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2QB5
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (64 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE (ITPK1) IN COMPLEX WITH ADP AND MN2+
Authors
:
P. P. Chamberlain, S. A. Lesley, G. Spraggon
Date
:
15 Jun 07 (Deposition) - 03 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Inositol, Inositol Kinase, Kinase, Itpk1, Inositol 1, 3, 4-5/6-Kinase, Phosphate, Inositol Phosphate, Inositolphosphate, Polyphosphate, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. P. Chamberlain, X. Qian, A. R. Stiles, J. Cho, D. H. Jones, S. A. Lesley, E. A. Grabau, S. B. Shears, G. Spraggon
Integration Of Inositol Phosphate Signaling Pathways Via Human Itpk1.
J. Biol. Chem. V. 282 28117 2007
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MN
4
Ligand/Ion
MANGANESE (II) ION
3
SO4
12
Ligand/Ion
SULFATE ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:199 , PHE B:201 , ARG B:212 , PRO B:300 , GLY B:301 , GLU B:303 , HOH B:591 , HOH B:702 , HOH B:782
BINDING SITE FOR RESIDUE SO4 B 541
02
AC2
SOFTWARE
LYS A:199 , PHE A:201 , ARG A:212 , LYS A:237 , PRO A:300 , GLY A:301 , TYR A:302 , GLU A:303 , HOH A:803 , HOH A:814
BINDING SITE FOR RESIDUE SO4 A 542
03
AC3
SOFTWARE
GLY A:163 , THR A:164 , ASN A:165 , SER A:166 , HIS A:167 , ASN A:231 , HIS A:233
BINDING SITE FOR RESIDUE SO4 A 543
04
AC4
SOFTWARE
ARG A:263 , ARG A:267 , HOH A:699 , ARG B:263 , ARG B:267 , HOH B:655
BINDING SITE FOR RESIDUE SO4 B 544
05
AC5
SOFTWARE
GLY B:163 , ASN B:165 , SER B:166 , HIS B:167 , GLU B:168 , ASN B:231
BINDING SITE FOR RESIDUE SO4 B 545
06
AC6
SOFTWARE
LYS A:18 , LYS A:59 , HIS A:162 , HOH A:772
BINDING SITE FOR RESIDUE SO4 A 546
07
AC7
SOFTWARE
SER B:258 , ASP B:259 , GLU B:260 , HOH B:712 , HOH B:725 , HOH B:757
BINDING SITE FOR RESIDUE SO4 B 547
08
AC8
SOFTWARE
LYS B:199 , HIS B:233 , ASP B:281 , ASP B:295 , ASN B:297 , MN B:555 , MN B:556 , ADP B:558 , HOH B:591 , HOH B:629 , HOH B:782
BINDING SITE FOR RESIDUE SO4 B 548
09
AC9
SOFTWARE
LYS B:18 , LYS B:59 , HIS B:162 , HOH B:668 , HOH B:795
BINDING SITE FOR RESIDUE SO4 B 549
10
BC1
SOFTWARE
VAL B:209 , VAL B:210 , GLN B:211 , ARG B:256 , HOH B:674
BINDING SITE FOR RESIDUE SO4 B 550
11
BC2
SOFTWARE
SER A:258 , ASP A:259 , GLU A:260 , HOH A:590
BINDING SITE FOR RESIDUE SO4 A 551
12
BC3
SOFTWARE
LYS A:199 , ASP A:281 , ASP A:295 , ASN A:297 , MN A:553 , MN A:554 , ADP A:557 , HOH A:618 , HOH A:771 , HOH A:803 , HOH A:804
BINDING SITE FOR RESIDUE SO4 A 552
13
BC4
SOFTWARE
ASP A:295 , ASN A:297 , SO4 A:552 , ADP A:557 , HOH A:807
BINDING SITE FOR RESIDUE MN A 553
14
BC5
SOFTWARE
ASP A:281 , ASP A:295 , SO4 A:552 , ADP A:557 , HOH A:618
BINDING SITE FOR RESIDUE MN A 554
15
BC6
SOFTWARE
ASP B:281 , ASP B:295 , SO4 B:548 , ADP B:558 , HOH B:629
BINDING SITE FOR RESIDUE MN B 555
16
BC7
SOFTWARE
ASP B:295 , ASN B:297 , SO4 B:548 , ADP B:558 , HOH B:772
BINDING SITE FOR RESIDUE MN B 556
17
BC8
SOFTWARE
