A:43 , ARG A:79 , HOH A:825 , HOH B:788	BINDING SITE FOR RESIDUE SO4 A 404
04	AC4	SOFTWARE	ASP A:316 , HIS B:42 , ARG B:43 , ARG B:79	BINDING SITE FOR RESIDUE SO4 B 401
05	AC5	SOFTWARE	TYR A:188 , PHE A:201 , THR A:203 , ASP A:205 , ARG A:219 , GLY A:232 , GLY A:233 , PHE A:234 , GLU A:248 , GLU A:252 , ARG A:277 , ARG A:280 , THR A:283 , GLU A:326 , HIS A:328 , HOH A:767 , HOH A:769 , HOH A:799 , HOH A:818 , HOH A:819 , TYR C:197	BINDING SITE FOR RESIDUE APR A 501
06	AC6	SOFTWARE	TYR A:10 , ILE A:11 , GLY A:12 , ARG A:13 , PHE A:14 , HIS A:21 , GLY A:40 , SER A:41 , ASP A:80 , TRP A:81 , ASP A:85 , TRP A:88 , HIS A:111 , TYR A:118 , TYR A:119 , GLY A:132 , HIS A:133 , TYR A:134 , PHE A:137 , HOH A:710 , HOH A:717 , HOH A:774 , HOH A:810	BINDING SITE FOR RESIDUE NAD A 601
07	AC7	SOFTWARE	ARG A:13 , LYS A:113 , SER A:138 , SER A:139 , THR A:140 , ARG A:143	BINDING SITE FOR RESIDUE POP A 701
08	AC8	SOFTWARE	TYR B:188 , TYR B:197 , PHE B:201 , THR B:203 , ASP B:205 , ARG B:219 , GLY B:232 , GLY B:233 , PHE B:234 , GLU B:248 , GLU B:252 , ARG B:277 , ARG B:280 , GLU B:326 , HIS B:328 , HOH B:730 , HOH B:775 , HOH B:791 , HOH B:799 , HOH B:834	BINDING SITE FOR RESIDUE APR B 502
09	AC9	SOFTWARE	TYR B:10 , ILE B:11 , GLY B:12 , ARG B:13 , PHE B:14 , HIS B:18 , HIS B:21 , GLY B:40 , SER B:41 , ASP B:80 , TRP B:81 , ASP B:85 , TRP B:88 , HIS B:111 , LYS B:113 , TYR B:118 , TYR B:119 , GLY B:132 , HIS B:133 , TYR B:134 , PHE B:137 , HOH B:734 , HOH B:741 , HOH B:745	BINDING SITE FOR RESIDUE NAD B 602
10	BC1	SOFTWARE	ARG B:13 , ARG B:49 , LYS B:113 , SER B:138 , SER B:139 , THR B:140 , ARG B:143	BINDING SITE FOR RESIDUE POP B 702
11	BC2	SOFTWARE	TYR A:197 , TYR C:188 , PHE C:201 , THR C:203 , ASP C:205 , ARG C:219 , GLY C:232 , GLY C:233 , PHE C:234 , GLU C:248 , GLU C:252 , ARG C:277 , ARG C:280 , GLU C:326 , HIS C:328 , HOH C:731 , HOH C:748	BINDING SITE FOR RESIDUE APR C 503
12	BC3	SOFTWARE	TYR C:10 , ILE C:11 , GLY C:12 , ARG C:13 , PHE C:14 , HIS C:18 , GLY C:40 , SER C:41 , ASP C:80 , TRP C:81 , SER C:84 , ASP C:85 , TRP C:88 , GLY C:110 , HIS C:111 , TYR C:118 , TYR C:119 , HIS C:133 , TYR C:134 , PHE C:137	BINDING SITE FOR RESIDUE NAD C 603
13	BC4	SOFTWARE	ARG C:13 , LYS C:113 , SER C:138 , SER C:139 , THR C:140 , ARG C:143	BINDING SITE FOR RESIDUE POP C 703

(no "SS Bond" information available for 2QJO)

Asymmetric Unit

No.	Residues
1	Gln A:15	-	Pro A:16
2	Lys A:222	-	Pro A:223
3	Gln B:15	-	Pro B:16
4	Lys B:222	-	Pro B:223
5	Gln C:15	-	Pro C:16
6	Leu C:122	-	Phe C:123
7	Gly C:132	-	His C:133
8	Pro C:135	-	Asp C:136
9	Lys C:222	-	Pro C:223

(no "SAP(SNP)/Variant" information available for 2QJO)

Asymmetric Unit (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NADM_SYNY3	199-335	3	A:199-335 B:199-335 C:199-335
2	NUDIX_BOX	PS00893	Nudix box signature.	NADM_SYNY3	233-254	3	A:233-254 B:233-254 C:233-254

Biological Unit 1 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NADM_SYNY3	199-335	6	A:199-335 B:199-335 C:199-335
2	NUDIX_BOX	PS00893	Nudix box signature.	NADM_SYNY3	233-254	6	A:233-254 B:233-254 C:233-254

(no "Exon" information available for 2QJO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:332
 aligned with NADM_SYNY3 | Q55928 from UniProtKB/Swiss-Prot  Length:339

