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Asym. Unit
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Asym.Unit (876 KB)
Biol.Unit 1 (293 KB)
Biol.Unit 2 (294 KB)
Biol.Unit 3 (294 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF MUTANT RHODOBACTER SPHAEROIDES BC1 WITH STIGMATELLIN AND ANTIMYCIN
Authors
:
L. Esser
Date
:
07 Jul 07 (Deposition) - 25 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: M,N,O,P,Q,R (1x)
Keywords
:
Cytochrome B, Tm Helices, Cytochrome C1, C-Terminal Tm Helix, Iron-Sulfur-Protein, N-Terminal Tm, Electron Transport, Heme, Membrane, Metal-Binding, Respiratory Chain, Transmembrane, Transport, 2Fe-2S, Inner Membrane, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Esser, M. Elberry, F. Zhou, C. A. Yu, L. Yu, D. Xia
Inhibitor-Complexed Structures Of The Cytochrome Bc1 From The Photosynthetic Bacterium Rhodobacter Sphaeroides.
J. Biol. Chem. V. 283 2846 2008
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(7, 54)
Info
All Hetero Components
1a: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMIN... (ANJa)
1b: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMIN... (ANJb)
1c: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMIN... (ANJc)
1d: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMIN... (ANJd)
1e: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMIN... (ANJe)
1f: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMIN... (ANJf)
2a: B-2-OCTYLGLUCOSIDE (BGLa)
2b: B-2-OCTYLGLUCOSIDE (BGLb)
2c: B-2-OCTYLGLUCOSIDE (BGLc)
2d: B-2-OCTYLGLUCOSIDE (BGLd)
2e: B-2-OCTYLGLUCOSIDE (BGLe)
2f: B-2-OCTYLGLUCOSIDE (BGLf)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3c: FE2/S2 (INORGANIC) CLUSTER (FESc)
3d: FE2/S2 (INORGANIC) CLUSTER (FESd)
3e: FE2/S2 (INORGANIC) CLUSTER (FESe)
3f: FE2/S2 (INORGANIC) CLUSTER (FESf)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
4d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
4f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
4g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
4h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
4i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
4j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
4k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
4l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
4m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
4n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
4o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
4p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
4q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
4r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
5a: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPa)
5b: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPb)
