PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2Q9Q
Biol. Unit 2
Info
Asym.Unit (247 KB)
Biol.Unit 1 (123 KB)
Biol.Unit 2 (123 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE CRYSTAL STRUCTURE OF FULL LENGTH HUMAN GINS COMPLEX
Authors
:
Y. P. Chang, G. Wang, X. S. Chen
Date
:
13 Jun 07 (Deposition) - 07 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.36
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Elongated Spindle, Helix Bundle, Replication
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. P. Chang, G. Wang, V. Bermudez, J. Hurwitz, X. S. Chen
Crystal Structure Of The Gins Complex And Functional Insights Into Its Role In Dna Replication.
Proc. Natl. Acad. Sci. Usa V. 104 12685 2007
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051606 (I97I, chain G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051606
V
97
I
PSF1_HUMAN
Polymorphism
6076347
G
I
97
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(7, 14)
Info
All SCOP Domains
1a: SCOP_d2q9qc_ (C:)
1b: SCOP_d2q9qg_ (G:)
2a: SCOP_d2q9qa1 (A:62-175)
2b: SCOP_d2q9qe1 (E:62-175)
3a: SCOP_d2q9qd1 (D:88-193)
3b: SCOP_d2q9qh1 (H:88-193)
4a: SCOP_d2q9qb1 (B:21-165)
4b: SCOP_d2q9qf1 (F:21-165)
5a: SCOP_d2q9qa2 (A:1-61)
5b: SCOP_d2q9qe2 (E:1-61)
6a: SCOP_d2q9qd2 (D:2-87)
6b: SCOP_d2q9qh2 (H:2-87)
7a: SCOP_d2q9qb2 (B:166-222)
7b: SCOP_d2q9qf2 (F:166-222)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GINS helical bundle-like
(13)
Superfamily
:
GINS helical bundle-like
(13)
Family
:
PSF1 N-terminal domain-like
(3)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2q9qc_
C:
1b
d2q9qg_
G:
Family
:
PSF2 C-terminal domain-like
(3)
Protein domain
:
DNA replication complex GINS protein PSF2
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d2q9qa1
A:62-175
2b
d2q9qe1
E:62-175
Family
:
PSF3 C-terminal domain-like
(3)
Protein domain
:
GINS complex subunit 3, PSF3
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
3a
d2q9qd1
D:88-193
3b
d2q9qh1
H:88-193
Family
:
SLD5 N-terminal domain-like
(4)
Protein domain
:
GINS complex subunit 4, SLD5
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
4a
d2q9qb1
B:21-165
4b
d2q9qf1
F:21-165
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GINS/PriA/YqbF domain
(11)
Superfamily
:
PriA/YqbF domain
(11)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
5a
d2q9qa2
A:1-61
5b
d2q9qe2
E:1-61
Family
:
PSF3 N-terminal domain-like
(3)
Protein domain
:
GINS complex subunit 3, PSF3
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
6a
d2q9qd2
D:2-87
6b
d2q9qh2
H:2-87
Family
:
SLD5 C-terminal domain-like
(2)
Protein domain
:
GINS complex subunit 4, SLD5
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
7a
d2q9qb2
B:166-222
7b
d2q9qf2
F:166-222
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Sld5_2q9qE01 (E:42-153)
1b: PFAM_Sld5_2q9qE02 (E:42-153)
1c: PFAM_Sld5_2q9qH01 (H:66-173)
1d: PFAM_Sld5_2q9qH02 (H:66-173)
1e: PFAM_Sld5_2q9qF01 (F:22-127)
1f: PFAM_Sld5_2q9qF02 (F:22-127)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Sld5]
(1)
Family
:
Sld5
(1)
Homo sapiens (Human)
(1)
1a
Sld5-2q9qE01
E:42-153
1b
Sld5-2q9qE02
E:42-153
1c
Sld5-2q9qH01
H:66-173
1d
Sld5-2q9qH02
H:66-173
1e
Sld5-2q9qF01
F:22-127
1f
Sld5-2q9qF02
F:22-127
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (247 KB)
Header - Asym.Unit
Biol.Unit 1 (123 KB)
Header - Biol.Unit 1
Biol.Unit 2 (123 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2Q9Q
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help