    Alignment length:338
                              1                                                                                                                                                                                                                                                                                                                                               
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328        
           NADM_SYNY3     - --MQTKYQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAADTRNPWRSPERMAMIEACLSPQILKRVHFLTVRDWLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASSYYLNLFPQWDYLETGHYPDFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFV 336
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.....hhhhhhhhhhhhhheeeeeeeeeee..........hhhhhhhhhhh..hhhhhh.eeeeeee....hhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhh....eeee.......hhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.........eeeeeeeeee..eeeeee.........ee..eee.....hhhhhhhhhhhhhhh...hhhhhhhheeeeeee..........eeeeeeeee..........------.eeeeehhhhhhhhhhh..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NUDIX  PDB: A:199-335 UniProt: 199-335                                                                                                   - PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NUDIX_BOX             ---------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qjo A  -1 DPMQTKYQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAADTRNPWRSPERMAMIEACLSPQILKRVHFLTVRDWLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASSYYLNLFPQWDYLETGHYPDFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVK------KAWWMSLADLYAQEEQIYEDHFQIIQHFV 336
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298  |    308       318       328        
                                                                                                                                                                                                                                                                                                                                        301    308

Chain B from PDB  Type:PROTEIN  Length:336
 aligned with NADM_SYNY3 | Q55928 from UniProtKB/Swiss-Prot  Length:339

    Alignment length:336
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333      
           NADM_SYNY3     4 KYQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAADTRNPWRSPERMAMIEACLSPQILKRVHFLTVRDWLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASSYYLNLFPQWDYLETGHYPDFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFVSKV 339
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee.....hhhhhhhhhhhhhhh.eeeeeeeee..........hhhhhhhhhhh..hhhhhh.eeeeeee....hhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhh....eeee.......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh........eeeeeeeeeee..eeeeee.........ee..eee.....hhhhhhhhhhhhhhh...hhhhhhh.eeeeeee.........eeeeeeeeee.................eeeeehhhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NUDIX  PDB: B:199-335 UniProt: 199-335                                                                                                   ---- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NUDIX_BOX             ------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qjo B   4 KYQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAADTRNPWRSPERMAMIEACLSPQILKRVHFLTVRDWLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASSYYLNLFPQWDYLETGHYPDFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFVSKV 339
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333

Chain C from PDB  Type:PROTEIN  Length:327
 aligned with NADM_SYNY3 | Q55928 from UniProtKB/Swiss-Prot  Length:339

    Alignment length:334
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333    
           NADM_SYNY3     4 KYQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAADTRNPWRSPERMAMIEACLSPQILKRVHFLTVRDWLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASSYYLNLFPQWDYLETGHYPDFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFVS 337
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----CTP_transf_2-2qjoC01 C:9-150                                                                                                                  ---------------------------------------------------NUDIX-2qjoC04 C:202-337                                                                                                                  Pfam domains (1)
           Pfam domains (2) -----CTP_transf_2-2qjoC02 C:9-150                                                                                                                  ---------------------------------------------------NUDIX-2qjoC05 C:202-337                                                                                                                  Pfam domains (2)
           Pfam domains (3) -----CTP_transf_2-2qjoC03 C:9-150                                                                                                                  ---------------------------------------------------NUDIX-2qjoC06 C:202-337                                                                                                                  Pfam domains (3)
         Sec.struct. author ...eeeeee.....hhhhhhhhhhhhhhh.eeeeeeeee..........hhhhhhhhhhhh.hhhhhh.eeeeeee....hhhhhhhhhhhhhhhhhh....eeeee......hhhhh.....eeee.......hhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.........eeeeeeeeee..eeeeee.........ee..eee.....hhhhhhhhhhhhhhh...hhhhhhhheeeeeee..........eeeeeeeee.........-------.eeeeehhhhhhhhhhh..hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NUDIX  PDB: C:199-335 UniProt: 199-335                                                                                                   -- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NUDIX_BOX             ----------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qjo C   4 KYQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAADTRNPWRSPERMAMIEACLSPQILKRVHFLTVRDWLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASSYYLNLFPQWDYLETGHYPDFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAV-------KAWWMSLADLYAQEEQIYEDHFQIIQHFVS 337
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293      |  -    |  313       323       333    
                                                                                                                                                                                                                                                                                                                                  300     308

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2QJO)

(no "CATH Domain" information available for 2QJO)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HUP (230)

Family: CTP_transf_2 (36)

Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) (1)

1a	CTP_transf_2-2qjoC01	C:9-150
1b	CTP_transf_2-2qjoC02	C:9-150
1c	CTP_transf_2-2qjoC03	C:9-150

Clan: NUDIX (85)

Family: NUDIX (78)

Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) (1)

2a	NUDIX-2qjoC04	C:202-337
2b	NUDIX-2qjoC05	C:202-337
2c	NUDIX-2qjoC06	C:202-337

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (NADM_SYNY3 | Q55928)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0000309	nicotinamide-nucleotide adenylyltransferase activity	Catalysis of the reaction: ATP + nicotinamide nucleotide = diphosphate + NAD+.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0009435	NAD biosynthetic process	The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH.
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0019363	pyridine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Gln A:15 - Pro A:16	[ RasMol ]
		Gln B:15 - Pro B:16	[ RasMol ]
		Gln C:15 - Pro C:16	[ RasMol ]
		Gly C:132 - His C:133	[ RasMol ]
		Leu C:122 - Phe C:123	[ RasMol ]
		Lys A:222 - Pro A:223	[ RasMol ]
		Lys B:222 - Pro B:223	[ RasMol ]
		Lys C:222 - Pro C:223	[ RasMol ]
		Pro C:135 - Asp C:136	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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Access by PDB/NDB ID
	2qjo
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	NADM_SYNY3 \| Q55928
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	2.7.7.1
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		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	NADM_SYNY3 \| Q55928
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 2QJO)

(no "Related Entries Specified in the PDB File" available for 2QJO)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 13)

Sites (13, 13)

SS Bonds (0, 0)

Cis Peptide Bonds (9, 9)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 6)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (2, 6)

Gene Ontology (12, 12)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File