5c: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPc)
5d: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPd)
5e: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPe)
5f: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPf)
6a: STIGMATELLIN A (SMAa)
6b: STIGMATELLIN A (SMAb)
6c: STIGMATELLIN A (SMAc)
6d: STIGMATELLIN A (SMAd)
6e: STIGMATELLIN A (SMAe)
6f: STIGMATELLIN A (SMAf)
7a: STRONTIUM ION (SRa)
7b: STRONTIUM ION (SRb)
7c: STRONTIUM ION (SRc)
7d: STRONTIUM ION (SRd)
7e: STRONTIUM ION (SRe)
7f: STRONTIUM ION (SRf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANJ
6
Ligand/Ion
(2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMINO)-2-HYDROXYBENZOYL]AMINO}-8-HEXYL-2,6-DIMETHYL-4,9-DIOXO-1,5-DIOXONAN-7-YL (2S)-2-METHYLBUTANOATE
2
BGL
6
Ligand/Ion
B-2-OCTYLGLUCOSIDE
3
FES
6
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
4
HEM
18
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
LOP
6
Ligand/Ion
(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE
6
SMA
6
Ligand/Ion
STIGMATELLIN A
7
SR
6
Ligand/Ion
STRONTIUM ION
[
close Hetero Component info
]
Sites
(54, 54)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:269 , GLU B:14 , LYS B:227
BINDING SITE FOR RESIDUE BGL A 431
02
AC2
SOFTWARE
PHE D:269 , MET D:270 , GLY E:15 , PRO E:16 , LYS E:227
BINDING SITE FOR RESIDUE BGL D 431
03
AC3
SOFTWARE
PHE G:269 , GLU H:14 , LYS H:227
BINDING SITE FOR RESIDUE BGL G 431
04
AC4
SOFTWARE
PHE J:269 , GLY K:124 , LYS K:227
BINDING SITE FOR RESIDUE BGL J 431
05
AC5
SOFTWARE
PHE M:269 , GLY N:15 , PRO N:16 , ASN N:123 , GLY N:124 , LYS N:227
BINDING SITE FOR RESIDUE BGL M 431
06
AC6
SOFTWARE
PHE P:269 , PRO Q:16 , ASN Q:123 , LYS Q:227
BINDING SITE FOR RESIDUE BGL Q 257
07
AC7
SOFTWARE
ASP B:8 , VAL B:9 , GLU B:14 , GLU B:129
BINDING SITE FOR RESIDUE SR B 257
08
AC8
SOFTWARE
ASP E:8 , VAL E:9 , GLU E:14 , GLU E:129
BINDING SITE FOR RESIDUE SR E 257
09
AC9
SOFTWARE
ASP H:8 , VAL H:9 , GLU H:14 , GLU H:129
BINDING SITE FOR RESIDUE SR H 257
10
BC1
SOFTWARE
ASP K:8 , VAL K:9 , GLU K:14
BINDING SITE FOR RESIDUE SR K 257
11
BC2
SOFTWARE
ASP N:8 , VAL N:9 , GLU N:14 , GLU N:129
BINDING SITE FOR RESIDUE SR N 257
12
BC3
SOFTWARE
ASP Q:8 , VAL Q:9 , GLU Q:14 , GLU Q:129
BINDING SITE FOR RESIDUE SR Q 258
13
BC4
SOFTWARE
TRP A:45 , GLY A:48 , LEU A:51 , ALA A:52 , VAL A:108 , HIS A:111 , ARG A:114 , SER A:120 , ARG A:125 , THR A:128 , TRP A:129 , GLY A:132 , MET A:133 , ILE A:135 , VAL A:209 , HIS A:212 , PHE A:216 , GLY A:220 , ASN A:221 , ASN A:222 , ANJ A:504
BINDING SITE FOR RESIDUE HEM A 501
14
BC5
SOFTWARE
GLN A:58 , GLY A:62 , ILE A:63 , ARG A:94 , HIS A:97 , ALA A:98 , GLY A:146 , LEU A:149 , PRO A:150 , HIS A:198 , TYR A:199 , PRO A:202
BINDING SITE FOR RESIDUE HEM A 502
15
BC6
SOFTWARE