ARG A:106 , ILE A:155 , LYS A:157 , HIS A:167 , MET A:169 , GLN A:188 , ASN A:189 , PHE A:190 , ILE A:191 , HIS A:193 , LEU A:197 , SER A:214 , LEU A:215 , SER A:232 , SER A:236 , ASP A:281 , ILE A:294 , ASP A:295 , SO4 A:552 , MN A:553 , MN A:554 , HOH A:584 , HOH A:618 , HOH A:771
BINDING SITE FOR RESIDUE ADP A 557
18
BC9
SOFTWARE
ARG B:106 , ILE B:155 , LYS B:157 , HIS B:167 , MET B:169 , GLN B:188 , ASN B:189 , PHE B:190 , ILE B:191 , HIS B:193 , LEU B:197 , SER B:214 , LEU B:215 , SER B:232 , SER B:236 , ASP B:281 , ILE B:294 , ASP B:295 , SO4 B:548 , MN B:555 , MN B:556 , HOH B:566 , HOH B:629 , HOH B:772
BINDING SITE FOR RESIDUE ADP B 558
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(10, 20)
Info
All Exons
Exon 1.2a (A:1-32 | B:1-32)
Exon 1.3 (A:32-40 | B:32-40)
Exon 1.4 (A:41-82 | B:41-82)
Exon 1.5 (A:83-122 | B:83-122)
Exon 1.6 (A:122-155 | B:122-155 (gaps))
Exon 1.7 (A:155-168 | B:155-168)
Exon 1.8 (A:169-224 (gaps) | B:169-224)
Exon 1.9 (A:224-246 | B:224-246 (gaps))
Exon 1.10 (A:247-301 | B:247-301)
Exon 1.11b (A:301-335 | B:301-335)
View:
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All Exon Boundaries
01: Boundary 1.1/1.2a
02: Boundary 1.2a/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11b
11: Boundary 1.11b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000267615
1
ENSE00001376485
chr14:
93582263-93582117
147
ITPK1_HUMAN
-
0
0
-
-
1.2a
ENST00000267615
2a
ENSE00002191177
chr14:
93581650-93581414
237
ITPK1_HUMAN
1-32
32
2
A:1-32
B:1-32
32
32
1.3
ENST00000267615
3
ENSE00001755227
chr14:
93542964-93542940
25
ITPK1_HUMAN
32-40
9
2
A:32-40
B:32-40
9
9
1.4
ENST00000267615
4
ENSE00000808708
chr14:
93483146-93483021
126
ITPK1_HUMAN
41-82
42
2
A:41-82
B:41-82
42
42
1.5
ENST00000267615
5
ENSE00000659912
chr14:
93460342-93460225
118
ITPK1_HUMAN
83-122
40
2
A:83-122
B:83-122
40
40
1.6
ENST00000267615
6
ENSE00000808707
chr14:
93429194-93429096
99
ITPK1_HUMAN
122-155
34
2
A:122-155
B:122-155 (gaps)
34
34
1.7
ENST00000267615
7
ENSE00000659910
chr14:
93428740-93428700
41
ITPK1_HUMAN
155-168
14
2
A:155-168
B:155-168
14
14
1.8
ENST00000267615
8
ENSE00000659909
chr14:
93424711-93424546
166
ITPK1_HUMAN
169-224
56
2
A:169-224 (gaps)
B:169-224
56
56
1.9
ENST00000267615
9
ENSE00000659908
chr14:
93418358-93418291
68
ITPK1_HUMAN
224-246
23
2
A:224-246
B:224-246 (gaps)
23
23
1.10
ENST00000267615
10
ENSE00000659907
chr14:
93412838-93412676
163
ITPK1_HUMAN
247-301
55
2
A:247-301
B:247-301
55
55
1.11b
ENST00000267615
11b
ENSE00001627119
chr14:
93408249-93406069
2181
ITPK1_HUMAN
301-414
114
2
A:301-335
B:301-335
35
35
[
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ins134_P3_kin_2qb5B01 (B:1-318)
1b: PFAM_Ins134_P3_kin_2qb5B02 (B:1-318)
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)
Clan
:
ATP-grasp
(83)
Family
:
Ins134_P3_kin
(5)
Homo sapiens (Human)
(2)
1a
Ins134_P3_kin-2qb5B01
B:1-318
1b
Ins134_P3_kin-2qb5B02
B:1-318
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