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2QAG
Asym. Unit
Info
Asym.Unit (107 KB)
Biol.Unit 1 (184 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SEPTIN TRIMER 2/6/7
Authors
:
M. Sirajuddin
Date
:
15 Jun 07 (Deposition) - 07 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Cell Cycle, Cell Division, Gtp-Binding, Nucleotide-Binding, Phosphorylation, Acetylation, Alternative Splicing, Coiled Coil, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sirajuddin, M. Farkasovsky, F. Hauer, D. Kuhlmann, I. G. Macara, M. Weyand, H. Stark, A. Wittinghofer
Structural Insight Into Filament Formation By Mammalian Septins.
Nature V. 449 311 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:46 , GLY A:47 , LEU A:48 , GLY A:49 , LYS A:50 , SER A:51 , THR A:52 , LYS A:183 , ASP A:185 , VAL A:240 , TYR A:258 , ALA B:188 , GLU B:193
BINDING SITE FOR RESIDUE GDP A 362
2
AC2
SOFTWARE
THR A:186 , GLU A:191 , ARG A:194 , THR B:51 , GLY B:52 , GLY B:54 , LYS B:55 , SER B:56 , THR B:57 , LYS B:185 , ALA B:186 , ASP B:187
BINDING SITE FOR RESIDUE GTP B 428
3
AC3
SOFTWARE
SER C:40 , GLY C:41 , LEU C:42 , GLY C:43 , LYS C:44 , SER C:45 , THR C:46 , GLU C:60 , LYS C:176 , ASP C:178 , THR C:179 , GLY C:231 , TYR C:248
BINDING SITE FOR RESIDUE GDP C 419
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: G_SEPTIN (A:34-304,B:40-305,C:29-296)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_SEPTIN
PS51719
Septin-type guanine nucleotide-binding (G) domain profile.
SEPT2_HUMAN
34-306
1
A:34-304
SEPT6_HUMAN
39-305
1
B:40-305
SEPT7_HUMAN
47-316
1
C:29-296
[
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Exons
(23, 23)
Info
All Exons
Exon 1.4 (B:17-49 (gaps))
Exon 1.5 (B:49-114 (gaps))
Exon 1.6 (B:114-176 (gaps))
Exon 1.7 (B:177-230 (gaps))
Exon 1.8 (B:231-262 (gaps))
Exon 1.9b (B:268-307)
Exon 2.5c (C:15-37 (gaps))
Exon 2.6 (C:37-72 (gaps))
Exon 2.7 (C:73-96 (gaps))
Exon 2.8a (C:108-151 (gaps))
Exon 2.10 (C:151-190)
Exon 2.11 (C:191-207)
Exon 2.12 (C:225-254 (gaps))
Exon 2.13 (C:254-271 (gaps))
Exon 2.14b (C:271-296)
Exon 3.9c (A:21-44)
Exon 3.10d (A:44-62)
Exon 3.11h (A:78-101 (gaps))
Exon 3.13h (A:116-159 (gaps))
Exon 3.13q (A:159-198 (gaps))
Exon 3.14d (A:199-232 (gaps))
Exon 3.15c (A:233-281 (gaps))
Exon 3.16a (A:281-304)
View:
Select:
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All Exon Boundaries
01: Boundary 1.2a/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9b
07: Boundary 1.9b/1.11b
08: Boundary 2.1c/2.5c
09: Boundary 2.5c/2.6
10: Boundary 2.6/2.7
11: Boundary 2.7/2.8a
12: Boundary 2.8a/2.10
13: Boundary 2.10/2.11
14: Boundary 2.11/2.12
15: Boundary 2.12/2.13
16: Boundary 2.13/2.14b
17: Boundary 2.14b/2.16b
18: Boundary 3.7d/3.9c
19: Boundary 3.9c/3.10d
20: Boundary 3.10d/3.11h
21: Boundary 3.11h/3.13h
22: Boundary 3.13h/3.13q
23: Boundary 3.13q/3.14d
24: Boundary 3.14d/3.15c
25: Boundary 3.15c/3.16a
26: Boundary 3.16a/3.17a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000343984
2a
ENSE00002201235
X:118827333-118827039
295
SEPT6_HUMAN
1-10
10
0
-
-
1.4
ENST00000343984
4
ENSE00001037865
X:118809631-118809517
115
SEPT6_HUMAN
11-49
39
1
B:17-49 (gaps)
33
1.5
ENST00000343984
5
ENSE00000854488
X:118797640-118797445
196
SEPT6_HUMAN
49-114
66
1
B:49-114 (gaps)
66
1.6
ENST00000343984
6
ENSE00001710959
X:118787003-118786817
187
SEPT6_HUMAN
114-176
63
1
B:114-176 (gaps)
63
1.7
ENST00000343984
7
ENSE00000854485
X:118784061-118783900
162
SEPT6_HUMAN
177-230
54
1
B:177-230 (gaps)
54
1.8
ENST00000343984
8
ENSE00000854482
X:118774751-118774655
97
SEPT6_HUMAN