VAL B:35 , CYS B:36 , CYS B:39 , HIS B:40 , LEU B:94 , ASN B:96 , PRO B:98 , MET B:103 , ARG B:107 , TYR B:130 , LEU B:135 , PHE B:160 , ILE B:183 , ALA B:184 , MET B:185 , PRO B:188 , LEU B:189
BINDING SITE FOR RESIDUE HEM B 301
16
BC7
SOFTWARE
CYS C:129 , HIS C:131 , LEU C:132 , GLY C:133 , CYS C:149 , HIS C:152 , GLY C:153 , SER C:154
BINDING SITE FOR RESIDUE FES C 200
17
BC8
SOFTWARE
TRP D:45 , GLY D:48 , LEU D:51 , ALA D:52 , HIS D:111 , ILE D:112 , ARG D:114 , ARG D:125 , THR D:128 , TRP D:129 , GLY D:132 , MET D:133 , ILE D:135 , VAL D:209 , HIS D:212 , PHE D:216 , GLY D:220 , ASN D:221 , ASN D:222 , ANJ D:504
BINDING SITE FOR RESIDUE HEM D 501
18
BC9
SOFTWARE
GLN D:58 , GLY D:62 , ILE D:63 , TYR D:69 , ARG D:94 , HIS D:97 , PHE D:104 , GLY D:146 , LEU D:149 , PRO D:150 , HIS D:198 , TYR D:199 , PRO D:202
BINDING SITE FOR RESIDUE HEM D 502
19
CC1
SOFTWARE
CYS E:36 , CYS E:39 , HIS E:40 , LEU E:94 , ASN E:96 , PRO E:98 , MET E:103 , ARG E:107 , TYR E:130 , LEU E:135 , PHE E:160 , MET E:185 , PRO E:188 , LEU E:189
BINDING SITE FOR RESIDUE HEM E 301
20
CC2
SOFTWARE
CYS F:129 , HIS F:131 , LEU F:132 , GLY F:133 , CYS F:149 , HIS F:152 , SER F:154
BINDING SITE FOR RESIDUE FES F 200
21
CC3
SOFTWARE
TRP G:45 , GLY G:48 , LEU G:51 , ALA G:52 , HIS G:111 , ILE G:112 , ARG G:114 , ARG G:125 , TRP G:129 , GLY G:132 , MET G:133 , ILE G:135 , TYR G:136 , VAL G:209 , HIS G:212 , PHE G:216 , ASN G:222 , ANJ G:505
BINDING SITE FOR RESIDUE HEM G 501
22
CC4
SOFTWARE
GLN G:58 , GLY G:62 , ILE G:63 , VAL G:80 , ARG G:94 , HIS G:97 , ALA G:98 , PHE G:104 , GLY G:146 , LEU G:149 , PRO G:150 , HIS G:198 , TYR G:199 , PRO G:202
BINDING SITE FOR RESIDUE HEM G 502
23
CC5
SOFTWARE
VAL H:35 , CYS H:36 , CYS H:39 , HIS H:40 , LEU H:94 , ASN H:96 , PRO H:98 , MET H:103 , ARG H:107 , TYR H:130 , LEU H:135 , ILE H:183 , ALA H:184 , MET H:185
BINDING SITE FOR RESIDUE HEM H 301
24
CC6
SOFTWARE
CYS I:129 , HIS I:131 , LEU I:132 , GLY I:133 , CYS I:149 , HIS I:152 , SER I:154
BINDING SITE FOR RESIDUE FES I 200
25
CC7
SOFTWARE
TRP J:45 , GLY J:48 , LEU J:51 , ALA J:52 , HIS J:111 , ARG J:114 , ARG J:125 , TRP J:129 , GLY J:132 , MET J:133 , ILE J:135 , TYR J:136 , VAL J:209 , HIS J:212 , PHE J:216 , GLY J:220 , ASN J:222 , ANJ J:505
BINDING SITE FOR RESIDUE HEM J 501
26
CC8
SOFTWARE
GLN J:58 , GLY J:62 , ILE J:63 , ARG J:94 , HIS J:97 , THR J:142 , GLY J:146 , LEU J:149 , PRO J:150 , HIS J:198 , TYR J:199 , PRO J:202
BINDING SITE FOR RESIDUE HEM J 502
27
CC9
SOFTWARE
VAL K:35 , CYS K:36 , CYS K:39 , HIS K:40 , LEU K:94 , ASN K:96 , MET K:103 , ARG K:107 , TYR K:130 , LEU K:135 , PHE K:160 , ILE K:183 , ALA K:184 , MET K:185 , PRO K:188
BINDING SITE FOR RESIDUE HEM K 301
28
DC1
SOFTWARE
CYS L:129 , HIS L:131 , LEU L:132 , GLY L:133 , CYS L:149 , HIS L:152 , SER L:154
BINDING SITE FOR RESIDUE FES L 200
29
DC2
SOFTWARE
