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2QEP
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (46 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE D1 DOMAIN OF PTPRN2 (IA2BETA)
Authors
:
E. Ugochukwu, A. Barr, I. Alfano, G. Berridge, N. Burgess-Brown, S. Das O. Fedorov, O. King, F. Niesen, S. Watt, P. Savitsky, E. Salah, A. C. W. P G. Bunkoczi, F. Von Delft, M. Sundstrom, A. Edwards, C. H. Arrowsmith J. Weigelt, S. Knapp, Structural Genomics Consortium (Sgc)
Date
:
26 Jun 07 (Deposition) - 24 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ptprn2, Ptprp, Phogrin, Ia-2 Beta, Autoantigen, Structural Genomics, Structural Genomics Consortium, Sgc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Barr, E. Ugochukwu, W. H. Lee, O. N. King, P. Filippakopoulos, I. Alfano, P. Savitsky, N. A. Burgess-Brown, S. Muller, S. Knapp
Large-Scale Structural Analysis Of The Classical Human Protein Tyrosine Phosphatome.
Cell(Cambridge, Mass. ) V. 136 352 2009
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_PTP (A:745-1005,B:745-1005)
2: TYR_PHOSPHATASE_2 (A:924-996,B:924-996)
3: TYR_PHOSPHATASE_1 (A:943-953,B:943-953)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_PTP
PS50055
PTP type protein phosphatase family profile.
PTPR2_HUMAN
745-1005
2
A:745-1005
B:745-1005
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
PTPR2_HUMAN
924-996
2
A:924-996
B:924-996
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
PTPR2_HUMAN
943-953
2
A:943-953
B:943-953
[
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Exons
(10, 20)
Info
All Exons
Exon 1.16 (A:724-732 | B:724-732)
Exon 1.17 (A:733-782 | B:733-782)
Exon 1.18 (A:782-806 | B:782-806)
Exon 1.19 (A:807-832 | B:807-832 (gaps))
Exon 1.20 (A:833-872 | B:833-872)
Exon 1.21 (A:873-928 | B:873-928)
Exon 1.22 (A:928-946 | B:928-946)
Exon 1.23 (A:946-968 | B:946-968)
Exon 1.24 (A:968-992 (gaps) | B:968-992 (gaps...)
Exon 1.25b (A:993-1012 | B:993-1012)
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All Exon Boundaries
01: Boundary 1.14/1.16
02: Boundary 1.16/1.17
03: Boundary 1.17/1.18
04: Boundary 1.18/1.19
05: Boundary 1.19/1.20
06: Boundary 1.20/1.21
07: Boundary 1.21/1.22
08: Boundary 1.22/1.23
09: Boundary 1.23/1.24
10: Boundary 1.24/1.25b
11: Boundary 1.25b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000389418
1d
ENSE00001952569
chr7:
158380371-158380250
122
PTPR2_HUMAN
1-38
38
0
-
-
1.3
ENST00000389418
3
ENSE00001289898
chr7:
158282477-158282427
51
PTPR2_HUMAN
38-55
18
0
-
-
1.4
ENST00000389418
4
ENSE00001302919
chr7:
158109624-158109511
114
PTPR2_HUMAN
55-93
39
0
-
-
1.5
ENST00000389418
5
ENSE00001320738
chr7:
157997965-157997863
103
PTPR2_HUMAN
93-127
35
0
-
-
1.6
ENST00000389418
6
ENSE00001301678
chr7:
157985187-157985019
169
PTPR2_HUMAN
127-183
57
0
-
-
1.7
ENST00000389418
7
ENSE00001330207
chr7:
157959983-157959623
361
PTPR2_HUMAN
184-304
121
0
-
-
1.8
ENST00000389418
8
ENSE00001147335
chr7:
157931207-157930986
222
PTPR2_HUMAN
304-378
75
0
-
-
1.9
ENST00000389418
9
ENSE00001147328
chr7:
157929387-157929347
41
PTPR2_HUMAN
378-391
14
0
-
-
1.10
ENST00000389418
10
ENSE00001147319
chr7:
157926751-157926369
383
PTPR2_HUMAN
392-519
128
0
-
-
1.11
ENST00000389418
11
ENSE00001304923
chr7:
157903607-157903521
87
PTPR2_HUMAN
519-548
30
0
-
-
1.12
ENST00000389418
12
ENSE00001319507
chr7:
157874069-157873990
80
PTPR2_HUMAN
548-575
28
0
-
-
1.13
ENST00000389418
13
ENSE00001295610
chr7:
157691429-157691365
65
PTPR2_HUMAN
575-596
22
0
-
-
1.14
ENST00000389418
14
ENSE00001302375
chr7:
157475629-157475417
213
PTPR2_HUMAN
597-667
71
0
-
-
1.16
ENST00000389418
16
ENSE00001325204
chr7:
157449243-157449049
195
PTPR2_HUMAN
668-732
65
2
A:724-732
B:724-732
9
9
1.17
ENST00000389418
17
ENSE00001315560
chr7:
157414201-157414054
148
PTPR2_HUMAN
733-782
50
2
A:733-782
B:733-782
50
50
1.18
ENST00000389418
18
ENSE00001322732
chr7:
157396767-157396694
74
PTPR2_HUMAN
782-806
25
2
A:782-806
B:782-806
25
25
1.19
ENST00000389418
19
ENSE00001324758
chr7:
157388007-157387930
78
PTPR2_HUMAN
807-832
26
2
A:807-832
B:807-832 (gaps)
26
26
1.20
ENST00000389418
20
ENSE00001325921
chr7:
157370832-157370713
120
PTPR2_HUMAN
833-872
40
2
A:833-872
B:833-872
40
40
1.21
ENST00000389418
21
ENSE00001292175
chr7:
157369471-157369305
167
PTPR2_HUMAN
873-928
56
2
A:873-928
B:873-928
56
56
1.22
ENST00000389418
22
ENSE00001505822
chr7:
157364185-157364132
54
PTPR2_HUMAN
928-946
19
2
A:928-946
B:928-946
19
19
1.23
ENST00000389418
23
ENSE00001290913
chr7:
157361658-157361594
65
PTPR2_HUMAN
946-968
23
2
A:946-968
B:946-968
23
23
1.24
ENST00000389418
24
ENSE00001316950
chr7:
157341713-157341640
74
PTPR2_HUMAN
968-992
25
2
A:968-992 (gaps)
B:968-992 (gaps)
25
25
1.25b
ENST00000389418
25b
ENSE00001868942
chr7:
157333479-157331760
1720
PTPR2_HUMAN
993-1015
23
2
A:993-1012
B:993-1012
20
20
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2qepa_ (A:)
1b: SCOP_d2qepb_ (B:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d2qepa_
A:
1b
d2qepb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2qepB00 (B:724-1012)
1b: CATH_2qepA00 (A:724-1012)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
2qepB00
B:724-1012
1b
2qepA00
A:724-1012
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Y_phosphatase_2qepB01 (B:770-1004)
1b: PFAM_Y_phosphatase_2qepB02 (B:770-1004)
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)
Clan
:
Phosphatase
(121)
Family
:
Y_phosphatase
(93)
Homo sapiens (Human)
(82)
1a
Y_phosphatase-2qepB01
B:770-1004
1b
Y_phosphatase-2qepB02
B:770-1004
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