231-263
33
1
B:231-262 (gaps)
32
1.9b
ENST00000343984
9b
ENSE00000854480
X:118771158-118770990
169
SEPT6_HUMAN
263-319
57
1
B:268-307
40
1.11b
ENST00000343984
11b
ENSE00001649048
X:118767455-118767323
133
SEPT6_HUMAN
319-363
45
0
-
-
1.12a
ENST00000343984
12a
ENSE00000854477
X:118763471-118763281
191
SEPT6_HUMAN
364-427
64
0
-
-
1.14e
ENST00000343984
14e
ENSE00001391340
X:118752749-118751602
1148
SEPT6_HUMAN
427-434
8
0
-
-
2.1c
ENST00000350320
1c
ENSE00001745473
chr7:
35840627-35840882
256
SEPT7_HUMAN
1-21
21
0
-
-
2.5c
ENST00000350320
5c
ENSE00001656934
chr7:
35872408-35872510
103
SEPT7_HUMAN
22-56
35
1
C:15-37 (gaps)
23
2.6
ENST00000350320
6
ENSE00001751801
chr7:
35903162-35903268
107
SEPT7_HUMAN
56-91
36
1
C:37-72 (gaps)
36
2.7
ENST00000350320
7
ENSE00001618039
chr7:
35912276-35912376
101
SEPT7_HUMAN
92-125
34
1
C:73-96 (gaps)
24
2.8a
ENST00000350320
8a
ENSE00001661190
chr7:
35913251-35913385
135
SEPT7_HUMAN
125-170
46
1
C:108-151 (gaps)
44
2.10
ENST00000350320
10
ENSE00001622608
chr7:
35919433-35919550
118
SEPT7_HUMAN
170-209
40
1
C:151-190
40
2.11
ENST00000350320
11
ENSE00001263591
chr7:
35922094-35922186
93
SEPT7_HUMAN
210-240
31
1
C:191-207
17
2.12
ENST00000350320
12
ENSE00001606979
chr7:
35923501-35923597
97
SEPT7_HUMAN
241-273
33
1
C:225-254 (gaps)
30
2.13
ENST00000350320
13
ENSE00001677112
chr7:
35925438-35925489
52
SEPT7_HUMAN
273-290
18
1
C:254-271 (gaps)
18
2.14b
ENST00000350320
14b
ENSE00000832354
chr7:
35930278-35930403
126
SEPT7_HUMAN
290-332
43
1
C:271-296
26
2.16b
ENST00000350320
16b
ENSE00001662836
chr7:
35937858-35937993
136
SEPT7_HUMAN
332-377
46
0
-
-
2.16f
ENST00000350320
16f
ENSE00000832356
chr7:
35942686-35942825
140
SEPT7_HUMAN
378-424
47
0
-
-
2.17a
ENST00000350320
17a
ENSE00001712469
chr7:
35943864-35944915
1052
SEPT7_HUMAN
424-436
13
0
-
-
3.1a
ENST00000391973
1a
ENSE00001916200
chr2:
242254515-242255025
511
SEPT2_HUMAN
-
0
0
-
-
3.7d
ENST00000391973
7d
ENSE00002165908
chr2:
242263631-242263656
26
SEPT2_HUMAN
1-3
3
0
-
-
3.9c
ENST00000391973
9c
ENSE00001592925
chr2:
242265408-242265528
121
SEPT2_HUMAN
4-44
41
1
A:21-44
24
3.10d
ENST00000391973
10d
ENSE00002190005
chr2:
242274541-242274627
87
SEPT2_HUMAN
44-73
30
1
A:44-62
19
3.11h
ENST00000391973
11h
ENSE00001140497
chr2:
242275390-242275513
124
SEPT2_HUMAN
73-114
42
1
A:78-101 (gaps)
24
3.13h
ENST00000391973
13h
ENSE00001140494
chr2:
242276797-242276931
135
SEPT2_HUMAN
114-159
46
1
A:116-159 (gaps)
44
3.13q
ENST00000391973
13q
ENSE00001140486
chr2:
242277088-242277205
118
SEPT2_HUMAN
159-198
40
1
A:159-198 (gaps)
40
3.14d
ENST00000391973
14d
ENSE00001140480
chr2:
242282407-242282508
102
SEPT2_HUMAN
199-232
34
1
A:199-232 (gaps)
34
3.15c
ENST00000391973
15c
ENSE00001140474
chr2:
242283167-242283312
146
SEPT2_HUMAN
233-281
49
1
A:233-281 (gaps)
49
3.16a
ENST00000391973
16a
ENSE00001140465
chr2:
242285581-242285664
84
SEPT2_HUMAN
281-309
29
1
A:281-304
24
3.17a
ENST00000391973
17a
ENSE00001140455
chr2:
242287549-242287606
58
SEPT2_HUMAN
309-328
20
0
-
-
3.18a
ENST00000391973
18a
ENSE00001147389
chr2:
242289488-242289618
131
SEPT2_HUMAN
329-361
33
0
-
-
3.19d
ENST00000391973
19d
ENSE00001557502
chr2:
242291382-242293439
2058
SEPT2_HUMAN
-
0
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Septin_2qagA01 (A:34-304)
1b: PFAM_Septin_2qagB01 (B:40-307)
1c: PFAM_Septin_2qagC01 (C:29-296)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Septin
(3)
Homo sapiens (Human)
(3)
1a
Septin-2qagA01
A:34-304
1b
Septin-2qagB01
B:40-307
1c
Septin-2qagC01
C:29-296
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