TRP M:45 , GLY M:48 , LEU M:51 , ALA M:52 , HIS M:111 , ARG M:114 , SER M:120 , ARG M:125 , THR M:128 , TRP M:129 , GLY M:132 , MET M:133 , ILE M:135 , VAL M:209 , HIS M:212 , PHE M:216 , GLY M:220 , ASN M:221 , ASN M:222 , ANJ M:505
BINDING SITE FOR RESIDUE HEM M 501
30
DC3
SOFTWARE
GLN M:58 , GLY M:62 , ILE M:63 , ARG M:94 , HIS M:97 , ALA M:98 , THR M:142 , GLY M:146 , LEU M:149 , PRO M:150 , HIS M:198 , TYR M:199 , PRO M:202
BINDING SITE FOR RESIDUE HEM M 502
31
DC4
SOFTWARE
VAL N:35 , CYS N:36 , CYS N:39 , HIS N:40 , LEU N:94 , ASN N:96 , PRO N:98 , ARG N:107 , TYR N:130 , LEU N:135 , PHE N:160 , ILE N:183 , ALA N:184 , MET N:185 , LEU N:189
BINDING SITE FOR RESIDUE HEM N 301
32
DC5
SOFTWARE
CYS O:129 , HIS O:131 , LEU O:132 , GLY O:133 , CYS O:149 , HIS O:152 , SER O:154
BINDING SITE FOR RESIDUE FES O 200
33
DC6
SOFTWARE
TRP P:45 , GLY P:48 , LEU P:51 , ALA P:52 , HIS P:111 , ARG P:114 , ARG P:125 , THR P:128 , TRP P:129 , GLY P:132 , MET P:133 , ILE P:135 , VAL P:209 , HIS P:212 , PHE P:216 , GLY P:220 , ASN P:222 , ANJ P:505
BINDING SITE FOR RESIDUE HEM P 501
34
DC7
SOFTWARE
GLN P:58 , GLY P:62 , ILE P:63 , ARG P:94 , HIS P:97 , THR P:142 , GLY P:146 , TYR P:147 , LEU P:149 , PRO P:150 , HIS P:198 , TYR P:199 , PRO P:202
BINDING SITE FOR RESIDUE HEM P 502
35
DC8
SOFTWARE
VAL Q:35 , CYS Q:36 , CYS Q:39 , HIS Q:40 , LEU Q:94 , ASN Q:96 , PRO Q:98 , MET Q:103 , ARG Q:107 , TYR Q:130 , LEU Q:135 , PHE Q:160 , ILE Q:183 , ALA Q:184 , MET Q:185 , LEU Q:189
BINDING SITE FOR RESIDUE HEM Q 301
36
DC9
SOFTWARE
CYS R:129 , HIS R:131 , LEU R:132 , GLY R:133 , CYS R:149 , CYS R:151 , HIS R:152 , SER R:154
BINDING SITE FOR RESIDUE FES R 200
37
EC1
SOFTWARE
PHE A:144 , MET A:154 , GLY A:158 , VAL A:161 , ILE A:162 , VAL A:293 , PRO A:294 , GLU A:295 , PHE A:298 , TYR A:302 , MET A:336 , CYS F:151 , HIS F:152
BINDING SITE FOR RESIDUE SMA A 1
38
EC2
SOFTWARE
HIS C:152 , LEU D:137 , GLY D:158 , VAL D:161 , ILE D:162 , VAL D:293 , PRO D:294 , GLU D:295 , PHE D:298 , TYR D:302 , MET D:336 , PHE D:337
BINDING SITE FOR RESIDUE SMA D 2
39
EC3
SOFTWARE
PHE G:144 , MET G:145 , GLY G:158 , VAL G:161 , ILE G:162 , VAL G:293 , PRO G:294 , GLU G:295 , PHE G:298 , TYR G:302 , MET G:336 , PHE G:337 , HIS L:152
BINDING SITE FOR RESIDUE SMA G 503
40
EC4
SOFTWARE
CYS I:151 , HIS I:152 , MET J:140 , MET J:145 , GLY J:158 , VAL J:161 , ILE J:162 , LEU J:180 , PHE J:194 , VAL J:293 , PRO J:294 , GLU J:295 , PHE J:298 , TYR J:302 , MET J:336 , ILE J:340
BINDING SITE FOR RESIDUE SMA J 503
41
EC5
SOFTWARE
LEU M:137 , PHE M:144 , MET M:145 , GLY M:158 , VAL M:161 , ILE M:162 , PHE M:194 , VAL M:293 , PRO M:294 , GLU M:295 , PHE M:298 , TYR M:302 , MET M:336 , HIS R:152
BINDING SITE FOR RESIDUE SMA M 503
42
EC6
SOFTWARE
HIS O:152 , PHE P:144 , GLY P:158 , VAL P:161 , ILE P:162 , LEU P:180 , VAL P:293 , PRO P:294 , GLU P:295 , PHE P:298 , TYR P:302 , MET P:336
BINDING SITE FOR RESIDUE SMA P 503
43
EC7
SOFTWARE
LEU A:103 , ILE A:106 , PHE A:113 , TYR A:117 , TYR A:118 , PHE A:263 , ARG A:358 , PHE A:374
BINDING SITE FOR RESIDUE LOP A 503
44
EC8
SOFTWARE
MET D:44 , LEU D:103 , PHE D:113 , TYR D:117 , TYR D:118 , PHE D:263 , ARG D:358 , PHE D:374
BINDING SITE FOR RESIDUE LOP D 503
45
EC9
SOFTWARE
MET G:44 , TRP G:47 , LEU G:103 , PHE G:113 , TYR G:117 , TYR G:118 , PHE G:263 , TRP G:296 , ARG G:358 , PHE G:367
BINDING SITE FOR RESIDUE LOP G 504
46
FC1
SOFTWARE
ASN J:42 , PHE J:113 , ARG J:114 , TYR J:117 , TYR J:118 , VAL J:262 , ARG J:358 , PHE J:374
BINDING SITE FOR RESIDUE LOP J 504
47
FC2
SOFTWARE
MET M:44 , LEU M:103 , PHE M:113 , ARG M:114 , TYR M:117 , TYR M:118 , ARG M:358 , TRP M:368 , PHE M:374
BINDING SITE FOR RESIDUE LOP M 504
48
FC3
SOFTWARE
MET P:44 , LEU P:103 , PHE P:113 , TYR P:117 , TYR P:118 , PHE P:263 , LEU P:274 , ARG P:358 , TRP P:368 , PHE P:374
BINDING SITE FOR RESIDUE LOP P 504
49
FC4
SOFTWARE
TRP A:45 , VAL A:49 , ALA A:52 , VAL A:56 , VAL A:209 , ILE A:213 , PHE A:216 , ASN A:221 , PHE A:244 , ASP A:252 , HEM A:501
BINDING SITE FOR RESIDUE ANJ A 504
50
FC5
SOFTWARE
ALA D:29 , TRP D:45 , VAL D:49 , ALA D:52 , ILE D:213 , PHE D:216 , PHE D:244 , ASP D:252 , HEM D:501
BINDING SITE FOR RESIDUE ANJ D 504
51
FC6
SOFTWARE
TRP G:45 , VAL G:49 , ALA G:52 , ILE G:213 , PHE G:216 , PHE G:244 , PHE G:248 , ASP G:252 , HEM G:501
BINDING SITE FOR RESIDUE ANJ G 505
52
FC7
SOFTWARE
ALA J:29 , TRP J:45 , VAL J:49 , ALA J:52 , ILE J:213 , PHE J:216 , PHE J:244 , ASP J:252 , HEM J:501
BINDING SITE FOR RESIDUE ANJ J 505
53
FC8
SOFTWARE
THR M:32 , TRP M:45 , VAL M:49 , ALA M:52 , ILE M:213 , PHE M:216 , ASN M:221 , PHE M:244 , ASP M:252 , HEM M:501
BINDING SITE FOR RESIDUE ANJ M 505
54
FC9
SOFTWARE
ALA P:29 , TRP P:45 , VAL P:49 , ALA P:52 , LEU P:55 , ILE P:213 , PHE P:216 , PHE P:244 , PHE P:248 , ASP P:252 , HEM P:501
BINDING SITE FOR RESIDUE ANJ P 505
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 24)
Info
All PROSITE Patterns/Profiles
1: CYTB_NTER (A:15-225,D:15-225,G:15-225,J:15-22...)
2: CYTC (B:23-142,E:23-142,H:23-142,K:23-14...)
3: RIESKE (C:117-185,F:117-185,I:117-185,L:11...)
4: CYTB_CTER (A:234-422,D:234-422,G:234-422,J:23...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTB_NTER
PS51002
Cytochrome b/b6 N-terminal region profile.
CYB_RHOSH
15-225
6
A:15-225
D:15-225
G:15-225
J:15-225
M:15-225
P:15-225
2
CYTC
PS51007
Cytochrome c family profile.
CY1_RHOSH
45-164
6
B:23-142
E:23-142
H:23-142
K:23-142
N:23-142
Q:23-142
3
RIESKE
PS51296
Rieske [2Fe-2S] iron-sulfur domain profile.
UCRI_RHOSH
117-185
6
C:117-185
F:117-185
I:117-185
L:117-185
O:117-185
R:117-185
4
CYTB_CTER
PS51003
Cytochrome b/b6 C-terminal region profile.
CYB_RHOSH
234-422
6
A:234-422
D:234-422
G:234-422
J:234-422
M:234-422
P:234-422
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
(5, 30)
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all CATH domains
1a: CATH_2qjkB01 (B:1-221)
1b: CATH_2qjkE01 (E:1-221)
1c: CATH_2qjkH01 (H:1-221)
1d: CATH_2qjkK01 (K:1-221)
1e: CATH_2qjkN01 (N:1-221)
1f: CATH_2qjkQ01 (Q:1-221)
2a: CATH_2qjkA00 (A:3-430)
2b: CATH_2qjkM00 (M:3-430)
2c: CATH_2qjkP00 (P:3-430)
2d: CATH_2qjkD00 (D:3-430)
2e: CATH_2qjkG00 (G:3-430)
2f: CATH_2qjkJ00 (J:3-430)
3a: CATH_2qjkB02 (B:222-256)
3b: CATH_2qjkE02 (E:222-256)
3c: CATH_2qjkH02 (H:222-256)
3d: CATH_2qjkK02 (K:222-256)
3e: CATH_2qjkN02 (N:222-256)
3f: CATH_2qjkQ02 (Q:222-256)
4a: CATH_2qjkC01 (C:9-41)
4b: CATH_2qjkF01 (F:9-41)
4c: CATH_2qjkI01 (I:9-41)
4d: CATH_2qjkL01 (L:9-41)
4e: CATH_2qjkO01 (O:9-41)
4f: CATH_2qjkR01 (R:9-41)
5a: CATH_2qjkC02 (C:42-187)
5b: CATH_2qjkF02 (F:42-187)
5c: CATH_2qjkI02 (I:42-187)
5d: CATH_2qjkL02 (L:42-187)
5e: CATH_2qjkO02 (O:42-187)
5f: CATH_2qjkR02 (R:42-187)
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Homologous Superfamilies
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)
Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
1a
2qjkB01
B:1-221
1b
2qjkE01
E:1-221
1c
2qjkH01
H:1-221
1d
2qjkK01
K:1-221
1e
2qjkN01
N:1-221
1f
2qjkQ01
Q:1-221
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome Bc1 Complex; Chain C
(51)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain C
(51)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
2a
2qjkA00
A:3-430
2b
2qjkM00
M:3-430
2c
2qjkP00
P:3-430
2d
2qjkD00
D:3-430
2e
2qjkG00
G:3-430
2f
2qjkJ00
J:3-430
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.100, no name defined]
(56)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
3a
2qjkB02
B:222-256
3b
2qjkE02
E:222-256
3c
2qjkH02
H:222-256
3d
2qjkK02
K:222-256
3e
2qjkN02
N:222-256
3f
2qjkQ02
Q:222-256
Homologous Superfamily
:
Single helix bin
(16)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(4)
4a
2qjkC01
C:9-41
4b
2qjkF01
F:9-41
4c
2qjkI01
I:9-41
4d
2qjkL01
L:9-41
4e
2qjkO01
O:9-41
4f
2qjkR01
R:9-41
Class
:
Mainly Beta
(13760)
Architecture
:
3-layer Sandwich
(102)
Topology
:
Rieske Iron-sulfur Protein
(99)
Homologous Superfamily
:
'Rieske'-like iron-sulphur domains
(99)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(10)
5a
2qjkC02
C:42-187
5b
2qjkF02
F:42-187
5c
2qjkI02
I:42-187
5d
2qjkL02
L:42-187
5e
2qjkO02
O:42-187
5f
2qjkR02
R:42-187
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Pfam Domains
(5, 30)
Info
all PFAM domains
1a: PFAM_Cytochrom_B_N_2_2qjkP01 (P:102-277)
1b: PFAM_Cytochrom_B_N_2_2qjkP02 (P:102-277)
1c: PFAM_Cytochrom_B_N_2_2qjkP03 (P:102-277)
1d: PFAM_Cytochrom_B_N_2_2qjkP04 (P:102-277)
1e: PFAM_Cytochrom_B_N_2_2qjkP05 (P:102-277)
1f: PFAM_Cytochrom_B_N_2_2qjkP06 (P:102-277)
2a: PFAM_Cytochrom_C1_2qjkQ01 (Q:11-255)
2b: PFAM_Cytochrom_C1_2qjkQ02 (Q:11-255)
2c: PFAM_Cytochrom_C1_2qjkQ03 (Q:11-255)
2d: PFAM_Cytochrom_C1_2qjkQ04 (Q:11-255)
2e: PFAM_Cytochrom_C1_2qjkQ05 (Q:11-255)
2f: PFAM_Cytochrom_C1_2qjkQ06 (Q:11-255)
3a: PFAM_Rieske_2qjkR01 (R:95-180)
3b: PFAM_Rieske_2qjkR02 (R:95-180)
3c: PFAM_Rieske_2qjkR03 (R:95-180)
3d: PFAM_Rieske_2qjkR04 (R:95-180)
3e: PFAM_Rieske_2qjkR05 (R:95-180)
3f: PFAM_Rieske_2qjkR06 (R:95-180)
4a: PFAM_UCR_Fe_S_N_2qjkR07 (R:9-41)
4b: PFAM_UCR_Fe_S_N_2qjkR08 (R:9-41)
4c: PFAM_UCR_Fe_S_N_2qjkR09 (R:9-41)
4d: PFAM_UCR_Fe_S_N_2qjkR10 (R:9-41)
4e: PFAM_UCR_Fe_S_N_2qjkR11 (R:9-41)
4f: PFAM_UCR_Fe_S_N_2qjkR12 (R:9-41)
5a: PFAM_Cytochrom_B_C_2qjkP07 (P:282-416)
5b: PFAM_Cytochrom_B_C_2qjkP08 (P:282-416)
5c: PFAM_Cytochrom_B_C_2qjkP09 (P:282-416)
5d: PFAM_Cytochrom_B_C_2qjkP10 (P:282-416)
5e: PFAM_Cytochrom_B_C_2qjkP11 (P:282-416)
5f: PFAM_Cytochrom_B_C_2qjkP12 (P:282-416)
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Organisms
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Clan
:
2heme_cytochrom
(31)
Family
:
Cytochrom_B_N_2
(27)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(3)
1a
Cytochrom_B_N_2-2qjkP01
P:102-277
1b
Cytochrom_B_N_2-2qjkP02
P:102-277
1c
Cytochrom_B_N_2-2qjkP03
P:102-277
1d
Cytochrom_B_N_2-2qjkP04
P:102-277
1e
Cytochrom_B_N_2-2qjkP05
P:102-277
1f
Cytochrom_B_N_2-2qjkP06
P:102-277
Clan
:
Cytochrome-c
(108)
Family
:
Cytochrom_C1
(24)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(3)
2a
Cytochrom_C1-2qjkQ01
Q:11-255
2b
Cytochrom_C1-2qjkQ02
Q:11-255
2c
Cytochrom_C1-2qjkQ03
Q:11-255
2d
Cytochrom_C1-2qjkQ04
Q:11-255
2e
Cytochrom_C1-2qjkQ05
Q:11-255
2f
Cytochrom_C1-2qjkQ06
Q:11-255
Clan
:
ISP-domain
(54)
Family
:
Rieske
(53)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(8)
3a
Rieske-2qjkR01
R:95-180
3b
Rieske-2qjkR02
R:95-180
3c
Rieske-2qjkR03
R:95-180
3d
Rieske-2qjkR04
R:95-180
3e
Rieske-2qjkR05
R:95-180
3f
Rieske-2qjkR06
R:95-180
Clan
:
TAT
(4)
Family
:
UCR_Fe-S_N
(4)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(3)
4a
UCR_Fe-S_N-2qjkR07
R:9-41
4b
UCR_Fe-S_N-2qjkR08
R:9-41
4c
UCR_Fe-S_N-2qjkR09
R:9-41
4d
UCR_Fe-S_N-2qjkR10
R:9-41
4e
UCR_Fe-S_N-2qjkR11
R:9-41
4f
UCR_Fe-S_N-2qjkR12
R:9-41
Clan
:
no clan defined [family: Cytochrom_B_C]
(27)
Family
:
Cytochrom_B_C
(27)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(3)
5a
Cytochrom_B_C-2qjkP07
P:282-416
5b
Cytochrom_B_C-2qjkP08
P:282-416
5c
Cytochrom_B_C-2qjkP09
P:282-416
5d
Cytochrom_B_C-2qjkP10
P:282-416
5e
Cytochrom_B_C-2qjkP11
P:282-416
5f
Cytochrom_B_C-2qjkP12
P:282-416
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